Abstract

Biomedical literature is a large and rich source of information for various applications. Text mining tools aim at extracting information from the literature in an efficient manner since processing scientific texts is a complex task given the formal and highly specialized language. Text mining tools tackle these challenges using different approaches, such as rule-based methods and machine learning algorithms including deep learning. This document overviews the current biomedical text mining tools by describing their approaches, tasks (e.g., Named Entity Recognition, Relation Extraction, Event Extraction, Question Answering), available corpora, toolkits and applications, and community challenges.

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