Abstract

The survey of fish diversity is an important part of the protection of the ecological health of rivers and lakes. Environmental DNA technology is a new tool to improve the accuracy of traditional morphological surveys of biodiversity and to monitor the amount of diversity. At present, there are few studies on monitoring fish diversity in lake inlets using eDNA technology. In this study, we used various types of estuaries in the Dianchi basin as the research object, used environmental DNA technology to monitor the fish diversity in typical estuaries, and analyzed the temporal and spatial changes and the relationship between environmental factors and fish diversity. In the Dianchi basin, we identified a total of 63 fish species belonging to 8 different orders, 21 families, and 51 genera across two seasons. The Carpidae family had the highest number of species, with Carassius auratus being the most prevalent species. The Shannon index analysis yielded a p-value of 0.0018 (<0.05), suggesting significant seasonal variations in the fish community structure within the typical estuaries of the Dianchi basin. Furthermore, the β-diversity accounted for 59.6% and 57% of the variations in fish communities among the various estuary types in March and July, respectively. Fish species varied considerably between estuaries, with Carassius auratus, Cyprinus carpio, Rhodeus sinensis, Acheilognathus chankaensis, and Coilia nasus all occurring at various points. The agricultural estuary differed substantially from the urban, suburban, and lake areas. Redundancy analysis revealed that the fish community structure during the dry period was primarily influenced by total phosphorus, pH, total nitrogen (TN), and chlorophyll. Conversely, during the rich period, the fish community structure was mainly influenced by dissolved oxygen and TN. This study demonstrated the utilization of environmental DNA technology in assessing the ecological health of rivers and lakes, specifically highlighting its effectiveness in exposing the ecological condition of a representative Dianchi estuary.

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