Abstract
Here we develop a novel method for quantifying sediment components, e.g. biogenic silica, organic or mineral matter, from near infrared (NIR) spectra based on fitting by multiple regression of measured spectra for end-member materials. We show that with suitable end-members our new open-source multiple regression routine gives excellent simultaneous quantification of the major components of a sediment, the concentrations comparing well with independent methods of quantification. Widely used partial least squares regression approaches rely on large environmental training data sets; our method produces comparable results, but with the advantages of negating the need for a training dataset and with greater simplicity and theoretical robustness. We demonstrate that component NIR spectra are additive, a prerequisite for use of multiple regression to un-mix the compound spectra, and show that a number of environmental materials make suitable end-members for this analysis. We show that spectral mixing is not conservative with respect to mass proportion, but rather to the relative chromatic intensity of contributing sediment components. Concentrations can be calculated using the measured spectra by correction using a chromatic intensity factor, the value of which can be measured independently. We have applied our approach to a postglacial sediment sequence from Loch Grannoch (SW Scotland) and reveal a down-core pattern of varying dominance by biogenic silica, organic and mineral content from the late glacial to present. With isolation and measurement of appropriate end-members this multivariate regression approach to interrogating NIR spectra has utility across a wide range of sedimentary environments and potentially for other spectral analytical methods.
Highlights
Near infrared diffuse reflectance spectroscopy (NIRS) has proven to be a valuable tool for quantifying the components present in lake sediments, such as type and quantity of organic and mineral matters (Malley et al 1999; Malley and Williams 2014; Pearson et al 2014)
A substantial data training set is required for a component to be quantified from the IR or near infrared (NIR) spectra, which must be based either on large numbers of samples with independent measurement of that given component or on artificial mixtures requiring large quantities of purified end-member materials
Similar to previous work (Burns and Ciurczak 2001; Korsman et al 2001; Pearson et al 2014) we found using the 1st derivative of the NIR spectra was most appropriate. 1st derivatives for all NIR spectra were calculated using a centrally-weighted Savitzky– Golay smoothing (SGA) algorithm, and our analysis focuses on the wavelengths 8000–3800 cm-1, minimising noise whilst containing the key spectral structure diagnostic of organic and mineral components
Summary
Near infrared diffuse reflectance spectroscopy (NIRS) has proven to be a valuable tool for quantifying the components present in lake sediments, such as type and quantity of organic and mineral matters (Malley et al 1999; Malley and Williams 2014; Pearson et al 2014). A substantial data training set is required for a component to be quantified from the IR or NIR spectra, which must be based either on large numbers of samples with independent measurement of that given component (for example, % total organic carbon studied by Pearson et al 2014) or on artificial mixtures requiring large quantities of purified end-member materials (for example, biogenic silica studied by Meyer-Jacob et al 2014, in this case by FTIRS). Because PLS methods cannot be applied simultaneously to a number of components, it is difficult to evaluate potential interference in the NIR spectra between components, which instead may remain hidden in the PLS numerical processing
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