Long-term cover crop monocultures and mixtures improve soil multifunctionality and shift microbial communities and functions

Abstract

Long-term cover crops are an emerging approach for achieving sustainable agriculture by reducing fertilizer use and enhancing soil quality. However, soil microbial communities, multifunctionality (i.e., the ability of soil ecosystems to simultaneously provide and maintain multiple ecological functions), and their relationships in cover crops remain poorly understood, especially in cover crop mixtures. To address these issues, here, we conducted a 15-year field experiment under different cover crop deployments (one legume and one brassica grown in monoculture or in mixture) in Carya cathayensis plantations. We found that cover crops significantly increased soil microbial diversity and multifunctionality, especially in mixtures. The bacterial and fungal compositions was significantly affected by cover crops. Interestingly, some taxa may serve as potential indicator species for nutrient status (i.e., bacterial Subgroup_2, Subgroup_6 and Subgroup_17). Cover crops significantly increased beneficial microbial functions (e.g., nitrogen fixation) but decreased pathogen-related functions (e.g., pathotroph). Bacterial and fungal community assemblages under cover crops were dominated by stochastic processes. Cover crops, especially mixtures, had a higher habitat niche breadth (Bcom). In addition, cover crops have more complex and stable bacterial and fungal networks. Partial least squares path modeling further confirmed that the variations in soil multifunctionality were largely related to nutrient resources. Importantly, the relative abundance of rare microbial taxa was also highly correlated with soil multifunctionality. Overall, our study illustrates that the use of cover crops in the long term can foster soil microbial specific taxa and contribute to improved soil multifunctionality. Our study provides support for the benefits of a legume-brassica mixture over monocultures of either and a theoretical basis for exploring cover crops as an ecological management model.