Abstract
BackgroundThe BAHD acyltransferase superfamily exhibits various biological roles in plants, including regulating fruit quality, catalytic synthesizing of terpene, phenolics and esters, and improving stress resistance. However, the copy numbers, expression characteristics and associations with fruit aroma formation of the BAHD genes remain unclear.ResultsIn total, 717 BAHD genes were obtained from the genomes of seven Rosaceae, (Pyrus bretschneideri, Malus domestica, Prunus avium, Prunus persica, Fragaria vesca, Pyrus communis and Rubus occidentalis). Based on the detailed phylogenetic analysis and classifications in model plants, we divided the BAHD family genes into seven groups, I-a, I-b, II-a, II-b, III-a, IV and V. An inter-species synteny analysis revealed the ancient origin of BAHD superfamily with 78 syntenic gene pairs were detected among the seven Rosaceae species. Different types of gene duplication events jointly drive the expansion of BAHD superfamily, and purifying selection dominates the evolution of BAHD genes supported by the small Ka/Ks ratios. Based on the correlation analysis between the ester content and expression levels of BAHD genes at different developmental stages, four candidate genes were selected for verification as assessed by qRT-PCR. The result implied that Pbr020016.1, Pbr019034.1, Pbr014028.1 and Pbr029551.1 are important candidate genes involved in aroma formation during pear fruit development.ConclusionWe have thoroughly identified the BAHD superfamily genes and performed a comprehensive comparative analysis of their phylogenetic relationships, expansion patterns, and expression characteristics in seven Rosaceae species, and we also obtained four candidate genes involved in aroma synthesis in pear fruit. These results provide a theoretical basis for future studies of the specific biological functions of BAHD superfamily members and the improvement of pear fruit quality.
Highlights
The BAHD acyltransferase superfamily exhibits various biological roles in plants, including regulating fruit quality, catalytic synthesizing of terpene, phenolics and esters, and improving stress resistance
Because they lacked the two domains, three, six, six, six, seven, eight and 20 genes were removed from Prunus persica, P. bretschneideri (Chinese white pear), Pyrus communis (European pear), Rubus occidentalis, Fragaria vesca, Malus domestica and Prunus avium, respectively
Expression pattern of BAHD genes in Chinese white pear Based on transcriptome data (Additional file 1: Table S6) from different pear tissues, we determined that most genes in Chinese white pear showed higher expression in roots (Fig. 7), and we discovered that 37 of the BAHD genes were expressed in all four stages of fruit development
Summary
The BAHD acyltransferase superfamily exhibits various biological roles in plants, including regulating fruit quality, catalytic synthesizing of terpene, phenolics and esters, and improving stress resistance. The copy numbers, expression characteristics and associations with fruit aroma formation of the BAHD genes remain unclear. Pear is an important temperate Rosaceae fruit tree worldwide. In 2012, the genome sequence of pear ‘Dangshansuli’) was released, providing a resource for research on genomics and molecular biology in pear. Genome sequences of six other Rosaceae fruit species are available, allowing comparative genomics studies among economically important Rosaceae species. Fruit quality including sugar content, fruit size, fruit aroma, is tightly coupled with consumer choice and commercial value. Fruit aroma is an inherent quality/characteristic, which distinguishes the different fruit species even different cultivars within a species.
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