Forest Soil Microbiomes: A Review of Key Research from 2003 to 2023

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Forests have a key role in mitigating both non-biological and biological ecological disturbances. However, major disturbances (soil pollution, shift from native forest species to exoticones, forested watersheds and climate changes) can have different impacts on a forest’s soil microbiome. Because the soil microbial community of forests has a key role in a variety of ecosystem services that promote the forest’s health, this review tries to answer the following questions: (i) Which are the main ecological disturbances that drive the responses of the forest soil microbiome? (ii) How can we measure these changes? For this aim, the review summarizes details on the tree vegetation type, the microbial communities in forest ecosystems, and the mutual influence between plants, soil, and microbiomes. Microbial communities are shaped by factors such as soil type and composition, plant and vegetation types, nutrient levels and soil fertility, disturbance patterns, symbiotic associations, biotic interactions, and the progression of forest succession. Anthropogenic activities produce a rapid response in the microbial communities, leading to both short- and long-term alterations. Harvesting processes reduce drastically the microbiome diversity, forcing a shift from specialized to more generalist microorganisms. Restoration scenarios indicate a re-establishment of microbial communities to a level similar to the native forest, but with a high percentage of replaced native microorganisms. This review emphasizes that the forest soil microbiome is shaped by a range of environmental, ecological, and biotic factors. The primary drivers of the soil microbiome in forest ecosystems discussed in this review include soil composition and nutrient availability, plant community structure, microbial interactions within the soil, disturbances, succession, and temporal dynamics. When considered together, these factors interact in complex ways, influencing the diversity, function, and resilience of the soil microbiome in forest ecosystems.