Zinc (Zn) in aerosols plays important roles for biological activity and attracts public attention from the perspective of environmental measures. Because of its high volatility and water solubility, Zn is readily released into the atmosphere by human activities and supplied to natural water. To explore the origin and formation process of Zn in atmospheric aerosols, it is important to investigate isotopic (= δ66Zn) and speciation information of Zn in size-fractioned aerosols. We measured light δ66Zn (e.g., δ66ZnIRMM = −1.32‰ as the lowest value; IRMM-3702 is used for the normalization in this study) mainly for the particles ranging from 0.65 to 4.7 μm for the samples collected at Tsukuba, Chiba, and a motorway tunnel (Yasumiyama Tunnel in Hiroshima) in particular for the samples collected in 2002, but δ66ZnIRMM in the particle sizes increased above −0.8‰ for the samples collected in 2011 and 2016. Zn species in aerosols were estimated based on X-ray absorption near-edge structure (XANES) and extended X-ray absorption fine structure (EXAFS) spectroscopy, suggesting that (i) Zn oxalate and sulfate and (ii) Zn oxide, sulfide, and carbonate are main Zn species in fine and coarse particles, respectively. In particular, Zn chloride was found mainly in the middle particle size range (2.1–4.7 μm), which corresponds to the range with light δ66Zn, suggesting that the light δ66Zn was caused by emission of Zn chloride during artificial combustion processes in accordance with other studies. The origins of Zn in aerosols are assumed to have three endmembers; (A) tire and brake wears and road dust, (B) industrial emissions, and (C) vehicular exhaust. Their formation mechanisms are related to vaporization and mixing processes based on the results of combined analysis of atmospheric concentration, speciation, and isotopic composition of Zn with different particle sizes. These trends could be successfully interpreted by species-specific δ66Zn values: component (A) consisting mainly of Zn oxide and sulfide with relatively heavier δ66Zn, component (B) Zn chloride and sulfate secondarily formed in the droplet mode having lightest δ66Zn among all the species, and (C) Zn oxalate with δ66Zn closer to 0‰ due to its emission by the complete combustion in vehicle engines. Species-specific Zn isotope data obtained by the simultaneous application of speciation and isotopic analyses of Zn in size-fractionated aerosols complementary provide novel information on the initial generation and secondary processes for the formation of Zn species in the aerosols.