Zn Distance Research Articles

Ca3Ru3Zn13 – a zinc-rich intermetallic phase composed of closest-packed layers

Abstract Ca3Ru3Zn13 was synthesized from the elements in a tantalum tube in a muffle furnace. The sample was annealed to 1123 K followed by slow cooling to enhance crystal growth. Ca3Ru3Zn13 was characterized through a Guinier powder pattern. The structure was refined from single crystal X-ray diffractometer data: new type, Pbcn, a = 522.92(5), b = 1792.72(14), c = 2789.6(2) pm, wR2 = 0.0590, 3451 F 2 values, 177 variables. One can describe the Ca3Ru3Zn13 structure by a stacking of closest packed layers of compositions Ca6Zn10, Ca6Zn12 and Ru6Zn15. The calcium atoms have high coordination numbers: Ca1@Zn13Ru3Ca2, Ca2@Zn15Ru4Ca, Ca3@Zn15Ru4Ca and Ca4@Zn15Ru4Ca. The shortest interatomic distances occur between the ruthenium and zinc atoms (255–273 pm). The Ru1@Zn8, Ru2@Zn10 and Ru3@Zn8 polyhedra condense via common edges to the [Ru3Zn13] substructure which hosts the calcium atoms. The zinc substructure consists of 15 crystallographically independent zinc sites with a broader range of Zn–Zn distances (255–307 pm).

Molecular two-point recognition of fructosyl valine and fructosyl glycyl histidine in water by fluorescent Zn(II)-terpyridine complexes bearing boronic acids.

Selective recognition of fructosyl amino acids in water by arylboronic acid-based receptors is a central field of modern supramolecular chemistry that impacts biological and medicinal chemistry. Fructosyl valine (FV) and fructosyl glycyl histidine (FGH) occur as N-terminal moieties of human glycated hemoglobin; therefore, the molecular design of biomimetic receptors is an attractive, but very challenging goal. Herein, we report three novel cationic Zn-terpyridine complexes bearing a fluorescent N-quinolinium nucleus covalently linked to three different isomers of strongly acidified phenylboronic acids (ortho-, 2Zn; meta-, 3Zn and para-, 4Zn) for the optical recognition of FV, FGH and comparative analytes (D-fructose, Gly, Val and His) in pure water at physiological pH. The complexes were designed to act as fluorescent receptors using a cooperative action of boric acid and a metal chelate. Complex 3Zn was found to display the most acidic -B(OH)2 group (pKa = 6.98) and exceptionally tight affinity for FV (K = 1.43 × 105 M-1) with a strong quenching analytical response in the micromolar concentration range. The addition of fructose and the other amino acids only induced moderate optical changes. On the basis of several spectroscopic tools (1H, 11B NMR, UV-Vis, and fluorescence titrations), ESI mass spectrometry, X-ray crystal structure, and DFT calculations, the interaction mode between 3Zn and FV is proposed in a 1 : 1 model through a cooperative two-point recognition involving a sp3 boronate-diol esterification with simultaneous coordination bonding of the carboxylate group of Val to the Zn atom. Fluorescence quenching is attributed to a static complexation photoinduced electron transfer mechanism as evidenced by lifetime experiments. The addition of FGH to 3Zn notably enhanced its emission intensity with micromolar affinity, but with a lower apparent binding constant than that observed for FV. FGH interacts with 3Zn through boronate-diol complexation and coordination of the imidazole ring of His. DFT-optimized structures of complexes 3Zn-FV and 3Zn-FGH show a picture of binding which shows that the Zn-complex has a suitable (B⋯Zn) distance to the two-point recognition with these analytes. Molecular recognition of fructosyl amino acids by transition-metal-based receptors has not been explored until now.

Precise Confinement and Position Distribution of Atomic Cu and Zn in ZSM-5 for CO2 Hydrogenation to Methanol

CuZn-based catalysts are widely used in CO2 hydrogenation, which may effectively convert CO2 to methanol and alleviate CO2 emission issues. The precise design of a model catalyst with a clear atomic structure is crucial in studying the relationship between structure and catalytic activity. In this work, a one-pot strategy was used to synthesize CuZn@ZSM-5 catalysts with approximately two Cu atoms and one Zn atom per unit cell. Atomic Cu and Zn species are confirmed to be located in the [54.6.102] and [62.104] tilings, respectively, by using magic-angle spinning nuclear magnetic resonance spectroscopy (MAS NMR), synchrotron X-ray powder diffraction (SXRD) and high-signal-to-noise-ratio annular dark field scanning transmission electron microscopy (High SNR ADF-STEM). Catalytic hydrogenation of CO2 to methanol was used as a model reaction to investigate the activity of the catalyst with confined active species. Compared to the Cu@ZSM-5, Zn@ZSM-5 and their mixture, the CuZn@ZSM-5 catalyst with a close Cu–Zn distance of 4.5 Å achieves a comparable methanol space–time yield (STY) of 92.0 mgmethanol·gcatal−1·h−1 at 533 K and 4 MPa with high stability. This method is able to confine one to three metal atoms in the zeolite channel and avoid migration and agglomeration of the atoms during the reaction, which maintains the stability of the catalyst and provides an efficient way for adjustment of the type and number of metal atoms along with the distances between them in zeolites.

Strong Be−Be and Zn−Zn Bonded Aromatic Complexes of Ethyne

AbstractQuantum chemical calculations reveal that ethyne (C2H2) can be a very good fragment to create strong Be−Be and Zn−Zn interactions. The complexes are thermodynamically stable in which Be2and Zn2fragments act as electron donors towards C2H2fragment acquiring Be2δ+and Zn2δ+states. The partial positive nature of Be2and Zn2fragments made their electronic structure to be described adequately by single reference character. Introduction of electronegative F atom as in C2F2results in shorter Be−Be and Zn−Zn distances. Bonding analyses reveal that all these complexes feature delocalized π bond resulting in aromaticity.

Proximity Effect of Fe–Zn Bimetallic Catalysts on CO2 Hydrogenation Performance

The interaction between a promoter and an active metal crucially impacts catalytic performance. Nowadays, the influence of promoter contents and species has been intensively considered. In this study, we investigate the effect of the iron (Fe)–zinc (Zn) proximity of Fe–Zn bimetallic catalysts on CO2 hydrogenation performance. To eliminate the size effect, Fe2O3 and ZnO nanoparticles with uniform size are first prepared by the thermal decomposition method. By changing the loading sequence or mixing method, a series of Fe–Zn bimetallic catalysts with different Fe–Zn distances are obtained. Combined with a series of characterization techniques and catalytic performances, Fe–Zn bimetallic proximity for compositions of Fe species is discussed. Furthermore, we observe that a smaller Fe–Zn distance inhibits the reduction and carburization of the Fe species and facilitates the oxidation of carbides. Appropriate proximity of Fe and Zn (i.e., Fe1Zn1-imp and Fe1Zn1-mix samples) results in a suitable ratio of the Fe5C2 and Fe3O4 phases, simultaneously promoting the reverse water–gas shift and Fischer–Tropsch synthesis reactions. This study provides insight into the proximity effect of bimetallic catalysts on CO2 hydrogenation performance.Graphical

Strong CO2 Chemisorption in a Metal-Organic Framework with Proximate Zn-OH Groups.

A novel Zn benzotriazolate metal-organic framework (MOF), [Zn9(OAc)6(bbtm)6] (1, bbtm2- = bis(benzotriazolyl)methanone, OAc- = acetate), has been synthesized and structurally characterized using micro-crystal electron diffraction. The framework contains 12-connected nonanuclear Zn clusters with Zn-OAc groups separated by short intercluster Zn···Zn distances of 6.06 Å. Postsynthetic OAc-/OH- ligand exchange followed by thermal activation generates 1a-OH, which adsorbs CO2 at very low pressures (1.37 mmol/g at 2.5 mbar) and requires an unusually high desorption temperature (>160 °C). Diffuse reflectance IR Fourier transform spectroscopy (DRIFTS) and density functional theory (DFT) calculations have been used to interrogate the CO2 binding mechanism in 1a-OH. The formation of unsymmetric bridging carbonate ligands within the Zn···Zn pockets accompanied by strong hydrogen bonding of the carbonate with a neighboring zinc aqua ligand explains the remarkably strong CO2 affinity of 1a-OH.

A theoretical investigation ofZnZnandBeBeone electron bond

AbstractAttachment of one electron to 1,2‐diBeX‐benzene and 1,2‐diZnX‐benzene derivatives leads to the formation of stronger BeBe and ZnZn interaction compared to the neutral one. This is reflected in the dramatic shortening of the BeBe and ZnZn distance. The formation of these 2‐center‐1‐electron bonds have also been confirmed by topological survey of electron density using quantum theory of atoms in molecules and electron localization function. The formation of these bonds is expected to render stability to these radical anions. These radical anions are stable toward electron detachment and computed bond dissociation energy values are also significant.

Ordered CaCu5-type phases REPd2Zn3 (RE = Y, La–Nd, Sm, Gd–Dy)

Abstract The ternary intermetallic phases REPd2Zn3 (RE = Y, La–Nd, Sm, Gd–Dy) were synthesized from the elements by induction melting in sealed niobium ampoules followed by annealing. The CaCu5-type samples (space group P6/mmm) were characterized through Guinier powder patterns. The structures of YPd2Zn3 (a = 523.91(4), c = 430.88(3) pm, wR2 = 0.0570, 96 F 2 values, 9 variables) and NdPd2Zn3 (a = 535.08(7), c = 427.81(6) pm, wR2 = 0.0217, 123 F 2 values, 9 variables) were refined from single-crystal X-ray diffractometer data. The zinc atoms form Kagome layers in AA stacking which leave trigonal prismatic voids for the palladium and hexagonal prismatic voids for the rare earth atoms. The Zn–Zn distances within the Kagome network of YPd2Zn3 are 262 pm and the Pd–Zn distances in the Pd@Zn6 trigonal prisms are 263 pm.

Remotely controllable supramolecular rotor mounted inside a porphyrinic cage

Remotely controllable supramolecular rotor mounted inside a porphyrinic cage

Foliar surfaces as dust and aerosol pollution monitors: An assessment by a mining site

Recent studies in the southwestern United States have shown that smelting processes and mine tailings emit heavy metal(loid)s that are distributed via wind dispersion to nearby communities. With increased attention regarding the effect of air pollution on environmental health, communities have begun to use citizen/community-based monitoring techniques to measure the concentration of metal(loid)s and evaluate their air quality. This study was conducted in a mining community to assess the efficacy of foliar surfaces as compared to an inverted disc (frisbee) to sample aerosol pollutants in ambient air. The assessment was conducted by evaluating As, Pb, Cd, Cu, Al, Ni, and Zn concentrations versus distance from a former smelter, statistical and regression analyses, and enrichment factor calculations compared to similar sites worldwide. Both the foliar and frisbee collection methods had a decrease in metal(loid)s concentration as a function of distance from the retired smelter. Statistical calculations show that the collection methods had similar mean concentrations for all of the metal(loid)s of interest; however, the tests also indicate that the frisbee collection method generally collected more dust than the foliar method. The enrichment factors from both collection methods were comparable to similar studies by other mining areas referenced, except for aluminum. Since there is evidence of enrichment, correlation between methods, and citizen/community science potential, these efforts show promise for the field. Further studies should consider alternating the types of plant used for foliar collection as well as collecting samples on a more frequent basis in order to sufficiently categorize results based on meteorological conditions.

Synthesis, crystal structure, phosphate hydrolysis activity and antibacterial activity of macrocyclic dinuclear Zn(II) complex with benzyl pendant-arms

A new macrocyclic dinuclear Zn(II) complex is synthesized by the cyclocondensation between 3,3’-(ethane-1,2-diylbis (benzylazanediyl))bis(methylene) bis (2-hydroxy-5-methyl-benzaldehyde) and 1,3-diaminopropane and the subsequent with zinc salts. The as-prepared complex is characterized by elemental analysis, FT-IR, ES-MS and single crystal X-ray diffraction. The complex consists of one independent molecular unit of [Zn2(μ-OAC)L]+ ClO4− and two water molecules with one on a symmetry element. Four of these units collectively form two pairs of dinuclear complex units of [Zn2(μ-OAc)L]+ with one unit sharing two perchlorate ions and one water molecule and the other unit sharing two perchlorate ions and one symmetry equivalent water molecule. Each zinc(II) ion exhibits a slightly distorted square pyramidal geometry. Two Zn atoms are bridged by two oxygen atoms of an acetate anion and two phenolic O atoms. The Zn–Zn distance is 2.951 Å. An ordered two-dimensional network is formed by weak intermolecular interactions in the crystal structure of the complex. The phosphate ester hydrolysis activity and the antibacterial activity of the complex are studied. The results showed that the synthesized complex has an efficient catalytic activity of phosphoester bond cleavage and the potential to inhibit the growth of E. coli. The optimum catalytic rate constant (kcat) at pH 7.8 for the hydrolysis of 4-nitrophenyl phosphate disodium salt hexahydrate (pNPP) by the synthesized complex is 2.98 × 10−4 s−1, and 105 times faster than that the spontaneous hydrolysis of the phosphate monoester.

Interception of Elusive Cationic Hf-Al and Hf-Zn Heterobimetallic Adducts with Mixed Alkyl Bridges Featuring Multiple Agostic Interactions.

Heterobimetallic complexes with inequivalent bridging alkyl chains are very often invoked as key intermediates in many catalytic processes, yet their interception and structural characterization are lacking. Such complexes have been prepared from reactions of the cationic cyclometalated hafnocene [CpPr Cp Hf][B(C6 F5 )4 ] (1) with main group metal alkyls to afford the corresponding hetero-bridged cationic products, [CpPr Cp Hf(μ-R)E(R)n ][B(C6 F5 )4 ] (E=Al or Zn; R=Me, Et, or iBu). NMR and DFT studies demonstrate that both bridging alkyls establish agostic interactions with Hf, which are appreciably stronger for ethyl rather than methyl groups. Hf-Al and Hf-Zn distances are surprisingly short and only slightly longer than computed Hf-Al or Hf-Zn single bond lengths (2.80 Å). Finally, a reaction of [CpPr Cp Hf(μ-Me)Zn(Me)][B(C6 F5 )4 ] with excess ZnMe2 yields an unprecedented heterotrimetallic species, [(CpPr )2 Hf(μ-Me)(ZnMe)(μ3 -CH2 )ZnMe][B(C6 F5 )4 ], the detailed structure of which is elucidated by a combination of NMR spectroscopic methods and molecular calculations.

Synthesis and crystal structure of the first dinuclear zinc complex containing 1,4,7-triazacyclononane and biological properties of the protonated ligand

A new binuclear complex, [Zn2L2Cl4]·2H2O {L = N-aldehyde-N-(4-(benzyloxy)benzyl)-1,4,7triazacyclononane}, was synthesized and characterized by X-ray, elemental analysis, infrared and electronic spectroscopy, and mass spectrometry. The central ion is bridged by the L and lies in a tetrahedral configuration with Zn···Zn distance of 6.283 Å. The complex crystallizes in the triclinic space group Pī. ESI-MS of the complex indicates that the protonated ligand HL+ is the active species. The interaction of HL+ with calf thymus–DNA (CT–DNA) and bovine serum albumin (BSA) was studied by means of various spectroscopic methods, which revealed that HL+ could interact with CT–DNA through groove-binding mode and could quench the intrinsic fluorescence of BSA in a static quenching process. DNA–cleavage experiments indicate that HL+ exhibits efficient DNA–cleavage activity in the presence of H2O2, hydroxyl radical (HO•) may serve as the major cleavage active species, and the pseudo-Michaelis–Menten kinetic parameters (Kcat, KM, Vmax); 2.47 h−1, 2.70 × 10−4 M and 6.68 × 10−4 Mh−1.

Synthesis and Properties of Porphyrin Nanotubes

AbstractDiscrete π‐conjugated zinc porphyrin nanotubes are investigated as molecular analogues of carbon nanotubes. These porphyrin nanotubes have a diameter of 2.4 nm (Zn–Zn distance) and lengths of up to 3.6 nm, measured to the van der Waals surfaces of the outer β‐pyrrole hydrogen atoms, or 4.5 nm measured to the para hydrogen atoms of the aryl groups. We explore three different strategies for synthesizing these nanotubes. The first two strategies use a template to achieve direct or sequential stave‐joining, respectively, and proceed via linear oligomers that pre‐define the length of the nanotube. These strategies are applied to synthesize porphyrin nanotubes containing 12‐ or 18‐porphyrin subunits, with ethynylene (C2) or butadiynylene (C4) links between the 6‐porphyrin nanorings. The third strategy involves the covalent stacking of pre‐formed 6‐porphyrin nanorings to form a 12‐porphyrin nanotube, without using a template to guide this coupling reaction. The nanotubes show strongly red‐shifted absorption spectra and low fluorescence quantum yields, indicating structural rigidity and extensive π‐conjugation.

Solvent-Mediated Synthesis of M(II)-Coordination Polymer Part 1: Crystal Structure of Poly(1,2-di(4-pyridyl)ethylene-k2N,N')-bis(1,4-benzenediacetato-k4O,O′,O′′,O′′')zinc(II)], C22H18ZnN2O4

An interaction of water-methanol solution of sodium1,4-benzenediacetate (bda) and 4,4′-bipyridylethelene (bpee) with aqueous solution of Zn(NO3)2·6H2O at room temperature yielded colourless crystals of 1 after three weeks in a sealed glass tube. The compound with composition C22H18ZnN2O4 crystallizes in monoclinic space group P21/c, with the following cell dimensions: a = 10.4566(2), b = 13.3085(2), c = 13.7189(2) Å, β = 101.491(1)°. In the structure of 1, two Zn(II) neighbours are connected by two bda ligands adopting chelating and bidentate-bridging coordination modes to form a dimeric unit (Zn2O8N4) with the Zn–Zn distance of 4.0432(6) Å. The carboxyl-bridged dimeric units are extended along the [001] direction by bpee co-ligands and further linked by bda ligand to form a three-dimensional network structure. The IR shows the characteristic bands of the carboxylates at 1611/1507 cm−1 and 1424/1373 cm−1, respectively, for asymmetric and symmetric stretching −CO2− vibrations. The separation ∆[νasym(CO2−) − νsym(CO2−)] values of 187 and 134 cm−1 are indicative of chelating and bidentate bridging coordination modes of the carboxylate to the metal centre.

Synthesis and structure of catena((μ2-4,4,10,10-tetramethyl-1,3,7,9-tetraazaspiro[5.5]undecane-2,8-dione-O,O′)dichloro-zinc)

The coordination polymer, catena-((μ2-4,4,10,10-tetramethyl-1,3,7,9-tetraazaspiro[5.5]undecane-2,8-dione-O,O′)dichloro-zinc) {[Zn(C11H20N4O2)Cl2]} n (I), is prepared for the first time from zinc chloride and bicyclic bis(urea), 4,4,10,10-tetramethyl-1,3,7,9-tetraazaspiro[5.5]undecane-2,8-dione, and investigated by X-ray diffraction (CIF file CCDC no. 877812). The crystals of I are monoclinic: space group P21, a = 6.2121(17), b = 11.276(3), c = 11.387(3) A, β = 94.99(3)°, V = 794.6(3) A3, ρ(calcd.) = 1.574 g/cm3, Z = 2. The singe-phase nature of the powder sample of I is confirmed by Rietveld refinement of the powder X-ray diffraction pattern; at 293 K, a = 6.20369(11), b = 11.23336(18), c = 11.36013(16) A, β = 95.3001(11)°, V = 788.28(2) A3. The content of the major phase I in the sample is 100 ± 1%, no impurity lines are found. The zinc coordination polyhedron in the coordination polymer chain is a tetrahedron with vertices being occupied by two chlorine atoms and carbonyl O(1) and O(2) atoms of two TTSU molecules related by the symmetry code (2 − x, 1/2 + y, 2–z). The zinc bond angles are 101.05(12)°–122.13(9)°. The Zn···Zn distance in the polymer is 9.480(2) A. The chains in the coordination polymers are additionally combined by intermolecular hydrogen bonds, N(2)–H(2)···O(2)i (i 2–x, 1/2 + y, 2 − z) (H···O 2.17 A, N−H···O 147°) and N(4)–H(4)···Cl(2)ii (ii 1–x, −1/2 + y, 2–z) (H···Cl 2.48 A, N−H···Cl 159°). The chains are joined into layers along the (0 0 1) plane by intermolecular hydrogen bonds, N(1)−H(1)···Cl(1)iii (iii 1 − x, −1/2 + y, 2–z) (H···Cl 2.78 A, N−H···Cl 148°).

Trajectory of Approach of a Zinc–Hydrogen Bond to Transition Metals

AbstractThrough a dramatic advance in the coordination chemistry of the zinc–hydride bond, we describe the trajectory for the approach of this bond to transition metals. The dynamic reaction coordinate was interrogated through analysis of a series of solid state structures and is one in which the TM‐H‐Zn angle becomes increasingly acute as the TM–Zn distance decreases. Parallels may be drawn with the oxidative addition of boron–hydrogen and silicon–hydrogen bonds to transition metal centers.

Modulation of the structures and properties of bidipyrrin zinc complexes by introducing terminal α-methoxy groups

A bidipyrrin nickel complex was synthesized in a high yield by oxidatively coupling between the ligands in the corresponding 2:1 (L:M) type of dipyrrin nickel complex, and further demetallation afforded the free bidipyrrin ligand. Interestingly, when treating the bidipyrrin nickel complex or the free bidipyrrin with FeCl3 in CH2Cl2/MeOH, the symmetric di-α-methoxy bidipyrrin could be synthesized in a high yield, with two methoxy groups attached to the terminal pyrrolic α-positions. Moreover, the coordination of the unsubstituted and disubstituted bidipyrrins with Zn(OAc)2·2H2O afforded two similar M2L2 type of bidipyrrin helical complexes with different ligand conformations and different Zn⋯Zn distances of 5.353 and 3.357 Å, respectively. The difference in the conformations may be related to the electrostatic repulsions between the methoxy substituents. These results indicate that the dyes based on helical bidipyrrin zinc complexes with tunable structures and photophysical properties may be developed simply by modulating the terminal α-substituents.

Computational design of ZnP(P)4 stacks: Three modes of binding

A large variety of metalloporphyrin arrays, including stacks, have been synthesized and extensively explored for their numerous applications in molecular devices. Motivated by the phenomenon of formation of stacks by regular metalloporphyrins, we performed the computational check of the stack formation between the MP(P)4 species without any linkers or substituents. For this we chose the ZnP(P)4 species as the simplest MP(P)4 compound. Three modes of binding or coordination were found to be possible between the monomeric ZnP(P)4 units. The “convexity-to-convexity” dimer I generally is the most stable compound with the highest binding energy. The dimers II and III are generally bound significantly weaker than the “convexity-to-convexity” dimer I. In the dimer I, the strongly convex shape of both monomer units was demonstrated. The Zn–Zn distances in the dimer I, ca. 3.5[Formula: see text]Å, were computed to be significantly shorter than in two other dimers. This could lead to additional interactions between the metal centers with unpaired d-electrons involved in the formation of such a dimer. In the dimer I significant decrease of the charge was found on the Zn-centers, along with slight decrease of the positive charge on the P-centers coordinated to the Zn-centers of another monomer, and slight buildup of the positive charge on the P-centers not coordinated to the Zn-centers of another monomer.

A new two-dimensional extended adenine and thiophenecarboxylate mixed-ligand zinc(II) complex: synthesis, structure, thermostability and luminescent properties.

The design and preparation of crystalline polymeric materials has attracted increasing attention due to their diverse applications as functional materials in gas storage, separation, catalysis, sensing and photoluminescence. The judicious selection of organic linkers is critical for varying the coordination behaviour of the metal ions and determining the overall characteristics of the networks. A new adenine-based Zn(II) coordination polymer, [Zn(C6H2O4S)(C5H5N5)]n or [Zn(tdc)(9H-ade)] (H2tdc is thiophene-2,5-dicarboxylic acid and ade is adenine), has been prepared hydrothermally and the crystal structure exhibits in its packing two-dimensional (4,4) grid sheets parallel to the ab plane, featuring two distinct square cavities delimited by the two types of ligands and the Zn(II) ions with the dimensions 6.6 × 6.6 and 10.2 × 10.2 Å (based on the Zn...Zn distance). The title complex shows enhanced photoluminescence at 378 nm compared to the free ligands, suggesting that the coordination of H2tdc or adenine to the metal centre effectively increases the rigidity of the ligands and reduces the energy loss by radiative decay of intraligand excited states.