Ammonia and sulfide derived from the reduction of sulfate by the sulfate-reducing bacteria (SRB) are two of the most common inhibitors in anaerobic digestion. Zeolites and bentonites are characterized as porous materials able to adsorb both ammonia and sulfur compounds and seem to be promising candidates as additives in anaerobic digestion to counteract this co-inhibition. In this study, bentonite and zeolite 13X were subjected to alkali modification at different concentrations of NaOH to alter their physicochemical properties, and their effect on the alleviation of ammonia and sulfate co-inhibition in anaerobic digestion of cow manure was examined. The methane production in 13X treatments (13X without NaOH, 13X02-NaOH 0.2 M and 13X1-NaOH 1 M) was elevated by increasing the NaOH concentration in the modification step, resulting in a significance increase by 8.96%, 11.0% and 15.56% in 13X treatments compared to the treatment without additive. Bentonite treatments did not show the same behavior on the toxicity mitigation. The results appear to be influenced by the combined effect of 13X zeolites on the sulfur compounds adsorption and on the increase in pH and Na+ concentration in the batch reactors.