Zealand Populations Research Articles

Chloroplast diversity of giant buttercup (Ranunculus acris L., Ranunculaceae) in New Zealand and in its native range

ABSTRACTThe species Ranunculus acris L. (giant buttercup) is native to Europe but has a very large naturalised range in several countries. In New Zealand it is a serious weed of pasture, particularly in high rainfall areas. Biological control options are being sought as chemical control has proven insufficient and is leading to resistance. To find efficient pathogens or natural enemies the search needs to focus on areas of origin of the material present in New Zealand. The target range of biocontrol agents needs to be broad enough to include all R. acris haplotypes found in New Zealand but also host specific enough to not attack unintended targets. A previous study found that R. acris in New Zealand has very high chloroplast diversity, with mixed chloroplast haplotypes occurring in single populations. Haplotype-specific genetic data are therefore essential for the identification of the origin and for sourcing effective biocontrol agents. The aim of this study was to identify putative origins of the material found in New Zealand. We compared chloroplast diversity in New Zealand populations of R. acris to parts of the native and naturalised ranges, including areas of the putative origin of the New Zealand plants. The non-coding chloroplast regions trnK and psbJ-petA were sequenced to identify haplotypes. We found that the native range also had high chloroplast diversity, and that most New Zealand chloroplast haplotypes were common in northern Europe and the United Kingdom. Further sampling would be required to trace the remaining two New Zealand haplotypes to their origin, however the results suggest that R. acris was introduced from several regions in Europe.

Echiniscus testudo (Doyère, 1840) in New Zealand: anthropogenic dispersal or evidence for the ‘Everything is Everywhere’ hypothesis?

ABSTRACTMany species of microscopic invertebrates, such as tardigrades or rotifers, have been traditionally regarded as cosmopolitan. This conviction was based on classical taxonomic observations of very similar phenotypes across the globe and hypothetical abilities of micrometazoans for large-scale dispersal with air and water currents. However, several recent studies showed that micrometazoan species may have restricted geographic ranges, suggesting that microscopic size is not the only determinant of dispersal. Here, we describe the first Australasian record of Echiniscus testudo, a heterotardigrade originally described from the Holarctic. Morphological and genetic analyses gave congruent conclusions and confirmed that European and New Zealand populations represent a single species. Importantly, however, without broader sampling in primeval localities, it is not possible to test whether the New Zealand record of E. testudo is a result of natural dispersal or whether the species was brought to Australasia by humans.

Spatiotemporal and demographic variation in the diet of New Zealand lesser short-tailed bats (Mystacina tuberculata).

Variation in the diet of generalist insectivores can be affected by site‐specific traits including weather, habitat, and season, as well as demographic traits such as reproductive status and age. We used molecular methods to compare diets of three distinct New Zealand populations of lesser short‐tailed bats, Mystacina tuberculata. Summer diets were compared between a southern cold‐temperate (Eglinton) and a northern population (Puroera). Winter diets were compared between Pureora and a subtropical offshore island population (Hauturu). This also permitted seasonal diet comparisons within the Pureora population. Lepidoptera and Diptera accounted for >80% of MOTUs identified from fecal matter at each site/season. The proportion of orders represented within prey and the Simpson diversity index, differed between sites and seasons within the Pureora population. For the Pureora population, the value of the Simpson diversity index was higher in summer than winter and was higher in Pureora compared to Eglinton. Summer Eglinton samples revealed that juvenile diets appeared to be more diverse than other demographic groups. Lactating females had the lowest dietary diversity during summer in Pureora. In Hauturu, we found a significant negative relationship between mean ambient temperature and prey richness. Our data suggest that M. tuberculata incorporate a narrower diversity of terrestrial insects than previously reported. This provides novel insights into foraging behavior and ecological interactions within different habitats. Our study is the first from the Southern Hemisphere to use molecular techniques to examine spatiotemporal variation in the diet of a generalist insectivore that inhabits a contiguous range with several habitat types and climates.

Genetic diversity of Phytophthora pluvialis, a pathogen of conifers, in New Zealand and the west coast of the United States of America

Phytophthora pluvialis is the causal agent of red needle cast on Pinus radiata in New Zealand. It was first isolated in 2008 but had previously been recovered from tanoak (Notholithocarpus densiflorus) and Douglas‐fir (Pseudotsuga menziesii) trees in Oregon, USA in 2002. Phytophthora pluvialis was subsequently described as a new species in 2013 and classified as a clade III Phytophthora species. The aim of this study was to gain a better understanding of the genetic diversity, population structure and origin of this pathogen. A total of 360 P. pluvialis isolates were collected from the USA and New Zealand. The genome sequences of two P. pluvialis isolates were used to identify 27 single nucleotide polymorphism (SNP) markers that were then used to genotype the two populations. The genotypic data showed that the USA population of P. pluvialis had twice the genetic diversity and a greater number of multilocus genotypes (MLGs) compared to the New Zealand population, with 126 and 24 MLGs, respectively. The majority of the subpopulations within the USA and New Zealand showed linkage disequilibrium. All subpopulations had a negative fixation index, indicating that clonal reproduction is prevalent in both countries. A minimum spanning network (MSN) showed two unique clusters of isolates in the New Zealand population, suggesting two potential introductions of P. pluvialis into New Zealand from the USA. There was no significant structure within the New Zealand or USA populations. This study provides novel insight into the genetic structure of P. pluvialis in New Zealand and the USA.

Population Wise Variation of Breast and Ovarian Cancer-A Pharmacogenomic Approach

The somatic mutations in TP53 may be considered as one of the major genomic reasons behind breast and ovarian cancers. These two types of cancers have been reported as the major terminal diseases among women, with breast cancer as the second and ovarian cancer as the fifth cause of death as per the WHO reports last year. However, the proneness of the disease varies from trait to trait and even from person to person. A population-wise analysis of the risk factors associated with the variations results in the study of pharmacogenomic components such as epigenetics, metagenomics, environmental genomics and genomics. The single nucleotide polymorphism (SNP) has been identified as the effective genetic signature to include these variations. For TP53, 27 non-synonymous, pathogenic and deleterious SNPs have been identified in the world populations. Among Indian populations, the SNPs identified are rs1642785, rs1042522, rs8064946, rs12951053, rs1641549, rs1625895 and rs2078486. The frequency of TP53 is found to be high in New Zealand and Australian populations. The methylation probability of TP53 has been predicted through linear SVM using 10 classes of attributes keeping a total of 847 features. The prominent features identified during the epigenetic analysis useful for predicting the possibility of methylation of the gene are the constituents in the DNA sequence, epigenome/chromatin structure and presence of regulatory regions.

Is Didymosphenia geminata an introduced species in New Zealand? Evidence from trends in water chemistry, and chloroplast DNA.

Defining the geographic origins of free‐living aquatic microorganisms can be problematic because many such organisms have ubiquitous distributions, and proving absence from a region is practically impossible. Geographic origins become important if microorganisms have invasive characteristics. The freshwater diatom Didymosphenia geminata is a potentially ubiquitous microorganism for which the recent global expansion of nuisance proliferations has been attributed to environmental change. The changes may include declines in dissolved reactive phosphorus (DRP) to low levels (e.g., <2 mg/m3) and increases in dissolved inorganic nitrogen (DIN) to >10 mg/m3 because both these nutrient conditions are associated with nuisance proliferations of D. geminata. Proliferations of D. geminata have been observed in South Island, New Zealand, since 2004. We aimed to address the ubiquity hypothesis for D. geminata in New Zealand using historical river water nutrient data and new molecular analyses. We used 15 years of data at 77 river sites to assess whether trends in DRP or DIN prior to the spread of D. geminata were consistent with a transition from a rare, undetected, species to a nuisance species. We used new sequences of chloroplast regions to examine the genetic similarity of D. geminata populations from New Zealand and six overseas locations. We found no evidence for declines in DRP concentrations since 1989 that could explain the spread of proliferations since 2004. At some affected sites, lowest DRP occurred before 2004. Trends in DIN also did not indicate enhanced suitability for D. geminata. Lack of diversity in the chloroplast intergenic regions of New Zealand populations and populations from western North America is consistent with recent dispersal to New Zealand. Our analyses did not support the proposal that D. geminata was historically present in New Zealand rivers. These results provide further evidence countering proposals of general ubiquity in freshwater diatoms and indicate that, as assumed in 2004, D. geminata is a recent arrival in New Zealand.

The invasion biology of the invasive earwig, Forficula auricularia in Australasian ecosystems

The European earwig, Forficula auricularia, is a cosmopolitan insect endemic to Europe, West Asia and North Africa, which has invaded many temperate regions of the world including Australia and New Zealand. F. auricularia has been shown to be a complex of morphologically identical, reproductively isolated lineages that possess two distinct clades of mitochondrial DNA. Entomological collection data, historical literature and further field collections were used to develop a greater understanding of Australian F. auricularia’s invasion biology and its current distribution. Genetic analysis of F. auricularia collected from Australia and New Zealand using two mitochondrial genes (COI and a fragment overlapping parts of the COI -COII genes) was also undertaken. To identify the possible source populations of the Australasian invasion these sequences were compared to those from 16 locations within Britain and continental Europe. All Australasian populations were shown to be of the clade B lineage. Tasmanian and New Zealand populations consist of a single subclade comprised of only 4 and 1 haplotypes respectively. The Australian mainland populations also contained a second subclade consisting of up to 11 haplotypes indicating that multiple introductions possibly occurred on the Australian mainland. Comparison of mitochondrial genomes from Australasian and European populations showed the Australian mainland subclade to be most closely related to Portuguese haplotypes, and the Tasmanian and New Zealand clade closely related to those in Brittany, France. No European haplotypes perfectly matched the Australasian sequences. Therefore, the original source populations are still to be identified with harbours on the Iberian Peninsula’s western coast and those on the English Channel likely candidate areas.

The diatom Lindavia intermedia identified as the producer of nuisance pelagic mucilage in lakes

ABSTRACTPopulations of a centric diatom that produces copious extracellular polymeric substance (EPS), known as ‘lake snow’, have developed in several large microtrophic lakes in New Zealand over the past 10 years. The EPS coats fishing lines and blocks water filters. The phenomenon was first noticed in Lake Wanaka in the early 2000s and has recently been reported in Lakes Coleridge and Wakatipu, with single, isolated historical events occurring in Lakes Waikaremoana (confirmed) and Benmore (presumed). The species has been reported from a handful of other lakes in New Zealand, all except one of which are microtrophic-to-oligotrophic. Light and ultrastructural microscopic studies of New Zealand populations, DNA sequencing and comparison with published descriptions identify the causative species as Lindavia intermedia, part of the ‘bodanicoid’ complex. These species are best known from the Northern Hemisphere where they are regarded as confined to nutrient-poor habitats, frequently having disappeared from European lakes as the lakes underwent eutrophication. Lake snow is known from a small number of other lakes in the Northern Hemisphere, but no evidence has been reported linking L. intermedia to the production of lake snow in these lakes. The expected growth characteristics (slow and at depth) of L. intermedia pose difficulties for any prospective containment campaign.

Single-stranded RNA viruses infecting the invasive Argentine ant, Linepithema humile

Social insects host a diversity of viruses. We examined New Zealand populations of the globally widely distributed invasive Argentine ant (Linepithema humile) for RNA viruses. We used metatranscriptomic analysis, which identified six potential novel viruses in the Dicistroviridae family. Of these, three contigs were confirmed by Sanger sequencing as Linepithema humile virus-1 (LHUV-1), a novel strain of Kashmir bee virus (KBV) and Black queen cell virus (BQCV), while the others were chimeric or misassembled sequences. We extended the known sequence of LHUV-1 to confirm its placement in the Dicistroviridae and categorised its relationship to closest relatives, which were all viruses infecting Hymenoptera. We examined further for known viruses by mapping our metatranscriptomic sequences to all viral genomes, and confirmed KBV, BQCV, LHUV-1 and Deformed wing virus (DWV) presence using qRT-PCR. Viral replication was confirmed for DWV, KBV and LHUV-1. Viral titers in ants were higher in the presence of honey bee hives. Argentine ants appear to host a range of’ honey bee’ pathogens in addition to a virus currently described only from this invasive ant. The role of these viruses in the population dynamics of the ant remain to be determined, but offer potential targets for biocontrol approaches.

Phylogeography of the invasive Mediterranean fan worm,Sabella spallanzanii(Gmelin, 1791), in Australia and New Zealand

The Mediterranean fan worm,Sabella spallanzanii(Gmelin, 1791), is a highly invasive pest species introduced to Australia and New Zealand, with the ability to alter marine ecosystems by outcompeting native species for food and space.Sabella spallanzaniihas been established in southern Australia for decades, but was discovered in Botany Bay (NSW, eastern Australia) in 2013. In New Zealand,S. spallanzaniiwas first detected in March 2008. Using cytochrome c oxidase subunit 1 (COI) sequences, we investigate the phylogeography of the Australian and New Zealand populations ofS. spallanzanii, including the possible origins of the recent incursions in both countries. Australian and New ZealandS. spallanzaniishow minimal genetic diversity (0.2% divergence) and were dominated by two main haplotypes suggesting a commonality. Our molecular data are insufficient by themselves to identify fine-scale invasion pathways in antipodeanS. spallanzanii, but the similar, minimal haplotype diversity in combination with well-constrained field survey data suggests that the New Zealand incursion originated from southern Australia, rather than as a new incursion from the Mediterranean Sea. This highlights the importance of ongoing marine biosecurity surveillance and monitoring as well as improvements to biosecurity protocols for international and domestic vessels. The origin of the eastern Australian (Botany Bay) incursion is plausibly derived from either southern Australia or as a ‘return’ from New Zealand, and requires further, more detailed investigation.

Dialects of an invasive songbird are preserved in its invaded but not native source range

Biological invasions are not only events with substantial environmental and socioeconomic impacts but are also interesting natural experiments, allowing the study of phenomena such as the cultural evolution of bird song following introduction. We took an excellent opportunity to compare the distribution of dialects of the yellowhammer Emberiza citrinella, a small Eurasian passerine, in its native source region (Great Britain) and invaded range (New Zealand) more than hundred years after relocation. Recent field recordings (including those provided by volunteers within a citizen science project) were complemented by those from archives, each assigned to appropriate dialect by visual inspection of a sonogram, and the resulting spatial patterns of dialect distribution were interpreted using historical data on the yellowhammer invasion. The two countries differ markedly in the composition and distribution of dialects. New Zealand populations sing a greater number of different dialects, seven in total, five of which were not detected in the current British population, but have been reported by previous studies from the continental Europe. Two identified localities of capture (Brighton, Sussex, UK) and release (Dunedin, Otago, NZ) differ even more strikingly, having no dialects in common. The largely sedentary nature of yellowhammers allows for two mutually exclusive explanations for European dialects being detected in New Zealand but not in Great Britain: 1) the corresponding song types have emerged de novo in New Zealand, through convergent cultural evolution; 2) the dialects have disappeared from Great Britain, while being preserved in New Zealand. Indirect evidence from the widespread occurrence of these dialects in continental Europe and the reported stability of yellowhammer song, supports the latter explanation. We suggest that the yellowhammer dialect system is an avian equivalent of a phenomenon already noted in human languages, in which ancient words or structures are retained in expatriate communities.

Mentoring tertiary students from a secondary school incubator programme focusing on health careers

Purpose Developing the health workforce is an ongoing concern, especially in New Zealand, where Māori and Pasifika populations are under-represented. Programme Incubator (PI) was developed by a health provider to raise awareness of careers in the health sector. The purpose of this paper is to report on a study undertaken in a tertiary institution which involved tracking and mentoring students who had been engaged in PI, and mentoring them through their tertiary studies. Design/methodology/approach In total, 40 students (n=40) were recruited into the four year study, which involved a survey and participating in focus groups. Findings PI was found to be an effective initiative of encouraging secondary students to enter a career in health, but more work is needed to facilitate students’ choice of tertiary provider and academic programme. Within the tertiary sector, mentoring was found to be lacking. Originality/value Group mentoring and peer mentoring are introduced to mitigate these concerns and provide students with the mentoring support they require.

Association of single nucleotide polymorphisms with form traits in three New Zealand populations of radiata pine in the presence of genotype by environment interactions

Associations of single nucleotide polymorphisms (SNP) with the form traits, branch cluster frequency and stem straightness, were studied in three radiata pine (Pinus radiata D. Don) breeding populations. For branch cluster frequency, high genotype by environment (G×E) interactions were found between two sites of the POP1 trial series (Tarawera and Glenledi) and between two sites of the POP2 trial series (Tarawera and Woodhill). For stem straightness, high G×E interactions were found between two sites (Tarawera and Woodhill) in both the POP2 and POP3 trial series. Thirty-two and 26 SNPs were associated with branch cluster frequency and stem straightness respectively, across a number of sites and trial series in a genetic model assuming heterogeneous additive genetic variances across sites. These SNPs had significant associations with branch cluster frequency or stem straightness either in one site only, across sites within a trial series or across different trial series. Seven SNPs had significant associations with branch cluster frequency and seven SNPs with stem straightness across two of three trial series. One SNP had significant association with stem straightness across all three trial series. Strong G×E interactions resulted in fewer significant SNPs in common across the sites among which there were large effect differences. The percentage of genetic variance explained by SNPs showing significant associations ranged from 0.23 to 8.76 % for branch cluster frequency and from 0.37 to 12.75 % for stem straightness. This study showed that SNP effects for a trait change across environments if G×E interactions exist for that trait.

Phylogeographic analysis of the brown alga Cutleria multifida (Tilopteridales, Phaeophyceae) suggests a complicated introduction history

SummaryIn depth genetic comparisons of populations of Cutleria multifida (Tilopteridales, Phaeophyceae) collected from Europe, the northwestern Pacific Ocean, Australia and New Zealand using the DNA sequences of four gene regions (the mitochondrial cox2 and cox3 genes, the intergeneric spacer region adjacent to cox3, and the open reading frame) suggested that the northwestern European and Japanese populations were considerably greater in terms of their genetic divergence than Mediterranean, Australian or New Zealand populations. The haplotypes of the populations in northwestern European (distribution range including the type locality, seven haplotypes) and Japanese populations (seven haplotypes) were unique except for one shared haplotype. There were weak but positive correlations between the geographical distance and the genetic divergence among northwestern European and Japanese populations. Moreover, both female and male gametophytes occurred in eight of the nine Japanese localities, suggesting Japanese populations showed normal sexual heteromorphic life history of the species. In light of these results, it appears that Japanese populations were native to the area despite earlier hypothesis. In contrast, Australian and New Zealand populations were composed of only one haplotype that is very close to those found in northwestern Europe and Japan, suggesting a recent introduction history from Europe (or from northeastern Asia via Europe) by ship transport to Australia and New Zealand. The Mediterranean populations included two haplotypes identical to those found in northwestern Europe and Japan, and it is suggestive of transoceanic introductions of some populations between Mediterranean and Japanese coasts.

Reduced tolerance to simulated herbivory on clonal organs in alien genotypes: a multi-species experiment with native and introduced origins

Clonal growth may increase the likelihood for alien plants becoming invasive, as it is an efficient foraging and spatial exploration strategy. Here, we investigated the effect of artificial herbivory on organs of clonal growth and its potential to drive post-introduction evolutionary change. Based on the assumption that tolerance traits are costly and that clonal alien species may benefit from investing freed resources into growth, fecundity or nutrient acquisition, we tested the hypothesis of lower tolerance to herbivory on organs of clonal growth in alien plants. In a common-garden experiment we studied divergence in plants from native German and alien New Zealand populations of six species with different clonal growth forms. A nutrient treatment testing the plant’s acquisition abilities, was combined with artificial herbivory on clonal organs. We investigated origin-dependent differences in sexual reproduction, plant growth and the production of clonal organs. For aboveground and clonal organ biomass, alien plants showed lower tolerance to artificial herbivory on clonal organs than native plants. In the combined herbivory and nutrient treatment, alien plants of four species grew fewer clonal organs when compared to the nutrient treatment alone. Alien plants of the other two species produced more clonal organs, regardless of treatment. All species revealed significant differences in flower production between origins, with five of them producing more flowers on alien than on native plants. The results support the hypothesis that a release of herbivory on clonal organs has lead to subtle evolutionary changes in tolerance of alien plants and to a species-dependent increase in plant vigour, clonal growth and/or sexual reproduction that may enhance their invasive success.

Intensive Hemodialysis and Mortality Risk in Australian and New Zealand Populations

Intensive hemodialysis (HD) is characterized by increased frequency and/or session length compared to conventional HD. Previous analyses from Australia and New Zealand did not suggest benefit with intensive HD, although recent research suggests that relationships have changed. We present updated analyses. Observational cohort study using marginal structural modeling to adjust for changes in renal replacement modality and time-varying medical comorbid conditions. Adults initiating renal replacement therapy since March 31, 1996, followed up through December 31, 2012; this analysis included 40,842 patients over 2,187,689 patient-months. Time-varying renal replacement modality: conventional facility HD (≤3 times per week,≤6 hours per session), quasi-intensive facility HD (between conventional and intensive), intensive facility HD (≥5 times per week, any hours per session), conventional home HD, quasi-intensive home HD, intensive home HD, peritoneal dialysis, deceased donor kidney transplantation, and living donor kidney transplantation. Patient mortality, with a 3-month lag in primary analyses and 6- and 12-month lags in sensitivity analyses. Conventional facility HD was the reference group. Conventional home HD had a similar mortality risk. For quasi-intensive home HD, mortality risk was lower (HR, 0.56; 95% CI, 0.44-0.73). For intensive home HD, mortality risk was nonsignificantly lower in primary analyses and significantly lower using a 6-month lag (HR, 0.41; 95% CI, 0.20-0.85), but not using a 12-month lag. For quasi-intensive facility HD, mortality risk was nonsignificantly lower in primary analyses, although significantly lower using 6- (HR, 0.41; 95% CI, 0.20-0.85) and 12-month lags (HR, 0.59; 95% CI, 0.44-0.80). Mortality risk was similar between intensive and conventional facility HD. For peritoneal dialysis, mortality risk was greater than for conventional facility HD (HR, 1.07; 95% CI, 1.03-1.12). Kidney transplantation had the lowest mortality risk. Potential residual confounding from limited collection of comorbid condition, socioeconomic, and medication data. There is an emerging HD dose-effect in Australia and New Zealand, with lower mortality risks associated with some of the more intensive HD regimens in these countries.

Admixture between native and invasive populations may increase invasiveness ofMimulus guttatus

Self-fertilization and admixture of genotypes from different populations can have major fitness consequences in native species. However, few studies have addressed their potential roles in invasive species. Here, we used plants of Mimulus guttatus from seven native North American, three invasive Scottish and four invasive New Zealand populations to address this. We created seeds from self-fertilization, within-population outcrossing, between-population outcrossing within the same range, and outcrossing between the native and invasive ranges. A greenhouse experiment showed that native and invasive plants of M. guttatus suffered to similar degrees from inbreeding depression, in terms of asexual reproduction and biomass production. After outcrossing with plants from other populations, M. guttatus benefited from heterosis, in terms of asexual and sexual reproduction, and biomass production, particularly when plants from native and invasive populations were crossed. This suggests that, when novel genotypes of M. guttatus from the native North American range will be introduced to the invasive ranges, subsequent outcrossing with M. guttatus plants that are already there might further boost invasiveness of this species.

Phylogeographic Structure in Penguin Ticks across an Ocean Basin Indicates Allopatric Divergence and Rare Trans-Oceanic Dispersal.

The association of ticks (Acarina) and seabirds provides an intriguing system for assessing the influence of long-distance dispersal on the evolution of parasitic species. Recent research has focused on host-parasite evolutionary relationships and dispersal capacity of ticks parasitising flighted seabirds. Evolutionary research on the ticks of non-flighted seabirds is, in contrast, scarce. We conducted the first phylogeographic investigation of a hard tick species (Ixodes eudyptidis) that parasitises the Little Blue Penguin (Eudyptula minor). Using one nuclear (28S) and two mitochondrial (COI and 16S) markers, we assessed genetic diversity among several populations in Australia and a single population on the South Island of New Zealand. Our results reveal two deeply divergent lineages, possibly representing different species: one comprising all New Zealand samples and some from Australia, and the other representing all other samples from Australian sites. No significant population differentiation was observed among any Australian sites from within each major clade, even those separated by hundreds of kilometres of coastline. In contrast, the New Zealand population was significantly different to all samples from Australia. Our phylogenetic results suggest that the New Zealand and Australian populations are effectively isolated from each other; although rare long-distance dispersal events must occur, these are insufficient to maintain trans-Tasman gene flow. Despite the evidence for limited dispersal of penguin ticks between Australia and New Zealand, we found no evidence to suggest that ticks are unable to disperse shorter distances at sea with their hosts, with no pattern of population differentiation found among Australian sites. Our results suggest that terrestrial seabird parasites may be quite capable of short-distance movements, but only sporadic longer-distance (trans-oceanic) dispersal.

An initial genetic characterisation of the grape powdery mildew (&lt;i&gt;Erysiphe necator&lt;/i&gt;) in New Zealand associated with recent reports of the sexual stage

The asexual form of the grape powdery mildew Erysiphe necator has been present in New Zealand for over 100 years In 2013 the sexual stage was reported for the first time in vineyards in Hawkes Bay associated with increased disease issues This paper presents an initial genetic analysis of New Zealand populations compared to known populations overseas and tentatively identifies two haplotypes new to New Zealand Initial analysis of matingtype ratios indicates only one of these haplotypes is sexually reproducing A better understanding of the fundamental character of the New Zealand populations of Erysiphe necator is needed before an accurate assessment can be made of the practical impact that the introduction of the sexual stage has had on disease incidence and control

Phylodynamic evidence of the migration of turnip mosaic potyvirus from Europe to Australia and New Zealand.

Turnip mosaic virus (TuMV) is a potyvirus that is transmitted by aphids and infects a wide range of plant species. We investigated the evolution of this pathogen by collecting 32 isolates of TuMV, mostly from Brassicaceae plants, in Australia and New Zealand. We performed a variety of sequence-based phylogenetic and population genetic analyses of the complete genomic sequences and of three non-recombinogenic regions of those sequences. The substitution rates, divergence times and phylogeographical patterns of the virus populations were estimated. Six inter- and seven intralineage recombination-type patterns were found in the genomes of the Australian and New Zealand isolates, and all were novel. Only one recombination-type pattern has been found in both countries. The Australian and New Zealand populations were genetically different, and were different from the European and Asian populations. Our Bayesian coalescent analyses, based on a combination of novel and published sequence data from three non-recombinogenic protein-encoding regions, showed that TuMV probably started to migrate from Europe to Australia and New Zealand more than 80 years ago, and that distinct populations arose as a result of evolutionary drivers such as recombination. The basal-B2 subpopulation in Australia and New Zealand seems to be older than those of the world-B2 and -B3 populations. To our knowledge, our study presents the first population genetic analysis of TuMV in Australia and New Zealand. We have shown that the time of migration of TuMV correlates well with the establishment of agriculture and migration of Europeans to these countries.