Zealand Fish Research Articles

Contrasting influence of flow regime on freshwater fishes displaying diadromous and nondiadromous life histories

AbstractFlow variability structures freshwater fish community traits and life‐history patterns such as migration patterns between fresh and saltwater (diadromy). Few studies, however, have explored relationships between diadromy and flow regime while accounting for other abiotic covariables. The present paper used canonical ordinations to remove the shared variation between groups of explanatory variables that explain variation in fish communities and examine two objectives with New Zealand fishes: (i) to compare the unique contributions of Hydrological Regime, Climate, Habitat and Spatial‐Seasonal data sets to the variation of diadromous and nondiadromous fishes and (ii) to compare the relative contributions of a Hydrological Variability and Low‐Flow data set to community structure of both life‐history patterns. All explanatory variables explained a total of 20.15% and 29.58% of the variation in diadromous and nondiadromous fishes, respectively. Objective 1 analyses showed that the largest unique component of variation was explained by Hydrological Regime for nondiadromous fishes (12.17%), while Climate uniquely explained the most variation in diadromous fishes (4.3%), followed closely by Hydrological Regime (3.08%). Objective 2 analyses showed that Hydrological Variability uniquely explained five and 11 times more variation than the Low‐Flow data set in diadromous and nondiadromous fishes, respectively. Findings illustrate the importance of hydrological regime to New Zealand freshwater fishes. Specifically, aspects of hydrological variability uniquely account for more variation than aspects of low flow. Differing relative influences of hydrology between life‐history patterns suggest that diadromy may mediate the influence of flow regime. Results outline difficulties for environmental flow settings when biota display differing life histories.

A standardised sampling protocol for robust assessment of reach-scale fish community diversity in wadeable New Zealand streams

The New Zealand fish fauna contains species that are affected not only by river system connectivity, but also by catchment and local-scale changes in landcover, water quality and habitat quality. Consequently, native fish have potential as multi-scale bioindicators of human pressure on stream ecosystems, yet no standardised, repeatable and scientifically defensible methods currently exist for effectively quantifying their abundance or diversity in New Zealand stream reaches. Here we report on the testing of a back-pack electrofishing method, modified from that used by the United States Environmental Protection Agency, on a wide variety of wadeable stream reaches throughout New Zealand. Seventy-three first- to third-order stream reaches were fished with a single pass over 150–345 m length. Time taken to sample a reach using single-pass electrofishing ranged from 1–8 h. Species accumulation curves indicated that, irrespective of location, continuous sampling of 150 stream metres is required to accurately describe reach-scale fish species richness using this approach. Additional species detection beyond 150 m was rare (<10%) with a single additional species detected at only two out of the 17 reaches sampled beyond this distance. A positive relationship was also evident between species detection and area fished, although stream length rather than area appeared to be the better predictor. The method tested provides a standardised and repeatable approach for regional and/or national reporting on the state of New Zealand's freshwater fish communities and trends in richness and abundance over time.

A rapid method for the isolation of eicosapentaenoic acid-producing marine bacteria

Bacterial production of long chain polyunsaturated fatty acids (LC-PUFAs) is a promising biotechnological approach for the mass production of these valuable compounds, but extensive screening is currently needed to select a strain that meets industrial requirements. A method was developed for the rapid screening and isolation of eicosapentaenoic acid (EPA)-producing marine bacteria from mixed cultures using the dye 2,3,5-triphenyltetrazolium chloride (TTC). The method was first validated using two bacteria from the Shewanella genus, S. gelidimarina (known to contain EPA) and S. fidelis (known not to contain EPA), and subsequently applied to a range of bacterial samples collected from seven randomly selected New Zealand fish species. By incorporating TTC in both solid and liquid state fermentation treatments, a clear association between the reduction of TTC to the red-coloured triphenyl formazan (TF) and the presence of EPA within Gram-negative bacteria was confirmed. Incubation in 0.1% w/v TTC was optimal for colour response and cell growth in agar plates and liquid cultures. Bacteria that produce EPA reduced TTC to TF, but a number of non-EPA-producing bacteria also showed this capacity. By conducting a subsequent Gram staining, all EPA-producing strains were revealed to be G (−) rod bacteria while the non-producing ones were all G (+) cocci. The fatty acid methyl esters of the isolated bacteria that reduced TTC to TF were analysed using gas chromatography–mass spectrometry and the content of EPA was confirmed by gas chromatography. From a pool of 2.0 × 10 8 CFU/ml, this method allowed the rapid isolation of 16 bacteria capable of producing EPA. This new approach significantly reduces the number of samples submitted for GC analysis and therefore the time, effort and cost of screening and isolating strains of EPA-producing marine bacteria.

Trematode infection causes malformations and population effects in a declining New Zealand fish

1. Animal malformations engender wide public and scientific concern because of associated environmental health risks. This is highlighted by increased incidence of limb malformations in amphibians associated with trematode infections and disturbance. Malformations may signal new emerging disease threats, but whether the phenomenon is broadly applicable across taxa, or has population-scale impacts, is unknown. 2. Malformations are widely reported in fish and, until now, have been attributed mainly to contaminants. We tested whether the trematode Telogaster opisthorchis caused severe malformations, leading to population effects, in Galaxias anomalus, a threatened New Zealand freshwater fish. 3. Experimental infection of larval fish caused increasing spinal malformation and mortality with infection intensity that closely matched field patterns. Field malformation frequency peaked in January (65%), before declining sharply in February (25%) and remaining low thereafter. 4. The peak occurred during a 'critical window' of larval development, with the decline coincident with a population crash, indicating that malformation was causing mortality in the field. 5. The occurrence of such critical developmental windows may explain why this mechanism of population impact has been overlooked. With global environmental stressors predicted to enhance trematode infections, our results show that parasite-induced malformation, and its population-scale impacts, could be more widespread than previously considered.

Has the introduction of brown trout altered disease patterns in native New Zealand fish?

Summary1. It is well recognised that non‐indigenous species (NIS) can affect native communities via the ‘spillover’ of introduced parasites. However, two other potentially important processes, the ‘spillback’ of native parasites from a competent NIS host, where the latter acts as a reservoir leading to amplified infection in native hosts, and the ‘dilution’ of parasitism by a NIS host acting as a sink for native parasites, have either not been tested or largely overlooked.2. We surveyed the helminth parasite fauna of native New Zealand fish in Otago streams that varied in the abundance of introduced brown troutSalmo trutta, to look for evidence of spillback and/or dilution. Spillover is not an issue in this system, with trout introduced as parasite‐free eggs.3. Seven native parasite species were present across 12 sites; significant inverse relationships with an index of trout abundance (i.e. dilution) were documented for three species infecting the native upland bullyGobiomorphus breviceps, and one species infecting the native roundhead galaxiasGalaxias anomalus.4. An inverse relationship between bully energy status and infection intensity of one parasite species suggests that parasite dilution could have positive effects on bully populations. Our failure to detect similar relationships for the other parasites does not preclude the possibility that dilution is beneficial to native fish, since parasites may have subtle or unmeasured impacts.5. The parasite dilution patterns reported are compelling in that they occurred across several native host and parasite species; as such they have important implications for invasion ecology, providing an interesting contrast to the largely negative impacts reported for NIS. Mechanisms potentially responsible for the patterns observed are discussed.

Effect of Processing Conditions on Trace Elements in Fish Roe from Six Commercial New Zealand Fish Species

The concentrations of trace elements in fish roes and the effect of processing conditions (karasumi-like or karashi mentaiko) were investigated in six commercial fish species from New Zealand. The studied elements were As, Cd, Cr, Cu, Hg, Pb, and Zn, and the roes were from the following species: chinook salmon ( Oncorhynchus tshawytscha), hoki ( Macruronus novaezelandiae), southern blue whiting ( Micromesistius australis), hake ( Merluccius australis), blue warehou ( Seriolella brama), and barracouta ( Thyrsites atun). The concentrations of As, Cd, Cr, Hg, and Pb in the roes were lower than literature values for fish muscles. Only Zn in barracouta roe and Cu in salmon roe and their products were relatively higher than the generally accepted levels in fish muscles and could be of safety concern. Hence, the consumption of barracouta and salmon roes among certain parts of the population needs to be monitored and assessed. Dry salting (karasumi-like) processing increased ( P < 0.001) the concentrations of the studied trace elements while salting fermentation (karashi mentaiko) processing tended to decrease the levels of trace elements. Fermentation may be a useful process to decrease the level of toxic trace elements.

Is cold the new hot? Elevated ubiquitin-conjugated protein levels in tissues of Antarctic fish as evidence for cold-denaturation of proteins in vivo

Levels of ubiquitin (Ub)-conjugated proteins, as an index of misfolded or damaged proteins, were measured in notothenioid fishes, with both Antarctic (Trematomus bernacchii, T. pennellii, Pagothenia borchgrevinki) and non-Antarctic (Notothenia angustata, Bovichtus variegatus) distributions, as well as non-notothenioid fish from the Antarctic (Lycodichthys dearborni, Family Zoarcidae) and New Zealand (Bellapiscis medius, Family Tripterygiidae), in an effort to better understand the effect that inhabiting a sub-zero environment has on maintaining the integrity of the cellular protein pool. Overall, levels of Ub-conjugated proteins in cold-adapted Antarctic fishes were significantly higher than New Zealand fishes in gill, liver, heart and spleen tissues suggesting that life at sub-zero temperatures impacts protein homeostasis. The highest tissue levels of ubiquitinated proteins were found in the spleen of all fish. Ub conjugate levels in the New Zealand N. angustata, more closely resembled levels measured in other Antarctic fishes than levels measured in other New Zealand species, likely reflecting their recent shared ancestry with Antarctic notothenioids.

Refuge‐use strategies of stream fishes in response to extreme low flows

Low flows were simulated in an artificial stream to determine the refuge‐use strategies of two benthic New Zealand fish species, Canterbury galaxias Galaxias vulgaris and upland bullies Gobiomorphus breviceps, and to investigate how refuge availability and the rate of flow recession affect the type and incidence of refuge use. When riffles dewatered, upland bullies tended to move to runs, whereas Canterbury galaxias showed a stronger propensity to burrow into the substratum. Both species showed a strong and consistent tendency to move upstream when emigrating from riffles. Burrowing was more frequent on coarse substrata and during rapid flow recessions. The incidence of surface stranding increased with the rate of flow recession, but only when interstitial refugia were unavailable, and was higher on gravel than on cobble substrata. The effect of rate of flow recession and substratum size on the probability of stranding depended upon the type of refuge‐use strategy adopted by the fishes. Rate of flow recession affected upland bullies more than Canterbury galaxias, whereas substratum size affected Canterbury galaxias more than upland bullies. These results suggest that the impact of disturbance is contingent upon species‐specific refuge‐use strategies, which result from interplay between refuge availability, the nature of the disturbance and species’ behaviours and morphologies. When component species adopt contrasting refuge‐use strategies, disturbance events may not consistently favour one species over another but rather inflict species‐specific mortality that varies both temporally and spatially.

Revision of the genus Bdellamaris (Hirudinea: Piscicolidae) including a new combination, Bdellamaris manteri

The New Zealand fish leech genus Bdellamaris was revised and a redescription of the type species, Bdellamaris eptatreti, was made using material from Eptatretus cirrhatus, the type host for B. eptatreti. Since the holotype has been lost and paratypes exist only in the form of frontal sections of approximately one third of a leech, a neotype was designated. Individuals in Bdellamaris lack eyes, ocelli, and conducting tissue and possess 11 pairs of pulsatile vesicles, 6 pairs of testisacs, accessory gland cells on the terminal portion of the male reproductive system, and a seminal receptacle. Bdellamaris eptatreti is characterised by a uniformly unpigmented body and suckers yielding a white overall appearance. Makarabdella manteri is transferred to the genus Bdellamaris after study of the type specimen and new material collected from the Chatham Rise, New Zealand. This species is characterised by its small size and by orange transverse pigment bands.

Distance‐Based Tests for Homogeneity of Multivariate Dispersions

The traditional likelihood-based test for differences in multivariate dispersions is known to be sensitive to nonnormality. It is also impossible to use when the number of variables exceeds the number of observations. Many biological and ecological data sets have many variables, are highly skewed, and are zero-inflated. The traditional test and even some more robust alternatives are also unreasonable in many contexts where measures of dispersion based on a non-Euclidean dissimilarity would be more appropriate. Distance-based tests of homogeneity of multivariate dispersions, which can be based on any dissimilarity measure of choice, are proposed here. They rely on the rotational invariance of either the multivariate centroid or the spatial median to obtain measures of spread using principal coordinate axes. The tests are straightforward multivariate extensions of Levene's test, with P-values obtained either using the traditional F-distribution or using permutation of either least-squares or LAD residuals. Examples illustrate the utility of the approach, including the analysis of stabilizing selection in sparrows, biodiversity of New Zealand fish assemblages, and the response of Indonesian reef corals to an El Niño. Monte Carlo simulations from the real data sets show that the distance-based tests are robust and powerful for relevant alternative hypotheses of real differences in spread.

Application of the Index of Biotic Integrity Methodology to New Zealand Freshwater Fish Communities

An index of biotic integrity (IBI) was developed for freshwater fish in New Zealand streams. Data on freshwater fish occurrence for 5497 sites over the entire country were obtained from the New Zealand freshwater fish database for the period 1980-2002. Environmental habitat descriptors for the stream watersheds above or at each of these sites were obtained from an existing river environment classification using a geographic information system. Of the many IBI metrics in use globally, only six were adapted and applied because of differences between the fish fauna of New Zealand and the United States. A number of evaluation methods showed that all six metrics contributed to the overall IBI scores with high levels of consistency. The IBI assessment of sites sampled at different times showed high levels of temporal concordance. The IBI scores differed significantly among the geological areas, the sampling method used, and the year of survey. Overall, the results presented demonstrate the potential for New Zealand freshwater fish to be used to assess river condition at large spatial scales in New Zealand in the absence of specifically selected reference sites. This application demonstrates the effectiveness of the IBI approach even with a fauna of limited diversity and limited ecological specialisation as in the New Zealand fish fauna.

Constitutive roles for inducible genes: evidence for the alteration in expression of the inducible hsp70 gene in Antarctic notothenioid fishes.

Previous research on the Antarctic notothenioid fish Trematomus bernacchii demonstrated the loss of the heat shock response (HSR), a classical cellular defense mechanism against thermal stress, characterized by the rapid synthesis of heat shock proteins (Hsps). In the current study, we examined potential mechanisms for the apparent loss of the HSR in Antarctic notothenioids and, in addition, compared expression patterns of two genes from the 70-kDa Hsp family (hsc71 and hsp70) in tissues from T. bernacchii to expression patterns in tissues of two closely related temperate notothenioid fishes from New Zealand, Bovichtus variegatus and Notothenia angustata. The results showed that transcript for both the constitutive and inducible genes in the Hsp70 gene family were expressed in detectable levels in all three species. However, only the cold-temperate New Zealand fishes displayed the ability to upregulate the inducible transcript, hsp70. Although hsp70 was present in detectable levels in several tissues of the Antarctic notothen T. bernacchii, in vitro thermal stresses failed to produce a significant increase in mRNA levels. In all species, the expression of the constitutive transcript hsc71 was variable and nonresponsive to temperature increases, even at temperatures as high as 10 degrees C above the ecologically relevant range for the species under study. Field-collected tissues from T. bernacchii (sampled immediately after capture) indicated that hsp70 mRNA was expressed at high levels in field-acclimatized fishes. Thus upregulation of molecular chaperones suggested that low-temperature stress may be significantly denaturing to cellular proteins in Antarctic fish, an observation that was supported by elevated levels of ubiquitin-conjugated protein.

Parasite species richness in New Zealand fishes: a grossly underestimated component of biodiversity?

ABSTRACTEstimates of total parasite species richness, for given host groups in given geographical areas, are always much higher than the numbers of known parasite species on which they are based. The discrepancy is a reflection of our limited current knowledge of parasite diversity. This is illustrated by a comparison of the parasite faunas of New Zealand fish species with those of Canadian fish; the latter have been well studied by fish parasitologists, and provide a standard for comparisons. More parasite species are known per host species for Canadian fish than for New Zealand fish, for both marine and freshwater fishes. This difference remains after correcting for differences in study effort, i.e. in the number of published studies per fish species. There are also more parasite species per fish species in Canada than in New Zealand when parasite species richness is expressed as number of species per unit of host body length. For freshwater fish, the difference can be explained by the restricted phylogenetic origins and geographical isolation of New Zealand fish species. For marine fish, however, there is no a priori reason to expect a difference in parasite species richness between fish in New Zealand and Canadian waters, and the observed difference probably results from a lack of appropriate parasitological surveys in New Zealand. If the true species richness of the parasite faunas of New Zealand marine fish species approaches that of their Canadian counterparts, then most of the diversity and ecosystem function of fish parasites in New Zealand remains unknown.

Total mercury and methylmercury levels in some New Zealand commercial marine fish species

Two groups of samples spanning 16 years are reported for methylmercury and total mercury. All the samples had been taken from commercial catches and represent 33 different commercially important New Zealand marine fish species. Results show the New Zealand fish species sampled have mean contents of total mercury that range between 0.02 and 2.48 mg kg-1 and mean contents of methylmercury that range from less than 0.04 to 1.97 mg kg-1.

The Relationship between Red Cod, Pseudophycis Bachus, Recruitment and Environmental Variables in New Zealand

This paper examines the relationship between red cod, Pseudophycis bachus, recruitment and selected environmental variables. Commercial catch data of red cod were used as indices of relative recruitment strength for New Zealand fish stocks (east coast South Island, RCO 3; west coast South Island, RCO 7). Analysis of catch per unit effort (CPUE) supports the assumption that fluctuations in commercial catches reflect changes in abundance resulting from variable recruitment. Catch was assessed against 34 environmental variables that included the Southern Oscillation index, sea surface temperature, weather types, wind speed and direction, and river flows. Lagged correlations were calculated between annual commercial catch and averaged environmental data. Variables most strongly correlated with commercial catch were included in regression analyses. Regression models were calculated using all available data in its raw form, and after application of a logarithmic transformation. Robustness, and forecast skill was tested using a repeated leave-one-out procedure. The strongest correlations between commercial catch and explanatory variables for both RCO 3 and RCO 7 were consistently with sea surface temperature over a wide range of time lags followed by frequencies of southwest and northeast flow patterns. The correlations generally operated in the sense that ‘colder is better’: negative correlations (∼−0.75) with sea surface temperature, positive with the occurrence of cool southwest weather types, negative with the occurrence of warm northeast weather types. The maximum magnitude of the correlation occurs at 14-month lag for both fisheries, corresponding to the late spring/summer of the year prior to the catch year. There were often secondary maxima in the magnitude of the correlations two or three years prior to the catch year. The commercial fishery is made up largely of two and three-year-old fish, implying that juvenile fish (age ∼ one year) are most sensitive to environmental conditions, but egg, embryo and larva periods may also be affected. Regression analyses suggest that two-predictor regressions were unstable, with often large decreases in explained variance when applied to the independent years, however, at the lags when relationships are strongest (around 14 months), the explained variance on the left-out years remains high. Fluctuations in red cod landings are dependent on sea surface temperature, controlled largely by climatic variability, including El Nino and La Nina events. For short-lived species such as red cod, fluctuations in annual landings are commonplace and analyses of environmental data may be useful in predicting catches in subsequent years.

Habitat use and longitudinal distribution patterns of native fish from a near pristine Stewart Island, New Zealand, stream

Distribution, abundance, and habitat preferences of native fish were investigated down the length of a relatively pristine, medium‐sized, fourth‐order stream on Stewart Island, New Zealand. A limited fish fauna was recorded (six species), including three threatened large galaxiid species (Galaxias argenteus, Galaxias fasciatus, and Galaxias brevipinnis), which have restricted distributions on mainland New Zealand. Results indicated that these large galaxiids occupy diverse habitats including pools and backwaters within the mainstems of this stream. Their extensive distributions and wide habitat usage were attributed to factors such as the intact catchment vegetation, unmodified stream channel, and the absence of introduced fishes, particularly salmonids. Results suggest that some native species have been excluded from mainstem habitats elsewhere in New Zealand. It was also evident that interactions among the native species influenced habitat use; G. brevipinnis avoided backwaters, runs, and pools in reaches occupied by G. fasciatus and Anguilla dieffenbachii; whereas G. fasciatus appeared to avoid habitats occupied by G. argenteus and A dieffenbachii. Maximum densities and biomass of galaxiids and eels occurred in deepwater habitats (>0.75 m). Furthermore the fish inhabiting these deeper waters were larger and more likely to be female. These findings have significant implications for the design and application of sampling protocols for native New Zealand fishes and for the protection of their habitats. If deeper waters are not sampled then species, sex, and size biased data may result.

Technical background to fish stock indicators for state-of-environment reporting in New Zealand

Pressure–state–response environmental indicators are proposed for New Zealand fish stocks. This workwas a technical background to the development of a core set of indicators sought by the Ministry for the Environment. It has led, through an extensive programme of consultation, to a set of confirmed indicators. The initial proposals and their basis are described together with their relationship to the confirmed indicators. The proposed indicators could readily be calculated as part of the stock assessments conducted annually by the Ministry of Fisheries and this is recommended. For many stocks, especially minor stocks, only proxies for the preferred indicators would be possible. The proxy indicators would not be useful in all cases, and target or threshold values for them could generally not be calculated. Shortcomings and difficulties in the proposed indicators are described. A state indicator that separates changes induced by fishing from those of a natural origin is described, but it could be obtained for only a few stocks.

Anisakis (Nematoda) in some New Zealand inshore fish

The prevalence, intensity, abundance, and density of Anisakis larval infection of four species of New Zealand fish and one species of squid were determined. In order of intensity of infection these were: barracouta (Thyristes atun), tarakihi (Nemadactylus macropterus), red cod (Pseudophycis bachus), red gurnard (Chelidonichthys kumu), and arrow squid (Nototodarus solanii). Some data on infections in monkfish (Kathetostoma giganteum) are also presented. There was no evidence of postmortem migration of larvae in red cod, red gurnard, or barracouta. The larvae did excapsulate postmortem and the excapsulation was less in fish kept on ice. The majority of larvae were associated with the visceral organs and membranes (98.5% or more of the total worm burden). However, a proportion of all fish species examined had small numbers of larvae in the fillets and these may pose a risk to human health.

The Influence of Non-Host Predators on Parasite-Induced Behavioral Changes in a Freshwater Snail

Parasites can have striking influences on their host's behavior that serve to increase the probability of parasite transmission. The type of behavior induced often increases the probability of an encounter with the next host in the life cycle. However non-host predators could also serve as selective forces on the manipulative strategy of the parasite. In this study, I examined the daily foraging behavior of a New Zealand fish (Gobiomorphus cotidianus), and related it to the foraging habits of a snail (Potamopyrgus antipodarum) infected with the trematode Microphallus sp. Previous results have demonstrated that Microphallus alters the snails' behavior in a time-specific manner: infected individuals forage on the top of rocks late into the morning, when the final host (waterfowl) is feeding most, and then move to the bottom of the rocks. Since waterfowl continue to forage (albeit at a lower rate) throughout the day, the infected snails' movement to the bottom of the rocks is perplexing. Here I examined the gut contents of fish collected at different times of the day. I found that fish feed on snails predominantly in the late morning to early afternoon hours, which corresponds to the time that infected snails move to the bottom of the rocks. I also found that snails taken from fish guts are less likely to be infected by Microphallus than snails from the overall population. Thus it would appear that the behavior induced by Microphallus decreases the probability that an infected snail will be eaten by an unsuitable host.

Biochemical genetics and recognition of a western stock of the common gemfish, Rexea solandri (Scombroidea : Gempylidae), in Australia

Protein electrophoresis and analysis of restriction fragment polymorphism in mitochondrial DNA (mtDNA) provided information on population/stock structure of Rexea solandri. Two distinct Australian stocks are evident, with one (AAT-2) of 36 enzymatic loci and all 11 mtDNA digestion profiles showing highly significant differences between eastern and southern/western Australian specimens. The split is at the western end of Bass Strait, with limited mixing off western Tasmania. No external characters were found that would allow determination of the provenance of an individual fish. Stock distinction between eastern Australian and New Zealand fish is less clear; some differences, usually statistically non-significant, in genetic frequencies were found and some rare allozymic or restriction fragment variants were found in one or other but not both regions. Estimates of gene flow suggest that only tens of individuals per generation migrate between the regions. In an experiment on tissue deterioration, after six days of exposure out of doors, significant amounts of intact mtDNA were present in all tissues, and all fragments of the HINF 1 phenotype were clearly scorable. Of 19 enzymes tested, only three showed reduced activity on Day 6. Gonad and muscle tissues were more resistant to degradation than was liver tissue.