We have analyzed the distribution feature of Bouguer gravity anomalies in the Yinshan Mountains and its neighboring areas of Inner Mongolia. We find that this feature is in “synchronous” agreement with the elevation in the Yinshan Mountain, Daqing Mountain, and the Hu-Bao basin areas. On the aeromagnetic anomaly map, the Yinshan area is of large-scale negative anomalies and the Hu-Bao basin is of large-amplitude positive anomalies. Through analysis of earthquake, magnetotelluric, and gravity data, we establish a model of the crustal structure for the Yinshan Mountains and the Hu-Bao basin. The result shows that the lower boundary of the crust (Moho interface) below this region has no evident downward concave or upward convex shape. And the northern margin of the basin is presumably a contact zone between two large tectonic blocks. These structural characters can explain the causes of the special variations of gravity and magnetic anomalies in the Yinshan Mountains and the Hu-Bao basin.