Yellowstone Cutthroat Trout Research Articles

An Invasive Predator Substantially Alters Energy Flux Without Changing Food Web Functional State or Stability

ABSTRACTUnderstanding how invasive species affect the stability and function of ecosystems is critical for conservation. Here, we quantified the effect of an actively suppressed invasive species on the Yellowstone Lake ecosystem using a food web energetics approach. We compared energy flux, functional state, and stability of four food web states: a pre‐invasion network and three post‐invasion networks undergoing active invasive species suppression, namely, initial invasion, expansion, and decline. Invasion caused ≥ 25% change (±) in energy flux for most consumers, and total flux increased twofold post‐invasion. Flux to the species of conservation concern, Yellowstone cutthroat trout (Oncorhynchus virginalis bouvieri), was 2.8 times less post‐invasion versus pre‐invasion, whereas invasive lake trout (Salvelinus namaycush) flux was up to 17.3 times higher compared to the initial invasion network. The dominant functional state and food web stability did not change post‐invasion, likely due to introduction of a generalist predator and the stabilizing effect of suppression. Lake trout invasion in Yellowstone Lake caused large changes to energy flux, shifting dominant fluxes away from the species of conservation concern, despite not changing functional state or stability. We demonstrate that changes in energy flux may signal invasions in ecosystems, but functional state or stability may not necessarily reflect the magnitude of invasion influences. For invaded fish communities, a better understanding of how the invasive species control the food web beyond just the direct influence on prey can be achieved by investigating energy flux, functional state, and food web stability. Furthermore, evaluating the effect of suppression beyond the invasive species can demonstrate the far‐reaching value of suppression management actions for conservation.

Allometric shifts in foraging site selection and area increase energy intake for Yellowstone Cutthroat Trout but are constrained by functional limits to prey capture

AbstractObjectiveFor foraging animals, energy acquisition is often influenced by an interaction of prey abundance and the amount of space needed to capture sufficient food. Suitable habitat includes those locations where prey capture rates are sufficient to meet energetic requirements for growth and reproduction. Hence, quantifying how space use changes with energy requirements and how prey densities affect prey capture rates in foraging animals provides insight into the mechanisms that create suitable habitat. Here, we were interested in assessing how body size influences foraging site selection, space use, and energy intake by Yellowstone Cutthroat Trout Oncorhynchus virginalis bouvieri. Furthermore, we sought to quantify how foraging rates changed with increasing levels of food.MethodsWe recorded Yellowstone Cutthroat Trout foraging behavior in natural streams and measured space use and foraging rates using three‐dimensional videography.ResultWe found that physical habitat features, such as current velocity, water depth, and foraging distance, were positively correlated with fish body size, but when foraging area was compared to a model of space use, we found that Yellowstone Cutthroat Trout used less space to capture prey than the model predicted. Fish foraging rates and estimated energy intake also increased with increasing prey availability; however, trout captured prey according to a type II functional response, indicating an upper limit to prey capture from handling time constraints.ConclusionThese data demonstrate that Yellowstone Cutthroat Trout display allometric changes in foraging habitat use: larger fish can occupy deeper and faster areas that increase prey encounter rates, but as prey encounter rates increase, the foraging rates become limited by an individual's ability to identify, pursue, and handle prey items.

Interspecific hybridization in a large‐river population of Yellowstone Cutthroat Trout: A 20‐year programmatic evaluation

Interspecific hybridization in a large‐river population of Yellowstone Cutthroat Trout: A 20‐year programmatic evaluation

Using de novo transcriptomes to decipher the relationships in cutthroat trout subspecies (Oncorhynchus clarkii).

For almost 200 years, the taxonomy of cutthroat trout (Oncorhynchus clarkii), a salmonid native to Western North America, has been in flux as ichthyologists and fisheries biologists have tried to describe the diversity within these fishes. Starting in the 1950s, Robert Behnke reexamined the cutthroat trout and identified 14 subspecies based on morphological traits, Pleistocene events, and modern geographic ranges. His designations became instrumental in recognizing and preserving the remaining diversity of cutthroat trout. Over time, molecular techniques (i.e. karyotypes, allozymes, mitochondrial DNA, SNPs, and microsatellite arrays) have largely reinforced Behnke's phylogenies, but have also revealed that some relationships are consistently weakly supported. To further resolve these relationships, we generated de novo transcriptomes for nine cutthroat subspecies, as well as a Bear River Bonneville form and two Colorado River lineages (blue and green). We present phylogenies of these subspecies generated from multiple sets of orthologous genes extracted from our transcriptomes. We confirm many of the relationships identified in previous morphological and molecular studies, as well as discuss the importance of significant differences apparent in our phylogenies from these studies within a geological perspective. Specific findings include three distinct clades: (1) Bear River Bonneville form and Yellowstone cutthroat trout; (2) Bonneville cutthroat trout (n = 2); and (3) Greenback and Rio Grande cutthroat trout. We also identify potential gene transfer between Bonneville cutthroat trout and a population of Colorado River green lineage cutthroat trout. Using these findings, it appears that additional groups warrant species-level consideration if other recent species elevations are retained.

Onset of climate‐change impact on the renowned Oncorhynchus metapopulation of Yellowstone Lake revealed by Leslie modeling of annual gill‐net catches

AbstractThe native Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri; YCT) of Yellowstone Lake, Yellowstone National Park, Wyoming, USA, comprise a metapopulation that inhabits an ecologically simple and uniquely pristine environment. A recent study Bayesian fit an age‐structured Leslie model that had a local climate index (total annual mean‐daily air temperatures >0°C at the lake's north shore) as its only driver (regulating age‐0 YCT survival) to data for a key YCT spawning stock (median fish age, 5 years) from 1977 to 1992, before predation from an illegally introduced and growing lake trout (Salvelinus namaycush) population (1994 discovery) measurably affected YCT population dynamics. Results showed the new climate regime that began in the late 1970s had an overarching effect and largely explained declining spawning runs, although a growing predation effect became evident near lake trout discovery and quickly became the major YCT population driver. In the present study, that model was likewise fitted to estimated abundances of age‐5 YCT (~75% mature) that had been annually (also 1977–1992) gill‐netted from Yellowstone Lake and thus characterized the metapopulation. Results showed age‐0 YCT survival declined when a climate index of 1440 was reached and exceeded. Metapopulation recovery to historically high levels requires that the climate index decline to and remain near or below 1440 and—as shown by another recent study—that the lake trout population be reduced to its mid‐1990s levels. The most recent time of evident YCT metapopulation persistence at historically high levels and broadest spatial extent occurred under those simultaneous conditions.

Yellowstone Cutthroat Trout Recovery in Yellowstone Lake: Complex Interactions Among Invasive Species Suppression, Disease, and Climate Change

In Yellowstone Lake, Wyoming, the largest inland population of nonhybridized Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri, hereafter Cutthroat Trout, declined throughout the 2000s because of predation from invasive Lake Trout Salvelinus namaycush, drought, and whirling disease Myxobolus cerebralis. To maintain ecosystem function and conserve Cutthroat Trout, a Lake Trout gill netting suppression program was established in 1995, decreasing Lake Trout abundance and biomass. Yet, the response of Cutthroat Trout to varying Lake Trout suppression levels, collectively with the influence of disease and climate, is unknown. We developed an ecosystem model (calibrated to historical data) to forecast (2020–2050) whether Cutthroat Trout would achieve recovery benchmarks given disease, varying suppression effort, and climate change. Lake Trout suppression influenced Cutthroat Trout recovery; current suppression effort levels resulted in Cutthroat Trout recovering from historical lows in the early 2000s. However, Cutthroat Trout did not achieve conservation benchmarks when incorporating the influence of disease and climate. Therefore, the National Park Service intends to incorporate age‐specific abundance, spawner biomass, or both in conservation benchmarks to provide better indication of how management actions and environmental conditions influence Cutthroat Trout. Our results illustrate how complex interactions within an ecosystem must be simultaneously considered to establish and achieve realistic benchmarks for species of conservation concern.

Using social-ecological models to explore stream connectivity outcomes for stakeholders and Yellowstone cutthroat trout.

Despite growing interest in conservation and re-establishment of ecological connectivity, few studies have explored its context-specific social-ecological outcomes. We aimed to explore social and ecological outcomes to changing stream connectivity for both stakeholders and native fish species impacted by habitat fragmentation and nonnative species. We (1) investigated stakeholder perceptions of the drivers and outcomes of stream connectivity, and (2) evaluated the effects of stakeholder-identified connectivity and nonnative species scenarios on Yellowstone cutthroat trout (YCT) populations. Our study was conducted in the Teton River, Idaho, USA. We integrated two modeling approaches, mental modeling and individual-based ecological modeling, to explore social-ecological outcomes for stakeholders and YCT populations. Aggregation of mental models revealed an emergent pattern of increasing complexity as more types of stakeholders were considered, as well as gaps and linkages among different stakeholder knowledge areas. These results highlight the importance of knowledge sharing among stakeholders when making decisions about connectivity. Additionally, the results from the individual-based models suggested that the potential for a large, migratory life history form of YCT, in addition to self-preference mating where they overlap with rainbow trout, had the strongest effects on outcomes for YCT. Exploring social and ecological drivers and outcomes to changing connectivity is useful for anticipating and adapting to unintended outcomes, as well as making decisions for desirable outcomes. The results from this study can contribute to the management dialogue surrounding stream connectivity in the Teton River, as well as to our understanding of connectivity conservation and its outcomes more broadly.

Timing of reproduction underlies fitness tradeoffs for a salmonid fish

Life history diversity is generated and maintained in part by density‐dependent fitness tradeoffs that inhibit a single trait value from reaching fixation. While central to our understanding of evolution, demonstrating density dependence in the strength of fitness tradeoffs is difficult in natural systems. The timing of reproduction is a key life history trait that determines access to breeding habitat and exposure of offspring to competitive interactions and environmental conditions. Understanding the processes underlying diversity in reproductive timing will aid efforts to increase adaptive capacity under global environmental change. Here, we used detailed field studies, genetic parentage assignment, and simulation modeling to evaluate the fitness tradeoffs associated with the timing of reproduction for Yellowstone cutthroat trout Oncorhynchus clarkii bouvieri in groundwater‐dominated tributaries to the upper Snake River, Wyoming, USA. We conducted our study across two years to understand how the strength of tradeoffs changes with population density. We found that early breeders experienced reduced reproductive success relative to later breeders due to the negative impact of nest superimposition (where later breeders construct nests overlapping those constructed previously) on embryo survival. However, as the risk of superimposition declined in the low‐density year and early breeders experienced fewer losses, reproductive success became more similar among individuals breeding at different times. Further, in the spring following the critical period for growth and survival, offspring of early breeders had experienced longer growing seasons, attained larger body sizes, and were equally abundant relative to those of later breeders, suggesting that fitness losses due to superimposition may be offset by size‐dependent competitive ability and overwinter survival. Our results illustrate a mechanism underlying diversity in the timing of reproduction for salmonids. This type of life history diversity will help to ensure the resilience and stability of salmonid populations attempting to adapt to changing local stressors associated with global climate change.

Efficacy of one‐time rotenone application for Westslope Cutthroat Trout restoration in Boulder Creek, Montana

AbstractObjectiveAlthough piscicides are an important tool for native fish management, our understanding of native fish population dynamics posttreatment (i.e., in putatively vacant habitat) is limited.MethodsHere, we describe long‐term trends in size and abundance of Cutthroat Trout Oncorhynchus clarkii in Lower Boulder Lake and Boulder Creek (Montana).ResultNo significant differences were found before and after treatment with rotenone in mean length and population density in Boulder Creek. Posttreatment genetic samples from Boulder Lake and upper Boulder Creek consisted entirely of the Westslope Cutthroat Trout Oncorhynchus clarkii lewisi used to refound the population. Middle and lower Boulder Creek genetic samples contained 99.4% and 98.4% Westslope Cutthroat Trout, indicating that some nonnative (Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri hybrid) fish survived the treatment. Population demographics showed robust recovery posttreatment; however, genetic results revealed the limitations of a one‐time treatment—that is, an incomplete fish kill.ConclusionWe demonstrate that Cutthroat Trout populations achieve recovery after rotenone treatment in the long term, but one‐time rotenone treatments on large drainages often fail to totally eradicate populations. Therefore, managers should plan on multiple treatments and utilize environmental DNA to help achieve total removal of target species.

Decomposition Rates of Suppression-Produced Fish Carcasses in a Large, Deep, High-Elevation Lake in North America

The decomposition of vertebrates in lake ecosystems has been largely understudied despite being a vital part of ecosystem processes. Invasive lake trout (Salvelinus namaycush) invaded Yellowstone Lake and caused a decline in the native Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) population. To restore Yellowstone cutthroat trout, lake trout were suppressed by gillnetting annually since 1995 and has continued to present, with most carcasses deposited in the profundal zone (>70 m). As a part of suppression management, a fraction of carcasses from gillnetting were ground and placed on littoral spawning sites (causing lake trout embryo mortality via hypoxia). We conducted experiments (2018 and 2019) to determine how carcass state (i.e., whole vs. ground) and location of deposition (i.e., profundal or littoral) affected decomposition rates. Whole carcasses in the depths of Yellowstone Lake decomposed nine times slower (rate of decay, k = −0.0075 day−1; 95% CI = −0.0063–−0.0089) than ground carcasses in the littoral zone (k = −0.0679 day−1; 95% CI = −0.0590–−0.0768). Whole carcasses had a half-life of 91 days while ground carcasses had a half-life of 10 days. We showed that carcass state and location cause a differential decomposition for lake trout carcasses in Yellowstone Lake. Understanding carcass persistence in lakes can inform the management of suppression-produced carcasses in large lakes and provide insight into potential effects of carcass deposition from other sources, such as spawning events or fish kills, on nutrient cycling.

Current and historical patterns of recruitment of Yellowstone cutthroat trout in Yellowstone Lake, Wyoming, as revealed by otolith microchemistry

Yellowstone cutthroat trout inhabiting Yellowstone Lake have declined substantially over the past 25 years as a result of predation by invasive lake trout, the presence of whirling disease, and periods of persistent drought. We used otolith microchemistry to assess whether cutthroat trout recruitment patterns have changed in response to these environmental stressors. Though water chemistry variation among the 22 sampled spawning tributaries was low, we identified 9 distinct spawning stream clusters. Random forest models were developed for assessing relative recruitment, yielding a high classification accuracy of 84.4% for known-origin cutthroat trout fry otoliths and 79.0% for simulated otolith signatures based on water chemistry. Proportion of recruitment varied significantly between pre- and post-stressor samples (X2 = 15.40, P = 0.03). The majority of pre- (0.84) and post-stressor (0.77) recruitment occurred in the same three stream clusters, but there was a notable decrease in recruitment in streams with high whirling disease prevalence, and a notable increase from the tributary cluster without whirling disease and with low lake trout predation risk. Conservation efforts should be focused on protecting important spawning tributaries and improving cutthroat trout recruitment in spawning streams that in the past likely contributed much greater numbers of fish.

Aerial Application of Organic Pellets Eliminates Lake Trout Recruitment from a Primary Spawning Reef in Yellowstone Lake

AbstractInvasive Lake Trout Salvelinus namaycush in the Yellowstone Lake ecosystem have been gillnetted since 1995 to suppress the population and allow for recovery of native Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri. Although gillnetting is effective (Lake Trout population growth rate λ ≤ 0.6 during 2012–2022), the effort only targets free‐swimming, age‐2 and older Lake Trout. We developed a complementary suppression method using organic (soy and wheat) pellets to cause Lake Trout embryo mortality and reduce recruitment from spawning areas. The entire Carrington Island spawning reef (0.5 ha) was aerially treated with 3.56 and 3.00 kg/m2 of pellets in 2019 and 2020, respectively. Pellet decomposition caused dissolved oxygen concentrations to decline to lethal levels at 20 cm depth in the substrate, and pellets mostly dissipated from the reef within 12 d. Lake Trout fry trap CPUE was reduced to zero after ice‐off each spring after the treatments. Prior to the treatments, 71 fry were captured during 58 trap‐nights of effort in 2017–2019. After the treatments, no fry were captured during 273 trap‐nights in 2020 and 2021. Lake Trout CPUE in large‐mesh gill nets set near Carrington Island in September did not decline during 2017–2021 and fry were again trapped on the reef in spring 2022, suggesting that adults were not deterred from spawning there in the years after the pellet treatments. Complementary methods that increase mortality of prerecruits may allow for a reduction in gill‐netting effort and the long‐term costs of maintaining Lake Trout population suppression in Yellowstone Lake. Treatment of spawning areas may improve suppression efficiency for Lake Trout and invasive fish populations elsewhere because entire cohorts are targeted while immobile and temporarily concentrated in relatively small areas.

Invasive predator diet plasticity has implications for native fish conservation and invasive species suppression.

Diet plasticity is a common behavior exhibited by piscivores to sustain predator biomass when preferred prey biomass is reduced. Invasive piscivore diet plasticity could complicate suppression success; thus, understanding invasive predator consumption is insightful to meeting conservation targets. Here, we determine if diet plasticity exists in an invasive apex piscivore and whether plasticity could influence native species recovery benchmarks and invasive species suppression goals. We compared diet and stable isotope signatures of invasive lake trout and native Yellowstone cutthroat trout (cutthroat trout) from Yellowstone Lake, Wyoming, U.S.A. as a function of no, low-, moderate-, and high-lake trout density states. Lake trout exhibited plasticity in relation to their density; consumption of cutthroat trout decreased 5-fold (diet proportion from 0.89 to 0.18) from low- to high-density state. During the high-density state, lake trout switched to amphipods, which were also consumed by cutthroat trout, resulting in high diet overlap (Schoener's index value, D = 0.68) between the species. As suppression reduced lake trout densities (moderate-density state), more cutthroat trout were consumed (proportion of cutthroat trout = 0.42), and diet overlap was released between the species (D = 0.30). A shift in lake trout δ13C signatures from the high- to the moderate-density state also corroborated increased consumption of cutthroat trout and lake trout diet plasticity. Observed declines in lake trout are not commensurate with expected cutthroat trout recovery due to lake trout diet plasticity. The abundance of the native species in need of conservation may take longer to recover due to the diet plasticity of the invasive species. The changes observed in diet, diet overlap, and isotopes associated with predator suppression provides more insight into conservation and suppression dynamics than using predator and prey biomass alone. By understanding these dynamics, we can better prepare conservation programs for potential feedbacks caused by invasive species suppression.

Redd superimposition mediates the accuracy, precision, and significance of redd counts for cutthroat trout

Redd counts are commonly applied to estimate spawning population size for salmonids and allow for broad spatial and temporal coverage in monitoring efforts. However, the utility of redd counts may be compromised by observation error, particularly with respect to superimposition, where later arriving spawners construct redds overlapping existing redds. Here, we provide a mechanistic evaluation of the effects of superimposition on the error structure and biological significance of redd count data for Yellowstone cutthroat trout ( Oncorhynchus clarkii bouvieri) spawning within tributaries to the Snake River, Wyoming. We used a Bayesian framework to parse observation error into distinct components and found low detection of redd clusters (i.e., areas of superimposition) was offset by overestimates of the number of redds per cluster, such that observed counts accurately reflected census redd abundance. However, a saturating relationship between redd counts and spawner abundance indicated that counts is best interpreted as effective reproductive effort rather than spawner abundance. Our results provide a mechanistic understanding of redd count data that can be used to assess their application and interpretation for monitoring.

Physical Habitat Complexity Partially Offsets the Negative Effect of Brook Trout on Yellowstone Cutthroat Trout in the Peripheral Goose Creek Subbasin

La presencia de trucha de arroyo no nativa Salvelinus fontinalis suele reducir la persistencia a largo plazo de las poblaciones autóctonas de trucha degollada Oncorhynchus clarkii en el oeste de EE.UU. Sin embargo, hay casos en los que las dos especies han coexistido durante décadas, y se ha sugerido que condiciones saludables y diversas del hábitat de los arroyos facilitan la simpatría. Nuestro objetivo fue evaluar cómo la diversidad del hábitat puede influir en las interacciones negativas entre la trucha de arroyo y la trucha degollada de Yellowstone O. c. bouvieri en la subcuenca de Goose Creek, en el oeste de EE.UU. Determinamos que ninguna de las dos especies fue abundante cuando se encontró en simpatría. La trucha degollada de Yellowstone se encontró en ocho de los 41 sitios muestreados, y fue simpátrica con la trucha de arroyo en cuatro sitios. La regresión por cuantiles mostró que la trucha de arroyo representó un factor limitante para la densidad de truchas degolladas de Yellowstone de edad uno o mayores (peces/100 m2). Una reducida variación en la profundidad del agua reflejó malas condiciones físicas del hábitat, factor que también pareció ser limitante. Las truchas de edad cero se encontraron en peor condición corporal en presencia de la trucha de arroyo. La regresión lineal múltiple mostró que las truchas de arroyo de todos los tamaños tuvieron un efecto negativo, mientras que, la diversidad de elementos de cobertura tuvo un efecto positivo, pero menor, sobre la condición corporal de la trucha degollada de edad cero. La trucha de arroyo pareció influir negativamente en etapas tempranas de la vida de la trucha degollada de Yellowstone en la subcuenca de Goose Creek, de manera similar a los impactos negativos observados en otros sitios. Sin embargo, nuestros datos también sugirieron que la complejidad del hábitat puede compensar parcialmente esta interacción negativa en cierto nivel, al proveer mayor espacio de nicho disponible, añadiendo así capacidad de hábitat. En caso de que investigaciones futuras mostraran que este patrón se observa más ampliamente, entonces la protección y la restauración de la complejidad y la diversidad del hábitat pueden desempeñar un papel importante en la mediación de los impactos negativos de la trucha de arroyo sobre la trucha degollada, y potencialmente facilitar la simpatría donde la erradicación de la trucha de arroyo no es factible.

Arsenic and Mercury Distribution in an Aquatic Food Chain: Importance of Femtoplankton and Picoplankton Filtration Fractions.

Arsenic (As) and mercury (Hg) were examined in the Yellowstone Lake food chain, focusing on two lake locations separated by approximately 20 km and differing in lake floor hydrothermal vent activity. Sampling spanned from femtoplankton to the main fish species, Yellowstone cutthroat trout and the apex predator lake trout. Mercury bioaccumulated in muscle and liver of both trout species, biomagnifying with age, whereas As decreased in older fish, which indicates differential exposure routes for these metal(loid)s. Mercury and As concentrations were higher in all food chain filter fractions (0.1-, 0.8-, and 3.0-μm filters) at the vent-associated Inflated Plain site, illustrating the impact of localized hydrothermal inputs. Femtoplankton and picoplankton size biomass (0.1- and 0.8-μm filters) accounted for 30%-70% of total Hg or As at both locations. By contrast, only approximately 4% of As and <1% of Hg were found in the 0.1-μm filtrate, indicating that comparatively little As or Hg actually exists as an ionic form or intercalated with humic compounds, a frequent assumption in freshwaters and marine waters. Ribosomal RNA (18S) gene sequencing of DNA derived from the 0.1-, 0.8-, and 3.0-μm filters showed significant eukaryote biomass in these fractions, providing a novel view of the femtoplankton and picoplankton size biomass, which assists in explaining why these fractions may contain such significant Hg and As. These results infer that femtoplankton and picoplankton metal(loid) loads represent aquatic food chain entry points that need to be accounted for and that are important for better understanding Hg and As biochemistry in aquatic systems. Environ Toxicol Chem 2023;42:225-241. © 2022 SETAC.

Hybridization decreases native cutthroat trout reproductive fitness.

Examining natural selection in wild populations is challenging, but crucial to understanding many ecological and evolutionary processes. Additionally, in hybridizing populations, natural selection may be an important determinant of the eventual outcome of hybridization. We characterized several components of relative fitness in hybridizing populations of Yellowstone cutthroat trout and rainbow trout in an effort to better understand the prolonged persistence of both parental species despite predictions of extirpation. Thousands of genomic loci enabled precise quantification of hybrid status in adult and subsequent juvenile generations; a subset of those data also identified parent-offspring relationships. We used linear models and simulations to assess the effects of ancestry on reproductive output and mate choice decisions. We found a relatively low number of late-stage (F3+) hybrids and an excess of F2 juveniles relative to the adult generation in one location, which suggests the presence of hybrid breakdown decreasing the fitness of F2+ hybrids later in life. Assessments of reproductive output showed that Yellowstone cutthroat trout are more likely to successfully reproduce and produce slightly more offspring than their rainbow trout and hybrid counterparts. Mate choice appeared to be largely random, though we did find statistical support for slight female preference for males of similar ancestry. Together, these results show that native Yellowstone cutthroat trout are able to outperform rainbow trout in terms of reproduction and suggest that management action to exclude rainbow trout from spawning locations may bolster the now-rare Yellowstone cutthroat trout.

Comparison of Structures Used to Estimate Age and Growth of Yellowstone Cutthroat Trout

Abstract Understanding age and growth of fishes is critical for making meaningful management decisions. Obtaining useful information is dependent on using the best structure (e.g., scale, otolith). The objective of this study was to evaluate precision and reader confidence in age estimates from sagittal otoliths (i.e., whole, sectioned) and scales for Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri collected from Henrys Lake, Idaho. We also sought to compare growth estimates among structures sampled during annual gill net surveys in May 2019 and 2020. We removed sagittal otoliths and scales from 416 Yellowstone Cutthroat Trout. Two readers without prior knowledge of fish length independently aged scales, whole otoliths, and sectioned otoliths. Each reader also provided a confidence rating of 0 (not confident) to 3 (completely confident). Percent exact agreement between readers was highest for sectioned otoliths (85.3%), followed by scales (68.5%) and whole otoliths (66.1%). Average confidence rating was highest for sectioned (mean ± SD = 2.2 ± 0.6) and whole (1.4 ± 0.5) otoliths and lowest for scales (1.0 ± 0.2). Among structures, percent exact agreement (i.e., consensus age) was highest between whole and sectioned otoliths (66.7%), followed by scales and sectioned otoliths (58.9%). Exact agreement was lowest between scales and whole otoliths (51.2%). Differences in back-calculated length at age estimates between sectioned otoliths and scales were minimal, particularly for ages 1–4. Although sectioned otoliths required more time to prepare than scales or whole otoliths, sectioned otoliths produced the most precise age estimates for Yellowstone Cutthroat Trout, with the highest reader confidence.

Temporal segregation in spawning between native Yellowstone cutthroat trout and introduced rainbow trout

AbstractHybridisation with introduced taxa poses a threat to native fish populations. Mechanisms of reproductive isolation can limit or prevent hybridisation between closely related species. Understanding how these mechanisms interact between the same species across geographically distinct occurrences of secondary contact, and how regional factors influence them, can inform our understanding of hybridisation as a threat and management actions to mitigate this threat. We used data collected on adult fish migration timing and approximate emergence timing of subsequent juvenile fish paired with genomic data to assess whether temporal isolation in the timing of spawning exists between Yellowstone cutthroat trout, rainbow trout and hybrids in the North Fork Shoshone River drainage in northwest Wyoming. We found evidence that Yellowstone cutthroat trout spawn, on average, two to four weeks later than rainbow trout and hybrids and two environmental covariates related to water temperature and discharge were associated with differences in spawning migration timing. Despite statistical support for Yellowstone cutthroat trout spawning later, disproportionately high numbers of rainbow trout and hybrids, paired with extended spawning seasons, lead to substantial overlap between all genotypes. Our results provide further evidence of temporal segregation in the timing of spawning as a mechanism of reproductive isolation between closely related species, but substantial spawning overlap suggests temporal segregation alone will not be enough to curtail hybridisation in conservation populations.

Spatial and Temporal Distribution and Habitat Selection of Native Yellowstone Cutthroat Trout and Nonnative Utah Chub

AbstractHenrys Lake, Idaho, is a renowned trophy trout fishery that faces an uncertain future following the establishment of Utah Chub (UTC) Gila atraria. Utah Chub were first documented in the lake in 1993 and have become abundant over the past two decades. Little is known about the ecology of UTC, but they typically have negative effects on salmonids in systems where they have been introduced. We sought to fill knowledge gaps in UTC ecology and provide insight on potential interactions with Yellowstone Cutthroat Trout (YCT) Oncorhynchus clarkii bouvieri. Ninety‐four YCT and 95 UTC were radio‐tagged in spring 2019 and 2020 to better understand potential interactions between YCT and UTC in Henrys Lake. Fish were located via mobile tracking and fixed receivers from June to December 2019 and 2020. In June of both years, YCT and UTC were concentrated in nearshore habitats. As water temperatures increased, UTC were documented in deeper water (mean ± SD = 3.6 ± 1.4 m) and YCT became more concentrated in areas with cold water (e.g., mouths of tributaries, in‐lake springs). In July and August, large congregations of UTC were observed. Yellowstone Cutthroat Trout were detected in tributaries from June to August, but no UTC were detected in the tributaries. By late fall (November–December), YCT were located along the shoreline and UTC were detected in the middle of the lake. Both YCT and UTC were observed in areas with dense vegetation. Macrophytes likely provided a food source for UTC and cover from predators for both species. Locations of YCT were negatively related to warm water temperatures, whereas UTC were positively associated with warm water temperatures. Results from this research fill knowledge gaps in UTC and YCT interactions as well as provide valuable insight on the ecology of UTC and adfluvial Cutthroat Trout populations. Furthermore, distribution patterns and habitat selectivity of YCT and UTC in Henrys Lake can be used to inform management decisions for fishery improvement and YCT conservation.