Summary This study presents data on inheritance of a darkened caudal peduncle (ebony) and yellow body coloration (yellow) in the gilthead sea bream (Sparus aurata). Fifteen progeny groups, obtained by crossing fish with three color phenotypes and of known origin, were analyzed. Analyzes of segregation in F1 progeny involving groups from parental crosses of wild-type colored × wild-type colored; ebony × ebony; yellow × yellow, showed that the parents produced the offspring only with the same phenotypes (true breeding). Crosses involving F1 wild-type colored parents (that resulted from crosses of wild-type parents with either ebony or yellow fish) showed in their F2 progeny groups of which their phenotypic segregations did not differ significantly from a 3 : 1 Mendelian ratio. The progeny of back-cross of ebony × (F1 wild-type colored × ebony) showed phenotypic segregations that did not differ significantly from the 1 : 1 Mendelian ratio. Overall, the results of the crossing experiments demonstrated that, similar to albinism described in a number of aquacultured species, ebony and yellow body coloration in S. aurata are both due to a single recessive allele. However, the yellow mutation of a gene controlling yellow pigment synthesis affects the yellow color of the whole fish body, whereas the ebony mutation causes production of melanin only in a specific area of the fish body, resulting in the development of a black coloration of the caudal peduncle. Experiments to assess culture performance showed that the color genes controlling ebony and yellow coloration had significant detrimental pleiotropic effects on growth, survival and body shape. Color mutations in the gilthead sea bream may be used as models for the study of: (i) genetic and physiological mechanisms of sterility, (ii) stress and disease resistance, (iii) effects of heterosis, (iv) genetic polymorphism in populations, and (v) methods of genetic protection in selected sea bream strains as well as in experiments on chromosome set manipulation.