Xylan Substrates Research Articles

Cloning and Characterization of the Xyn11A Gene from Lentinula edodes

Hemicellulose represents a rich source of biomass that can be converted into useful chemical feedstocks. One of the main components of hemicellulose is xylan, a polymer of xylose residues. Xylanase enzymes that hydrolyze xylan are therefore of great commercial interest. We have cloned a gene (xyn11A) that encodes a 283-amino acid xylanase enzyme from the fungus Lentinula edodes. The enzyme has a pI of 4.6 and belongs to the highly conserved glycosyl hydrolase family 11. The xylanase gene was cloned into a Pichia pastoris expression vector that secretes active enzyme into both solid and liquid media. The optimal reaction conditions were at pH 4.5 and 50 degrees C. The enzyme had a Km of 1.5 mg/ml and a Vmax of 2.1 mmol/min/mg. Xyn11A produced primarily xylobiose, xylotriose, and xylotetraose from a birchwood xylan substrate. This is the first report on the cloning of a hemicellulase gene from L. edodes.

Purification and characterization ofThermobifida fuscaxylanase 10B

Thermobifida fusca grows well on cellulose and xylan, and produces a number of cellulases and xylanases. The gene encoding a previously unstudied endoxylanase, xyl10B, was overexpressed in E. coli, and the protein was purified and characterized. Mature Xyl10B is a 43-kDa glycohydrolase with a short basic domain at the C-terminus. It has moderate thermostability, maintaining 50% of its activity after incubation for 16 h at 62 degrees C, and is most active between pH 5 and 8. Xyl10B is produced by growth of T. fusca on xylan or Solka Floc but not on pure cellulose. Mass spectroscopic analysis showed that Xyl10B produces xylobiose as the major product from birchwood and oat spelts xylan and that its hydrolysis products differ from those of T. fusca Xyl11A. Xyl10B hydrolyzes various p-nitrophenyl-sugars, including p-nitrophenyl alpha-D-arabinofuranoside, p-nitrophenyl-beta-D-xylobioside, p-nitrophenyl-beta-D-xyloside, and p-nitrophenyl-beta-D-cellobioside. Xyl11A has higher activity on xylan substrates, but Xyl10B produced more reducing sugars from corn fiber than did Xyl11A.

Production of lignocellulolytic enzymes by Trametes gallica and detection of polysaccharide hydrolase and laccase activities in polyacrylamide gels.

White rot fungus Trametes gallica was studied for the production of lignocellulolytic enzymes: cellulase, xylanase, laccase, manganese-dependent peroxidase (MnP), and lignin peroxidase (LiP). The results demonstrated that low-nitrogen (2.2 mM N) and surface stationary cultivation favored production of extracellular MnP. MnP activity reached 118.1 UL(-1) while T. gallica was grown in a low-nitrogen culture containing phenylalanine. However, laccase levels observed in high-nitrogen (22 mM N) agitated cultures were much greater than those seen in low-nitrogen. The N source experiments seemed to reveal that NH4+ plays an important role in inducing MnP and laccase of the fungus. Results showed that T. gallica produces a series of the lignocellulolytic enzymes, and needs high N to produce all the enzymes during solid-state fermentation of wheat straw. This paper also presents a modified zymogram procedure to detect xylanase and laccase of T. gallica in polyacrylamide gel. Xylanase in crude enzyme of T. gallica was displayed by contacting protein gel strips with xylan substrate gels and by staining with iodine. By immersing the protein gel strips in o-tolidine solution, the blue-green zones representing laccase activity were visualized against a colorless background.

Effect of vanillin on the production of wood-decomposing enzymes from a wood-rotting fungus, Coriolus versicolor

To examine the effect of vanillin on the production of the wood-decomposing enzymes of a wood-rotting fungus, vanillin was added as a model of lignin-related phenols to Coriolus versicolor cultures containing cellulosic and xylan substrates. Among five conditions tested, cellobiose alone was the most effective inducer of cellulolytic and xylanolytic enzymes. Addition of vanillin enhanced the effect of cellobiose on enzyme production. However, vanillin did not act as greatly in other cultures, except for cellobiose. Analytical isoelectric focusing and active staining of endo-β-1,4-glucanase demonstrated that isozyme patterns in the presence of vanillin were the same as those in absence of vanillin, indicating that vanillin does not induce novel isozymes but rather enhances enzyme production. On the other hand, vanillin, which enhanced production of phenoloxidizing enzymes, was not always determined in all cultures, suggesting that the action of vanillin depends on the kinds of carbohydrates. Therefore, the effect of a monolignol vanillin on enzyme production was associated with coexistent carbohydrates.

Purification and properties of an extracellular β-xylosidase from a newly isolated Fusarium proliferatum

An extracellular β-xylosidase from a newly isolated Fusarium proliferatum (NRRL 26517) capable of utilizing corn fiber xylan as growth substrate was purified to homogeneity from the culture supernatant by DEAE-Sepharose CL-6B batch adsorption chromatography, CM Bio-Gel A column chromatography, Bio-Gel A-0.5 m gel filtration and Bio-Gel HTP Hydroxyapatite column chromatography. The purified β-xylosidase (specific activity, 53 U/mg protein) had a molecular weight of 91,200 as estimated by SDS–PAGE. The optimum temperature and pH for the action of the enzyme were 60 °C and 4.5, respectively. The purified enzyme hydrolyzed xylobiose and higher xylooligosaccharides but was inactive against xylan substrates. It had a K m value of 0.77 mM ( p-nitrophenol-β- d-xyloside, pH 4.5, 50 °C) and was competitively inhibited by xylose with a K i value of 5 mM. The enzyme did not require any metal ion for activity and stability. Comparative properties of this enzyme with other fungal β-xylosidases are presented.

Production, purification and properties of xylanase from a newly isolated Fusarium proliferatum

Fusarium proliferatum (NRRL 26517), was isolated by screening soil samples surrounding decaying corn and wood using corn fibre xylan as carbon source. The extracellular xylanase from this fungal strain was purified 975-fold to homogeneity from the culture supernatant by ammonium sulphate treatment, DEAE Bio-Gel A column chromatography, octyl-Sepharose column chromatography and Bio-gel A-0.5 m gel filtration. The purified xylanase (specific activity 591 U mg −1 protein) was a monomeric glycoprotein with a molecular weight (MW) of 22 400 as determined by SDS-PAGE. The optimum pH and temperature for the action of the enzyme were at 5.0–5.5 and 55 °C, respectively. The purified xylanase was fully stable at pH 5.0–7.5 and temperature up to 55 °C. It hydrolyzed a variety of xylan substrates mainly to xylobiose and higher short-chain xylooligosaccharides. No xylose was formed. The enzyme did not require metal ions for activity and stability.

Construction of a chimeric xylanase using multidomain enzymes from Neocallimastix frontalis

A fusion was constructed between xyn3A and xyn4B genes, each encoding a catalytic domain of XYN 3 and XYN4 bifunctional endoxylanases of Neocallimastix frontalis. The XYN3A4 chimeric enzyme, as XYN3, XYN3A and XYN4 recombinant xylanases, were expressed in the Escherichia coli host system with a C-term (His) 6 -tag. Overexpression was closely examined to enhance the solubility of recombinant enzymes. Best conditions determined by optimization experiments were found as growth and induction temperature of 37°C, with the addition of 1 M sorbitol and 2.5 mM glycyl-betaine to the culture medium. Enzymes were purified to homogeneity by chromatography on SP-sepharose, Cu-IDA and TSK-gel consecutively, and SDS-PAGE analysis of pure enzyme fractions gave molecular masses of 62, 32, 20 and 59 kDa respectively for XYN3, XYN3A, XYN4 and XYN3A4. These values were in agreement with those obtained by the exclusion chromatography. Despite the fact that XYN3A4 showed the same values of temperature (50°C) and pH (7) for maximum activity than XYN3 and XYN3A, the chimeric enzyme XYN3A4 exhibited an improved affinity with a better rate of hydrolysis toward the xylan substrate. However, regarding to the enzyme stability, XYN3A4 (t 0.5 = 52 min) was almost twice less stable than XYN3 (t 0.5 = 90 min) at the operating temperature of 50°C. Another difference was observed with the activation energy values which were estimated in the temperature interval 20–50°C and were shown to be approximately 100, 70 and 50 kJ.mole −1 for XYN3, XYN3A and XYN3A4 respectively.

Xylanase from a newly isolated Fusarium verticillioides capable of utilizing corn fiber xylan.

A fungus, Fusarium verticillioides (NRRL 26518), was isolated by screening soil samples using corn fiber xylan as carbon source. The extracellular xylanase from this fungal strain was purified to apparent homogeneity from the culture supernatant by ultrafiltration using a 30,000 cut-off membrane, octyl-Sepharose chromatography and Bio gel A-0.5 m gel filtration. The purified xylanase (specific activity 492 U/mg protein; MW 24,000; pI 8.6) displayed an optimum temperature at 50 degrees C and optimum pH at 5.5, a pH stability range from 4.0 to 9.5 and thermal stability up to 50 degrees C. It hydrolyzed a variety of xylan substrates mainly to xylobiose and higher short-chain xylooligosaccharides. No xylose was formed. The enzyme did not require metal ions for activity and stability.

Functional Characterization of a Novel Xylanase from a Corn Strain of Erwinia chrysanthemi

A beta-1,4-xylan hydrolase (xylanase A) produced by Erwinia chrysanthemi D1 isolated from corn was analyzed with respect to its secondary structure and enzymatic function. The pH and temperature optima for the enzyme were found to be pH 6.0 and 35 degrees C, with a secondary structure under those conditions that consists of approximately 10 to 15% alpha-helices. The enzyme was still active at temperatures higher than 40 degrees C and at pHs of up to 9.0. The loss of enzymatic activity at temperatures above 45 degrees C was accompanied by significant loss of secondary structure. The enzyme was most active on xylan substrates with low ratios of xylose to 4-O-methyl-D-glucuronic acid and appears to require two 4-O-methyl-D-glucuronic acid residues for substrate recognition and/or cleavage of a beta-1,4-xylosidic bond. The enzyme hydrolyzed sweetgum xylan, generating products with a 4-O-methyl-glucuronic acid-substituted xylose residue one position from the nonreducing terminus of the oligoxyloside product. No internal cleavages of the xylan backbone between substituted xylose residues were observed, giving the enzyme a unique mode of action in the hydrolysis compared to all other xylanases that have been described. Given the size of the oligoxyloside products generated by the enzyme during depolymerization of xylan substrates, the function of the enzyme may be to render substrate available for other depolymerizing enzymes instead of producing oligoxylosides for cellular metabolism and may serve to produce elicitors during the initiation of the infectious process.

Production and properties of hemicellulases by a Thermomyces lanuginosus strain.

Thermophilic fungi producing extremely high beta-xylanase and their associated hemicellulases have attracted considerable attention because of potential industrial applications. Thermomyces lanuginosus strain SSBP isolated from soil, produced beta-xylanase activity of 59 600 nkat ml-1 when cultivated on a medium containing corn cobs as substrate and yeast extract as nitrogen source. Lower beta-xylanase activities were produced after growth on other xylan substrates, sugars and soluble starch. Other hemicellulases were produced extracellularly at significantly lower levels than the beta-xylanase activity produced on corn cobs. No cellulase activity was observed. The optimal conditions for beta-xylanase production were 50 degrees C and pH 6.5, whereas 70 degrees C and between pH 5. 5 and 9.5 were optimal for beta-xylanase activity. The temperature optima for other hemicellulases were less than the xylanase with the exception of beta-mannosidase. The pH optima of the other hemicellulases were between 5.0 and 6.5. Xylanase was stable up to 70 degrees C and between pH 5.5 and 9.0 for 30 min whereas the other hemicellulase were less stable. These results suggest that the most suitable conditions for hydrolysis of hemicellulose by these enzymes would be at 50 degrees C and pH 6.0.

Sequencing and expression of additional xylanase genes from the hyperthermophile Thermotoga maritima FjSS3B.1.

Two genes, xynB and xynC, coding for xylanases were isolated from Thermotoga maritima FjSS3B.1 by a genomic-walking-PCR technique. Sequencing of the genes showed that they encode multidomain family 10 xylanases. Only XynB exhibited activity against xylan substrates. The temperature optimum (87 degrees C) and pH optimum (pH 6.5) of XynB are different from the previously reported xylanase, XynA (also a family 10 enzyme), from this organism. The catalytic domain expressed without other domains has a lower temperature optimum, is less thermostable, and has optimal activity at pH 6.5. Despite having a high level of sequence similarity to xynB, xynC appears to be nonfunctional since its encoded protein did not show significant activity on xylan substrates.

Purification, characterization and substrate specificities of xylanase isoenzymes from Melanocarpus albomyces IIS 68.

The ascomycetous fungus Melanocarpus albomyces when grown on wheat straw produced seven extracellular xylanase isoenzymes, designated as la, Ib, Ic, IIa, lib, llc, and lId. All seven xylanases were purified to homogeneity by gel filtration and ion-exchange chromatography. The molecular mass (kDa) of la, lb, Ic, Ila, lIb, lIc, and lId were estimated to be 22.9, 20.7, 18.6, 31.3, 25.4, 38.5, and 34.3, respectively by SDS-PAGE, and 23.7, 20.5, 17.1, 31.7, 25.1, 39.8, and 32.2, respectively by gel filtration. The isoelectric points of Ia, lb, Ic, Ila and IIb were found to be 6.2, 6.3, 6.4, 3.7, and 4.4, respectively. The activity of the isoenzymes was dependent on the type of the xylan substrates; Xylanases Ia, lb, and Ic showed highest specific activity toward larchwood xylan (an arabinoglucuronoxylan), IIa and Ilc toward birchwood xylan (a glucuronoxylan), and llb and IId toward beechwood xylan (a glucuronoxylan). Four isoenzymes la, lb, Ic, and Ila had an arabinose-releasing property on larchwood xylan. Application of specific isoenzymes as prebleaching agents in paper manufacture is proposed.

Purification and biochemical characteristics of beta-D-xylanase from a thermophilic fungus, Thermomyces lanuginosus-SSBP.

An extracellular xylanase was purified to homogeneity from the culture filtrate of a thermophilic fungus, Thermomyces lanuginosus-SSBP, and its biochemical characteristics were studied. A yield of 70-80% was achieved through the procedures of 80%-satd. ammonium sulphate precipitation, DEAE-Sephadex A25 and quaternary aminoethyl (QAE)-Sephadex A25 column chromatography. The molecular mass of the purified xylanase was 23.6 kDa, as analysed by SDS/PAGE, with a pI value of 3.8. The molar absorption coefficient of the absorbance at 280 nm was 6.8x10(4) M(-1).cm(-1). The specific activity, calculated using the dinitrosalicylic acid (DNS) method, was 3500 units/mg. The enzyme reactions followed Michaelis-Menten kinetics with K app m and V(max) values of 3.26 mg/ml and 6300 units/ml per mg of protein respectively, as obtained from a Lineweaver-Burk plot. The xylanase contained no other enzyme activity (cellulase, beta-glucosidase, beta-mannosidase, alpha-arabinofuranosidase, or beta-xylosidase) except for the hydrolysis of xylan substrate. The optimal temperature of the enzyme assay was 70-75 degrees C. The enzyme retained full activity after a 60 degrees C incubation for 3 h. The optimal pH of xylanase activity was 6.5 and the enzyme appeared to be stable over a broad pH range (pH 5-12) under the assay conditions. The majority of the metal ions tested had no effect on the enzyme activity, with the exception of Pb(2+) (modest inhibitor) and Hg(2+) (strong inhibitor). The results showed that one or two tryptophan residues oxidized by N-bromosuccinamide per enzyme molecule was sufficient to inhibit the enzyme activity completely, thus indicating that the tryptophan residues play an important role in the catalytical processes of the enzyme reaction. Because of the outstanding properties of the purified xylanase from the SSBP strain, this xylanase has a potential use in biopulping processes and other industrial applications.

Substrate hydrolysis by combinations of Trichoderma xylanases

The hydrolysis of five xylan substrates was examined using combinations of two pairs of xylanases from two species of Trichoderma. Antisynergy was observed in acetylated xylan isolated from aspen when the maximum hydrolysis achieved by certain xylanase combinations was significantly lower than that achieved by the most effective enzyme in the combination. Cooperative interactions among xylanases were observed in pine holocellulose where xylanase combinations were more effective than single xylanases.

Process development and simulation of glucose isomerase production from birchwood xylan by a Streptomycetes fusant

A process for glucose isomerase production from an unutilized substrate, xylan, was investigated, employing strain development, investigation of the culture conditions, and an expedient simulation method. Streptomyces sp. strain D3 obtained through protoplast fusion between Streptomyces cyaneus 190-1 and Streptomyces greiseoruber 42-9 was able to produce a substantial amount of intracellular glucose isomerase from xylan. The induction of glucose isomerase synthesis by xylose was confirmed in shaken flask cultivation. In fermentor cultivation, an initial concentration of 8 g l −1 xylan yielded glucose isomerase, 1100 U l −1. Taking into account the experimental data, a simplified model for the simulation of glucose isomerase production from xylan substrate was constructed based on a statistical regression method. The data selection for the estimation of the specific rates in the regression model was carried out based on the culture time and statistical distance measurement, such as Euclidean, Mahalanobis and modified distances. The results of the simulation of the growth and enzyme production using the model were close to the experimental results, which indicates that the statistical method can be extended to estimate the time courses of process of glucose isomerase production from xylan reasonably well.

Hydrolysis of xylan by Aspergillus niger immobilized on non-woven fabrics.

Aspergillus niger, which produces xylan-degrading enzymes, was immobilized on non-woven fabrics. The maximum xylan hydrolysis activity (15 U/cm3-support) and the highest stability were obtained when the fungus was immobilized on non-woven fabric made of silk. The enzymatic properties of the immobilized preparation were similar to those of the free enzyme. Ten times repeated batch hydrolysis of birch-wood xylan was done over a period of 450 h. Hydrolysis of different xylan substrates such as oat spelts and rice bran by the immobilized mycelia was also investigated.

Enzymatic accessibility of xylans in lignocellulosic materials

The hydrolysis of fibre-bound and isolated xylans from both birch and pine wood and kraft pulps was studied using purified xylanolytic enzymes of Trichoderma reesei. Despite high enzyme loading, the degree of hydrolysis of fibre-bound substrates did not exceed 20% of the theoretical value, apparently due to limited accessibility of the substrates. The fibre-bound xylans were as equally accessible in softwood as in hardwood pulps. The isolated xylans of wood and kraft pulps could be solubilized more extensively, with a hydrolysis yield of 50–65%. The substitution degree of the isolated xylan substrates was reflected in the different hydrolysis yields obtained by the two xylanases, with isoelectric point (pI) values of 9.0 and 5.5. On the more substituted substrates, i.e. pine kraft xylan and pine wood xylan, the two enzymes acted almost similarly, whereas on the less substituted xylan substrates, such as isolated birch kraft xylan, the pI-9.0 enzyme was more efficient. The side-group-cleaving enzymes increased only moderately the solubilization of the substrates.

Hydrolytic properties of two cellulases of Trichoderma reesei expressed in yeast.

Two cellulases of the filamentous fungus Trichoderma reesei, cellobiohydrolase II (CBHII, EC 3.2.1.91) and endoglucanase I (EGI, EC 3.2.1.4), produced in recombinant strains of the yeast Saccharomyces cerevisiae, were tested in the hydrolysis of cellulose, xylan and other polymeric substrates. Both enzymes were active against unsubstituted, insoluble cellulose. CBHII had greater activity than EGI against crystalline cellulose, whereas in the case of amorphous substrate the order was reversed. Evidence for synergism was obtained when mixtures of the two enzymes were used with a constant total protein dosage. The EGI was also active against soluble substituted cellulose derivatives, whereas the activity of CBHII against these substrates was insignificant. Both enzymes were active against barley (1-->3,1-->4)-beta-glucan, but were inactive against (1-->3,1-->6)-beta-glucan (laminarin). An apparent low mannan-degrading activity of EGI against locust-bean (Ceratonia siliqua) gum galactomannan was not confirmed when homopolymeric mannan was used as substrate in a prolonged hydrolysis test. EGI exhibited considerably greater activity against insoluble, unsubstituted hardwood xylan than against amorphous cellulose. Soluble 4-O-methyl-glucuronoxylan was also attacked by EGI, although to a somewhat lesser extent than the unsubstituted xylan. By comparison with two purified xylanases of T. reesei, EGI produced xylo-oligosaccharides with a longer mean chain length when acting on both substituted and unsubstituted xylan substrates. CBHII was inactive against xylan.

α-Glucuronidase and Other Hemicellulase Activities of Fibrobacter succinogenes S85 Grown on Crystalline Cellulose or Ball-Milled Barley Straw

Fibrobacter succinogenes produces an alpha-glucuronidase which cleaves 4-O-methyl-alpha-d-glucuronic acid from birch wood 4-O-methyl-alpha-d-glucuronoxylan. Very low levels of alpha-glucuronidase activity were detected in extracellular enzyme preparations of F. succinogenes on birch wood xylan substrate. The release of 4-O-methyl-alpha-d-glucuronic acid was enhanced when the birch wood xylan substrate was predigested by either a purified Schizophyllum commune xylanase or a cloned F. succinogenes S85 xylanase. These data suggest that the alpha-glucuronidase is unable to cleave 4-O-methyl-alpha-d-glucuronic acid from intact xylan but can act on unique low-molecular-weight glucuronoxylan fragments created by the cloned F. succinogenes xylanase. The cloned xylanase presumably must account for a small proportion of the indigenous xylanase activity of F. succinogenes cultures, since this xylanase source does not support high glucuronidase activity. The alpha-glucuronidase and associated hemicellulolytic enzymes exhibited higher activities in culture fluid from cells grown on ball-milled barley straw than in that of cellulose-grown cells. The profile of xylanases separated by isoelectric focusing (zymogram) of culture filtrate from cells grown on barley straw was more complex than that of culture filtrates from cells grown on cellulose. These data demonstrate that F. succinogenes produces an alpha-glucuronidase with an exacting substrate specificity which enables extensive cleavage of glucuronic acid residues from xylan as a consequence of synergistic xylanase action.

?-Xylanase produced by Aureobasidium pullulans CBS 58475

Aureobasidium pullulans CBS 58475 produced β-xylanase with an activity of 5 units/ml culture filtrate. Xylose, xylan and complex substrates containing xylose served as strong inducers. Purification of the enzyme was achieved by two sets of gel permeation chromatography. The enzyme has an pH optimum at 4.25 and a temperature optimum at 60°C. At slightly acid pH and temperatures up to 60°C β-xylanase showed good stability. The analysis of cleavage products classified the β-xylanase as an endoenzyme. Together with an endopolygalacturonase, the β-xylanase enhanced the maceration of carrots compared to endopolygalacturonase alone.