Event Abstract Back to Event Implication of allele determination of nuclear loci for phylogenetic analysis of polypoid Cobitis Kenji Saitoh1* 1 Tohoku National Fisheries Research Institute, Japan I present here how important information is hidden by phylogenetic comparison of nuclear DNAs sequenced directly with PCR in Cobitis loaches with frequent hybridization and polyploidy. Instead, many of the recent phylogenetic analyses in fish rely on mtDNA sequences because of sequencing efficiency and least risks of paralogous comparison. Maternal inheritance of mtDNAs, however, makes it unable to detect hybridization and polyploidy directly but hybridizing direction. Skewed mtDNA trees will also come out in such cases. Hence, needs for nuclear DNA comparison pushed to develop PCR primers for single copy nuclear genes. Many of PCR-based nuclear DNA sequencing for fish phylogeny nowadays employ direct sequencing results containing wobbled sequences at heterozygous sites. Direct sequencing of nuclear DNAs, however, sacrifices the merit of detecting hybrid-based events such as mitochondrial gene introgression, genome mosaicism, etc. I present an example from diploid-tetraploid complexes of Japanese loaches. Nuclear DNA sequencing with allele determination revealed parentage of tetraploids and unexpected genome mosaicism. Mitochondrial sequences determined their maternity. If we were doing only direct sequencing without determining nuclear alleles, those important information would be hidden in frippery good phylogenetic trees, and we thus might give misleading discussions. Keywords: Direct sequencing, genome mosaicism, hybridization, Introgression, mtDNA Conference: XVI European Congress of Ichthyology, Lausanne, Switzerland, 2 Sep - 6 Sep, 2019. Presentation Type: Oral Topic: EVOLUTION AND ECOLOGY OF FISH WITH ASEXUAL REPRODUCTION, HYBRID COMPLEXES AND POLYPLOIDY, WITH SPECIAL FOCUS ON LOACHES (COBITOIDEI) Citation: Saitoh K (2019). Implication of allele determination of nuclear loci for phylogenetic analysis of polypoid Cobitis. Front. Mar. Sci. Conference Abstract: XVI European Congress of Ichthyology. doi: 10.3389/conf.fmars.2019.07.00028 Copyright: The abstracts in this collection have not been subject to any Frontiers peer review or checks, and are not endorsed by Frontiers. They are made available through the Frontiers publishing platform as a service to conference organizers and presenters. The copyright in the individual abstracts is owned by the author of each abstract or his/her employer unless otherwise stated. Each abstract, as well as the collection of abstracts, are published under a Creative Commons CC-BY 4.0 (attribution) licence (https://creativecommons.org/licenses/by/4.0/) and may thus be reproduced, translated, adapted and be the subject of derivative works provided the authors and Frontiers are attributed. For Frontiers’ terms and conditions please see https://www.frontiersin.org/legal/terms-and-conditions. Received: 29 May 2019; Published Online: 14 Aug 2019. * Correspondence: Mx. Kenji Saitoh, Tohoku National Fisheries Research Institute, Shiogama, Japan, ksaitoh@affrc.go.jp Login Required This action requires you to be registered with Frontiers and logged in. To register or login click here. Abstract Info Abstract The Authors in Frontiers Kenji Saitoh Google Kenji Saitoh Google Scholar Kenji Saitoh PubMed Kenji Saitoh Related Article in Frontiers Google Scholar PubMed Abstract Close Back to top Javascript is disabled. Please enable Javascript in your browser settings in order to see all the content on this page.
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