X-ray Absorption Near-edge Structure Spectra Research Articles

Broccoli microgreens treated with CaCl2 solution absorb calcium atoms and accumulate them as Ca(II) hydrated ions

Broccoli microgreens treated with 10 mM CaCl2 aqueous solution were investigated to clarify whether they absorb calcium (Ca) atoms and what chemical states absorbed Ca species take. X-ray fluorescence (XRF) measurements using synchrotron radiation were performed to map Ca concentrations in cotyledon (seed leaf) of broccoli microgreens. The mapping pixel size was 20 μm × 20 μm. The broccoli microgreens treated with 10 mM CaCl2 aqueous solution show Ca concentrated areas in the cotyledon. On the other hand, no Ca concentrated areas were observed for the cotyledon of the other broccoli microgreens that were treated with purified water. The Ca chemical state of the Ca concentrated areas was studied by x-ray absorption near edge structure (XANES) spectra. The obtained XANES spectrum of the Ca concentrated area shows the characteristic features of CaCl2 aqueous solution, and it does not correspond to the XANES spectrum of CaCl2 powders.

Controlled Growth Interface of Charge Transfer Salts of Nickel-7,7,8,8-Tetracyanoquinodimethane on Surface of Graphdiyne

Controlled Growth Interface of Charge Transfer Salts of Nickel-7,7,8,8-Tetracyanoquinodimethane on Surface of Graphdiyne

Niobium speciation in minerals revealed byL2,3-edges XANES spectroscopy

AbstractThe systematic mineralogy of niobium (Nb) is complex, with more than one hundred species dominated by multicomponent oxides of similar chemistry. The determination of Nb speciation in solids (i.e., the distribution between the phases and the crystal-chemical environment of Nb) is thus a challenge in geological contexts. Here, we present the first Nb L2,3-edges X-ray absorption near-edge structure (XANES) measurements on various Nb minerals and synthetic oxides with geological relevance. The interpretation of Nb L2,3-edges XANES spectra in the light of crystal-field theory shows the sensitivity of spectra to local site symmetry and electronic environment around Nb atoms. Crystal-field multiplet simulations give estimates of the 10Dq crystal-field parameter values for Nb5+, which range from 2.8 to 3.9 eV depending on Nb coordination and Nb—O distances. Rather than a 10Dq vs. R–5 relationship (where R represents the average Nb-O bond distance) expected in a point-charge model, we find a R–3 dependence with the crystal-field splitting for reference materials with octahedrally coordinated Nb. Complementary ligand-field multiplet simulations provide evidence of charge transfer between Nb and O. The contribution of the ionic and covalent characters to the Nb-O bonds is equivalent, unlike more ionic 3d metal–O bonds. This systematic characterization of the L2,3-edges XANES spectral properties of Nb provides information on the mechanisms by which Nb5+ substitutes for Fe3+, Ti4+, or Ce4+ in oxides common in geological contexts. Whereas the substitution of Nb5+ for Ce4+ does not modify the local structure of the cation site in cerianite, the substitution of Nb5+ for Ti4+ in rutile and anatase results in an increase of the cation-ligand distance and a decrease in the symmetry of the cation site. Conversely, the substitution of Nb5+ for Fe3+ in hematite and goethite results in a smaller cation site distortion. Our study demonstrates the usefulness of L2,3-edges XANES spectroscopy to determine Nb speciation in minerals to understand the processes of enrichment of this critical metal.

Characterization of imperfections in scintillator crystals using gamma-ray induced positron annihilation lifetime spectroscopy

Gamma-ray-induced positron annihilation lifetime spectroscopy (GiPALS) was used to characterize pristine and codoped Lu3Al5O12 (LuAG) crystals grown using Czochralski (Cz) and micropulling-down (mPD) methods. GiPALS spectra were analyzed using a two-state trapping model. The bulk and defect lifetimes were theoretically calculated based on density functional theory (DFT) using the projector-augmented-wave (PAW) method. The experimentally measured and theoretically calculated bulk lifetimes almost agreed, thereby validating the experiment and simulation. The defect lifetimes almost coincided with positron annihilation lifetimes due to Al monovacancy at the 24d and 16a sites. Li+ and Mg2+ codoping weakened the vacancy-related component, indicating that codoping had effectively reduced the concentration of Al monovacancy. The Ce 5d–4f thermoluminescence (TL) glow curve revealed that Mg2+ codoping had annihilated the trapped electron centers. In contrast, Li+ codoping increased the concentration of interstitial Li+ ion associated trapped electron centers. Ce-L3 X-ray absorption near-edge structure (XANES) spectra demonstrated that Ce4+ ions at the 24c site had compensated for Mg2+ ion charges at the 24d and 16a site. The Ce4+ ions and oxygen vacancies were supposed to compensate for Li+ ion charges at the 24d and 16a sites.

Accurate, affordable, and generalizable machine learning simulations of transition metal x-ray absorption spectra using the XANESNET deep neural network.

The affordable, accurate, and generalizable prediction of spectroscopic observables plays a key role in the analysis of increasingly complex experiments. In this article, we develop and deploy a deep neural network-XANESNET-for predicting the lineshape of first-row transition metal K-edge x-ray absorption near-edge structure (XANES) spectra. XANESNET predicts the spectral intensities using only information about the local coordination geometry of the transition metal complexes encoded in a feature vector of weighted atom-centered symmetry functions. We address in detail the calibration of the feature vector for the particularities of the problem at hand, and we explore the individual feature importance to reveal the physical insight that XANESNET obtains at the Fe K-edge. XANESNET relies on only a few judiciously selected features-radial information on the first and second coordination shells suffices along with angular information sufficient to separate satisfactorily key coordination geometries. The feature importance is found to reflect the XANES spectral window under consideration and is consistent with the expected underlying physics. We subsequently apply XANESNET at nine first-row transition metal (Ti-Zn) K-edges. It can be optimized in as little as a minute, predicts instantaneously, and provides K-edge XANES spectra with an average accuracy of ∼±2%-4% in which the positions of prominent peaks are matched with a >90% hit rate to sub-eV (∼0.8eV) error.

High-Energy Resolution Fluorescence Detected X-ray Absorption Spectroscopy for the Speciation of Fe in Aerosol Samples

In this study, we compared the high-energy resolution X-ray fluorescence X-ray absorption near-edge structure (HERFD-XANES) and normal XANES spectra of various iron (Fe) species and Fe in atmospheric aerosol samples to explore the advantages of Fe K-edge HERFD-XANES for Fe speciation in aerosols using the linear combination fitting (LCF) of XANES spectra. We also conducted Fe extraction experiments to validate the LCF-XANES. In the HERFD-XANES spectra, the pre-edge region showed specific structures absent in normal XANES. HERFD-XANES also produced more distinctive shoulders within each spectrum than normal XANES. HERFD-XANES was applied to an aerosol sample (MT21-S2) collected in Tokyo, Japan. Normal XANES identified ferrihydrite, biotite, and montmorillonite, whereas HERFD-XANES clearly detected goethite as a fourth component. Normal XANES did not distinguish between ferrihydrite and goethite in LCF because of their similar structures. A similar trend was observed in the pre-edge region, and the Fe extraction experiment result was consistent with the LCF result in the pre-edge region. Thus, LCF of HERFD-XANES, in particular for the pre-edge region, can be a powerful tool for Fe speciation in aerosols.

Heavy metals concentrations and speciation of Pb and Ni in airborne particulate matter over two residential sites in Greater Cairo - reflection from synchrotron radiation.

Synchrotron radiation-based techniques [X-ray absorption near-edge structure (XANES) and X-ray fluorescence (XRF)] combined with inductively coupled plasma-mass spectrometry (ICP-MS) were used for the assessment of heavy metals concentrations as well as lead (Pb) and nickel (Ni) speciation in airborne particulate matter (PM10) over two residential sites in Greater Cairo. Nineteen 24 h high-volume samples collected at Giza (G) Square and Helwan (H) University (Egypt) were selected for this study. Mean concentrations of heavy metals in PM10 at both sites were found to have the same descending order of Pb > Cu > Ni > Cd > Co > As, of which concentrations of Pb, Cu, Ni and Cd in H samples were higher than those in G samples. For Pb, synchrotron-based XRF results were in good agreement with concentrations obtained by ICP-MS. The XANES spectra of PM10 at the Pb L2-edge and Ni K-edge were compared with those of Pb and Ni in model standard compounds to provide information on the potential oxidation states as well as the chemical forms of those elements. The data show that Pb has similar chemical environments in both series G and H with the predominance of Pb2+ oxidation state. Nickel was found as Ni(OH)2, NiO and Ni metal in the analyzed samples. However, the content of Ni in the background filter shows a very strong interference with that of the collected PM10. Carcinogenic and non-carcinogenic risks resulting from the inhalation of the studied heavy metals were assessed for children and adult residents and were found below the safe limits, at both sites.

Electron Paramagnetic Resonance and Synchrotron X-ray Absorption Spectroscopy for Highly Sensitive Characterization of Calcium Arsenates.

Calcium arsenates such as pharmacolite (CaHAsO4·2H2O), haidingerite (CaHAsO4·H2O), and weilite (CaHAsO4) are important sinks for arsenic in mine tailings as well as other natural and contaminated sites and are useful for reducing the mobility and bioavailability of this toxic metalloid in the environment. However, calcium arsenates usually occur in trace amounts dominated by other phases, making their detection, identification, and quantification challenging. In this contribution, pharmacolite, haidingerite, and weilite are shown to exhibit subtle but distinct postedge differences in As K-edge X-ray absorption near-edge structure (XANES) spectra and feature characteristic [AsO3]2-, [AsO4]2-, and [AsO4]4- radicals, all derived from the diamagnetic [HAsO4]2- precursor during γ-ray irradiation, in electron paramagnetic resonance (EPR) spectra. In particular, the 75As (nuclear spin I = 3/2 and natural isotope abundance = 100%) hyperfine coupling constants of the [AsO3]2- radicals in pharmacolite and haidingerite as well as other minerals (e.g., calcite and gypsum) are clearly distinct, allowing the unambiguous identification of calcium arsenates by the EPR technique readily at ∼0.1 wt %. Similarly, linear combination fittings of As K-edge XANES spectra demonstrate that pharmacolite and haidingerite at ∼0.1 wt % each in gypsum-rich mixtures can be detected and quantified as well. Therefore, a combination of the EPR and XANES techniques is a powerful approach for the highly sensitive characterization of calcium arsenates in the quest for the safe management and remediation of arsenic contamination. This work demonstrates the highly sensitive characterization of calcium arsenates by integrated electron paramagnetic resonance and synchrotron X-ray absorption spectroscopy.

Antimony speciation, phytochelatin stimulation and toxicity in plants

Antimony (Sb) is a toxic metalloid that has been listed as a priority pollutant. The environmental impacts of Sb have recently attracted attention, but its phytotoxicity and biological transformation remain poorly understood. In this study, Sb speciation and transformation in plant roots was quantified by Sb K-edge X-ray absorption spectroscopy. In addition, the phytotoxicity of antimonate (SbV) on six plant species was assessed by measuring plant photosynthesis, growth, and phytochelatin production induced by SbV. Linear combination fitting of the Sb K-edge X-ray absorption near-edge structure (XANES) spectra indicated reduction of SbV was limited to ∼5–33% of Sb. The data confirmed that Sb-polygalacturonic acid was the predominant chemical form in all plant species (up to 95%), indicating Sb was primarily bound to the cell walls of plant roots. Shell fitting of Sb K-edge X-ray absorption fine-structure (EXAFS) spectra confirmed Sb–O and Sb–C were the dominant scattering paths. The fitting indicated that SbV was bound to hydroxyl functional groups of cell walls, via development of a local coordination environment analogous to Sb-polygalacturonic acid. This is the first study to demonstrate the key role of plant cell walls in Sb metabolism.

Self-Assembly Ultrathin Fe-Terephthalic Acid as Synergistic Catalytic Platforms for Selective Hydrogenation

Self-Assembly Ultrathin Fe-Terephthalic Acid as Synergistic Catalytic Platforms for Selective Hydrogenation

Structure of Aqueous Scandium(III) Nitrate Solution by Large-Angle X-ray Scattering Combined with Empirical Potential Refinement Modeling, X-ray Absorption Fine Structure, and Discrete Variational Xα Calculations

Abstract Large-Angle X-ray scattering (LAXS) and Sc K X-ray absorption near-edge structure (XANES) measurements are made at room temperature on a 1 M (= mol dm−3) Sc(NO3)3 aqueous solution. The X-ray interference function is subjected to an empirical potential structure refinement (EPSR) modeling to extract the site-site pair correlation functions, the coordination number distribution, and the spatial density functions (three-dimensional structure). The LAXS analysis combined with EPSR reveals that Sc3+ is surrounded by six or seven water molecules and one oxygen atom of NO3− with an Sc3+-Ow (H2O) and Sc3+-ON (NO3−) distance of 2.14 Å. NO3− has a weak solvation shell with a broad distribution of coordination numbers with the highest population of nine at an N-Ow distance of 3.66 Å. Solvent water forms the tetrahedral network structure. The XANES spectrum is compared with simulated spectra on various coordination geometries of an ScO7 moiety with a discrete variational Xα (DV-Xα) molecular orbital (MO) method. A distorted monocapped trigonal prism structure of Sc3+ best reproduced the experimental pre-peak due to the Sc 1s → 3d transition in the XANES spectrum.

Operando Photo-Electrochemical Catalysts Synchrotron Studies.

The attempts to develop efficient methods of solar energy conversion into chemical fuel are ongoing amid climate changes associated with global warming. Photo-electrocatalytic (PEC) water splitting and CO2 reduction reactions show high potential to tackle this challenge. However, the development of economically feasible solutions of PEC solar energy conversion requires novel efficient and stable earth-abundant nanostructured materials. The latter are hardly available without detailed understanding of the local atomic and electronic structure dynamics and mechanisms of the processes occurring during chemical reactions on the catalyst–electrolyte interface. This review considers recent efforts to study photo-electrocatalytic reactions using in situ and operando synchrotron spectroscopies. Particular attention is paid to the operando reaction mechanisms, which were established using X-ray Absorption (XAS) and X-ray Photoelectron (XPS) Spectroscopies. Operando cells that are needed to perform such experiments on synchrotron are covered. Classical and modern theoretical approaches to extract structural information from X-ray Absorption Near-Edge Structure (XANES) spectra are discussed.

Strain-Assisted Single Pt Sites on High-Curvature MoS 2 Surface for Ultrasensitive H 2 S Sensing

Strain-Assisted Single Pt Sites on High-Curvature MoS ₂ Surface for Ultrasensitive H ₂ S Sensing

Microwave-Assisted Coprecipitation Synthesis and Local Structural Investigation on NiO, β-Ni(OH)2/Co3O4 Nanosheets, and Co3O4 Nanorods Using X-ray Absorption Spectroscopy at Co-Ni K-edge and Synchrotron X-ray Diffraction.

Developing the most straightforward, cheapest, and eco-friendly approaches for synthesizing nanostructures with well-defined morphology having the highest possible surface area to volume ratio is challenging for design and process. In the present work, nanosheets of NiO and β-Ni(OH)2/Co3O4, and nanorods of Co3O4 have been synthesized at a large scale via the microwave-assisted chemical coprecipitation method under low temperature and atmospheric pressure. X-ray absorption spectroscopy (XAS) measurements, which comprises both X-ray absorption near-edge structure (XANES) and extended X-ray absorption fine structure (EXAFS) techniques, have been carried out at Co and Ni K-edges to probe the electronic structure of the samples. Also, the local atomic structural, chemical bonding, morphological, and optical properties of the sample were systematically investigated using XAS, synchrotron X-ray diffraction (SXRD), Raman spectroscopy, FTIR, transmission electron microscopy (TEM), and UV–visible spectroscopy. The normalized XANES spectra of the β-Ni(OH)2/Co3O4 nanosheets show the presence of Ni2+ and a mixed oxidation state of Co. The disorder factor decreases from β-Ni(OH)2/Co3O4 to Co3O4 with increasing Co–O bond length. The SXRD pattern analyzed using Rietveld refinement reveals that NiO has a face-centered cubic phase, Co3O4 has the standard spinal structure, and β-Ni(OH)2/Co3O4 has a mixed phase of hexagonal and cubic structures. TEM images revealed the formation of nanosheets for NiO and β-Ni(OH)2/Co3O4 samples and nanorods for Co3O4 samples. FTIR and Raman spectra show the formation of β-Ni(OH)2/Co3O4, which reveals the fingerprints of Ni–O and Co–O.

Bromine K-Edge X-Ray Absorption Near-Edge Structure Analysis on Hydrobromide-Salt Crystals and the Solid Dispersion of Active Pharmaceutical Ingredients.

Bromine K-edge X-ray absorption near-edge structure (XANES) spectroscopy analyses were used to evaluate the crystals of the active pharmaceutical ingredients, eletriptan hydrobromide, dextromethorphan hydrobromide and scopolamine hydrobromide salts and the solid dispersion of eletriptan hydrobromide. The crystals and the solid dispersion of the active pharmaceutical ingredient (API) salts could be discriminated based on the shape of the XANES spectra. The differences in the shape of XANES spectra was ascribable to the differences in the interatomic interactions of the bromine ions based on the crystal structures. Ratio of the eletriptan hydrobromide α-form crystal in mixed powders of α-form and monohydrate crystals could be quantified by the linear-combination fitting using their XANES spectra. These results indicated that the XANES spectroscopy are a potent method for evaluating the APIs of pharmaceutical formulations even at the higher energy region around the bromine K-edge of 13470 eV.

Soft X-ray Spectroscopy Simulations with Multiconfigurational Wave Function Theory: Spectrum Completeness, Sub-eV Accuracy, and Quantitative Reproduction of Line Shapes.

Multireference methods are known for their ability to accurately treat states of very different nature in many molecular systems, facilitating high-quality simulations of a large variety of spectroscopic techniques. Here, we couple the multiconfigurational restricted active space self-consistent field RASSCF/RASPT2 method (of the CASSCF/CASPT2 methods family) to the displaced harmonic oscillator (DHO) model, to simulate soft X-ray spectroscopy. We applied such an RASSCF/RASPT2+DHO approach at the K-edges of various second-row elements for a set of small organic molecules that have been recently investigated at other levels of theory. X-ray absorption near-edge structure (XANES) and X-ray photoelectron spectroscopy (XPS) are simulated with a sub-eV accuracy and a correct description of the spectral line shapes. The method is extremely sensitive to the observed spectral shifts on a series of differently fluorinated ethylene systems, provides spectral fingerprints to distinguish between stable conformers of the glycine molecule, and accurately captures the vibrationally resolved carbon K-edge spectrum of formaldehyde. Differences with other theoretical methods are demonstrated, which show the advantages of employing a multireference/multiconfigurational approach. A protocol to systematically increase the number of core-excited states considered while maintaining a contained computational cost is presented. Insight is eventually provided for the effects caused by removing core–electrons from a given atom in terms of bond rearrangement and influence on the resulting spectral shapes within a unitary orbital-based framework for both XPS and XANES spectra.

Interpreting the Operando X-ray Absorption Near-Edge Structure of Supported Cu and CuPd Clusters in Conditions of Oxidative Dehydrogenation of Propane: Dynamic Changes in Composition and Size

Supported subnano-cluster catalysts are highly dynamic, developing true active sites only under the pressures and temperatures of reaction conditions. Operando X-ray absorption near-edge structure (XANES) spectroscopy can track changes in the oxidation state and the local environment of cluster atoms, providing insight into the development of these active sites. While bulk metal, oxide, and hydroxide standards are often used for fitting experimental XANES spectra to obtain average oxidation states, we recently showed that computed cluster standards of relevant compositions are a more suitable basis, producing more accurate fits. Here, we theoretically interpret the operando XANES of supported Cu3Pd and Cu4 clusters during temperature-programmed reaction (TPRx) of oxidative dehydrogenation of propane. We use an expanded basis set including both globally optimized computed clusters and bulk standards. Not only can we track reversible composition/oxidation state change with temperature, but also the irreversible growth of the bulk fraction upon heating, which we attribute to cluster sintering. This has important implications for the mechanism of the catalyzed reaction and the nature of the available active sites. We propose that operando XANES provides most significant insight into the nature of supported cluster catalysts in reaction conditions when interpreted using mixed computed cluster and bulk standards.

The formation of a one-dimensional van der Waals selenium crystal from the three-dimensional amorphous phase: A spectroscopic signature of van der Waals bonding

Trigonal selenium is a prototypical one-dimensional (1D) van der Waals (vdW) solid, where covalently bonded helical chains are held together by weaker vdW forces. In this work, we have studied structural transformation from a three-dimensional amorphous phase of non-interacting Se chains into a 1D vdW crystal using x-ray absorption spectroscopy. The crystallization process and establishment of vdW interaction are accompanied by elongation and weakening of covalent Se-Se bonds. We have found a unique signature in the x-ray absorption near-edge structure spectrum that is associated with vdW bonds and can be used to identify the formation of the latter. We believe that a similar approach can be used to study other 1D vdW solids, such as transition-metal trichalcogenides, and particularly stress the usefulness of x-ray absorption spectroscopy to identify vdW bonds.

Covalency in actinide(iv) hexachlorides in relation to the chlorine K-edge X-ray absorption structure.

Chlorine K-edge X-ray absorption near edge structure (XANES) in actinideIV hexachlorides, [AnCl6]2− (An = Th–Pu), is calculated with relativistic multiconfiguration wavefunction theory (WFT). Of particular focus is a 3-peak feature emerging from U toward Pu, and its assignment in terms of donation bonding to the An 5f vs. 6d shells. With or without spin–orbit coupling, the calculated and previously measured XANES spectra are in excellent agreement with respect to relative peak positions, relative peak intensities, and peak assignments. Metal–ligand bonding analyses from WFT and Kohn–Sham theory (KST) predict comparable An 5f and 6d covalency from U to Np and Pu. Although some frontier molecular orbitals in the KST calculations display increasing An 5f–Cl 3p mixing from Th to Pu, because of energetic stabilization of 5f relative to the Cl 3p combinations of the matching symmetry, increasing hybridization is neither seen in the WFT natural orbitals, nor is it reflected in the calculated bond orders. The appearance of the pre-edge peaks from U to Pu and their relative intensities are rationalized simply by the energetic separation of transitions to 6d t2gversus transitions to weakly-bonded and strongly stabilized a2u, t2u and t1u orbitals with 5f character. The study highlights potential pitfalls when interpreting XANES spectra based on ground state Kohn–Sham molecular orbitals.

X-ray absorption spectra of f-element complexes: insight from relativistic multiconfigurational wavefunction theory.

X-ray absorption near edge structure (XANES) spectroscopy, coupled with ab initio calculations, has emerged as the state-of-the-art tool for elucidating the metal-ligand bonding in f-element complexes. This highlight presents recent efforts in calculating XANES spectra of lanthanide and actinide compounds with relativistic multiconfiguration wavefunction approaches that account for differences in donation bonding in the ground state (GS) versus a core-excited state (ES), multiplet effects, and spin-orbit-coupling. With the GS and ES wavefunctions available, including spin-orbit effects, an arsenal of chemical bonding tools that are popular among chemists can be applied to rationalize the observed intensities in terms of covalent bonding.