In this paper, a two-dimensional axisymmetric model of a thermoacoustic Stirling engine with a short tube where the cross section narrows has been developed. The transient streamlines and vortex formation through short tubes with different diameters in oscillatory flow have been investigated visually by computational fluid dynamics. Three dimensionless parameters, Reynolds number (Re), Keulegan-Carpenter number (KC), and Womersley number (Wo), are used to describe the flow regime and vortex characteristic throughout the short tube. High Re and Wo numbers indicate that the oscillatory flow develops into the turbulent flow through the short tube. The KC number has a direct effect on the transition of streamlines and the development of the vortex. For a small cross section where KC ≈ 1, streamlines rotate and the vortex forms at both sides of the short tube. The vortex stays in the main flow region, and intensity varies as streamlines are convected downstream. The velocity along the radius presents a Poiseuille profile within the influence of the vortex. For a large cross section where KC < 1, streamlines pass the short tube with little rotation and the vortex disappears in the main flow region and confines near the short tube. The velocity profile tends to be flat. The nonlinear effects including instantaneous pressure drop and power dissipation throughout the short tube are also discussed. It shows that the time averaged pressure drop is generated at the cost of power dissipation. Finally, the “effectiveness” is applied to evaluate the performance of the short tube. The results suggest that increasing the diameter of the short tube is in favor of reducing power dissipation, which is beneficial to improve “effectiveness.”