Estuarine salt marshes globally face numerous threats, not least of which include changing hydrological conditions from human alteration and climate change impact to river flows, sea levels and coastal processes. While changing inundation is evident in many systems, often, the detail of which estuarine processes are changing and to what extent they contribute to flooding and habitat distribution remains unknown. Water levels in the microtidal Swan River Estuary (Derbarl Yerrigan), Western Australia, which has experienced significant climate drying since the 1970's, were disaggregated to assess contributions from tides, mean sea level, barometric effects, river flows and river-tide interactions. These contributions were mapped to the habitat of a salt marsh community. The effect of declining river flows on tides were further assessed by wavelet and harmonic analyses. We found that tides and barometric effects presently dominate flooding events of relevance to the salt marsh community. Declining winter runoff resulted in an increase in the tidal amplitude in the upper estuary. There was also a positive winter mean sea level pressure trend, associated with the winter rainfall decline. Altogether, there was zero net change to flooding of a salt marsh in the estuary from these processes. Therefore, steady sea level rise masked changes in the relative contribution of flooding mechanisms in the estuary which have implications for the stability of the marsh ecosystem. Disaggregating process contributions to salt marsh water levels offers a means to better assess the hydrodynamic processes presently sustaining salt marsh communities and to inform how they might change in the future. These results show that numerous hydrological processes can interact to mask non-stationary changes to estuarine hydrology supporting salt marsh habitat.
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