The National Institute of Ecology in Seocheon, Chungcheongnam-do, exhibits and studies Korea’s diverse ecosystems to communicate the importance of biodiversity conservation to the general public. The site faces the challenge of preserving the natural environment while ensuring visitor convenience. This requires systematic data collection to quickly detect and respond to threats from pests and natural disasters. In this study, high-resolution orthoimages were acquired to monitor ecological changes using unmanned aerial vehicles. Images were captured through flights monthly from March to July 2024. Digital elevation models and orthoimages were generated to identify dead trees and assess areas of damage caused by heavy rainfall. The study covered an area of 998,655 m2, and the image resolution was 3.6 cm/pixel. The orthophotos were useful in identifying plant pest damage. They also helped evaluate damage caused by rain, showing that the total area of damage was 29,384 m2, mainly due to soil erosion. Furthermore, it is expected that the accumulation of such unmanned remote sensing image data can also be applied to the safety management of various natural conservation areas and public facilities.