Wild Salmonids Research Articles

Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid Fish.

The gastrointestinal tract (GIT) of fish supports a dynamic microbial ecosystem that is intimately linked to host nutrient acquisition, epithelial development, immune system priming, and disease prevention, and we are far from understanding the complex interactions among parasites, symbiotic gut bacteria, and host fitness. Here, we analyzed the effects of environmental factors and parasitic burdens on the microbial composition and diversity within the GIT of the brown trout (Salmo trutta). We focused on the emerging dangerous salmonid myxozoan parasite Tetracapsuloides bryosalmonae, which causes proliferative kidney disease in salmonid fish, to demonstrate the potential role of GIT micobiomes in the modulation of host-parasite relationships. The microbial diversity in the GIT displayed clear clustering according to the river of origin, while considerable variation was also found among fish from the same river. Environmental variables such as oxygen concentration, water temperature, and river morphometry strongly associated with both the river microbial community and the GIT microbiome, supporting the role of the environment in microbial assemblage and the relative insignificance of the host genotype and gender. Contrary to expectations, the parasite load exhibited a significant positive relationship with the richness of the GIT microbiome. Many operational taxonomic units (OTUs; n = 202) are more abundant in T.bryosalmonae-infected fish, suggesting that brown trout with large parasite burdens are prone to lose their GIT microbiome homeostasis. The OTUs with the strongest increase in infected trout are mostly nonpathogenic aquatic, anaerobic sediment/sludge, or ruminant bacteria. Our results underscore the significance of the interactions among parasitic disease, abiotic factors, and the GIT microbiome in disease etiology. IMPORTANCE Cohabiting microorganisms play diverse and important roles in the biology of multicellular hosts, but their diversity and interactions with abiotic and biotic factors remain largely unsurveyed. Nevertheless, it is becoming increasingly clear that many properties of host phenotypes reflect contributions from the associated microbiome. We focus on a question of how parasites, the host genetic background, and abiotic factors influence the microbiome in salmonid hosts by using a host-parasite model consisting of wild brown trout (Salmo trutta) and the myxozoan Tetracapsuloides bryosalmonae, which causes widely distributed proliferative kidney disease. We show that parasite infection increases the frequency of bacteria from the surrounding river water community, reflecting impaired homeostasis in the fish gut. Our results also demonstrate the importance of abiotic environmental factors and host size in the assemblage of the gut microbiome of fish and the relative insignificance of the host genotype and gender.

Quantitative risk assessment of salmon louse-induced mortality of seaward-migrating post-smolt Atlantic salmon

The Norwegian government recently implemented a new management system to regulate salmon farming in Norway, aiming to promote environmentally sustainable growth in the aquaculture industry. The Norwegian coast has been divided into 13 production zones and the volume of salmonid production in the zones will be regulated based on salmon lice effects on wild salmonids. Here we present a model for assessing salmon louse-induced mortality of seaward-migrating post-smolts of Atlantic salmon. The model quantifies expected salmon lice infestations and louse-induced mortality of migrating post-smolt salmon from 401 salmon rivers draining into Norwegian coastal waters. It is assumed that migrating post-smolts follow the shortest path from river outlets to the high seas, at constant progression rates. During this migration, fish are infested by salmon lice of farm origin according to an empirical infestation model. Furthermore, louse-induced mortality is estimated from the estimated louse infestations. Rivers draining into production zones on the West Coast of Norway were at the highest risk of adverse lice effects. In comparison, rivers draining into northerly production zones, along with the southernmost production zone, were at lower risk. After adjusting for standing stock biomass, estimates of louse-egg output varied by factors of up to 8 between production zones. Correlation between biomass adjusted output of louse infestation and densities of farmed salmon in the production zones suggests that a large-scale density-dependent host-parasite effect is a major driver of louse infestation rates and parasite-induced mortality. The estimates are sensitive to many of the processes in the chain of events in the model. Nevertheless, we argue that the model is suited to assess spatial and temporal risks associated with farm-origin salmon lice.

Formal comment on: Piscine reovirus: Genomic and molecular phylogenetic analysis from farmed and wild salmonids collected on the Canada/US Pacific Coast.

This formal comment is in response to Siah et al. [1], Piscine Reovirus: Genomic and Molecular Phylogenetic Analysis from Farmed and Wild Salmonids Collected on the Canada/US Pacific Coast, with a subsequent correction (Siah et al. 2016 [2]). Although a correction for this paper was published on Oct. 12, 2016, (Siah et al. 2016 [2]), there continues to be inadequate supporting evidence for the primary conclusion that PRV genetic sequences are temporally and spatially homogeneous in salmonid species across the northeastern Pacific region. The evidence in this paper warrants thorough consideration. Piscine orthoreovirus (PRV) causes acute infection of the red blood cells in salmon (Finstad et al. [3]; Haatveit et al. 2017 [4]). It is the causative agent of the emerging farm salmon disease Heart and Skeletal Muscle Inflammation (HSMI) (Wessel et al. 2017 [5]) with clinical symptoms which can include lethargy, anemia, anorexia and mortality (Kongtorp et al. 2004 [6]). Palacios et al. [7] expressed concerns about the transfer of PRV from farmed to wild fish due to its contagious nature. PRV is now considered ubiquitous in farmed Atlantic salmon (Haatveit et al. 2017 [4]) and has an estimated 80% prevalence rate among BC farmed salmon (Kibenge et al. 2013 [8]). HSMI has recently been diagnosed in British Columbia (BC), Canada (Di Cicco et al. 2017 [9]). Hence, release of PRV from salmon farms into Pacific salmon habitat is a significant management concern in the eastern Pacific Ocean. In the correction, Siah et al. [2] acknowledge that the conclusion that PRV has not been recently introduced to BC was overstated. However their supporting evidence that … salmonids from western North America Pacific waters carried PRV RNA sequences for at least 13 years with little genetic differentiation among sequence types in selected samples spanning 2001 to 2014 remains insufficient. Their conclusion appears to be highly dependent on six unique sequences of PRV segment S1, detected by Siah et al. [1]: {type:entrez-nucleotide,attrs:{text:KR478642,term_id:931323276,term_text:KR478642}}KR478642: collected in May 2001 {type:entrez-nucleotide,attrs:{text:KR478643,term_id:931323280,term_text:KR478643}}KR478643: collected in Aug. 2001 {type:entrez-nucleotide,attrs:{text:KR478644,term_id:931323283,term_text:KR478644}}KR478644: collected in Aug. 2001 {type:entrez-nucleotide,attrs:{text:KR347078,term_id:931316047,term_text:KR347078}}KR347078: collected in Aug. 2001 {type:entrez-nucleotide,attrs:{text:KR347079,term_id:931316050,term_text:KR347079}}KR347079: collected in Aug. 2001 {type:entrez-nucleotide,attrs:{text:KR347080,term_id:931316053,term_text:KR347080}}KR347080: collected in Mar. 2005 These six Siah et al. [1] sequences collected in 2001 and 2005 (submitted to GenBank April—May 2015) predate those collected by Kibenge et al. [10,11] by seven years and are nearly identical to the isolates Siah et al. [1] collected in 2013 and 2014. Thus, these six PRV isolates appear to be highly resistant to mutation over a 13-year interval 2001–2014, which is atypical for RNA viruses, generally known to exhibit a high mutation rate (Chao et al. [12]). Drake and Holland [13] estimate the genomic mutation rate (U) to be between 1 and 0.1 for most RNA viruses, where U is G x u, G is the genome size in nucleotides, and u is the per-nucleotide mutation rate. Weight of evidence for longer-term PRV presence in BC Siah et al. [1] cite detection of PRV in a wild Steelhead trout (O. mykiss) collected in 1977 in support of longer-term PRV presence in BC. This result is cited from Marty et al. [14], who provided no S1 segment sequence information to verify the PRV strain identity as per the sequence groupings reported by both Kibenge et al. [8] and Garseth et al. [15]. The recent discovery of the widespread occurrence of PRV-2 across the North Pacific (Takano et al. 2016 [16]) raises the question: Was the 1977 steelhead infected with PRV-2 or PRV? In absence of S1 sequencing this uncertainty cannot be resolved. Furthermore, this result could not be replicated by a second laboratory (Purcell and Thompson [17]) and therefore warrants qualification as a non-repeatable result and a suspect positive lacking sufficient robustness to provide evidence critical to the temporal presence of PRV in BC.

Behavioural responses of infective-stage copepodids of the salmon louse (Lepeophtheirus salmonis, Copepoda:Caligidae) to host-related sensory cues.

The salmon louse (Lepeophtheirus salmonis [Krøyer]) is an ectoparasitic copepod that causes disease in farmed Atlantic salmon (Salmo salar) and may play a role in the decline of some wild salmonid populations. Controlling lice infestations is a major cost for the salmon industry; this has stimulated the pursuit of alternative approaches to controlling them. One such approach involves determining, and then disrupting, the sensory cues used by the parasite to find its host. In this context, we examined the behavioural responses of lice copepodids to light flicker-simulating light reflecting from the sides of the salmon host and/or the shadows cast by fish passing overhead-and water-soluble chemicals released from the skin of the salmon. From these observations, we estimate that visual cues such as those presented here would operate at relatively long range (metres to tens of metres). A diffuse host-related olfactory cue stimulated swimming, however, it remains unclear whether olfactory cues provide directional information. The observations presented herein could be used to disrupt the link between the parasite and host fish, using a large number of traps deployed at a distance from a salmon farm, for example, thereby reducing sea lice infestation pressure.

A survey of salmon gill poxvirus (SGPV) in wild salmonids in Norway

In 2016, the Norwegian health monitoring programme for wild salmonids conducted a real-time PCR-based screening for salmon gill poxvirus (SGPV) in anadromous Arctic char (Salvelinus alpinus L.), anadromous and non-anadromous Atlantic salmon (Salmo salar L.) and trout (Salmo trutta L.). SGPV was widely distributed in wild Atlantic salmon returning from marine migration. In addition, characteristic gill lesions, including apoptosis, were detected in this species. A low amount of SGPV DNA, as indicated by high Ct-values, was detected in anadromous trout, but only in fish cohabiting with SGPV-positive salmon. SGPV was not detected in trout and salmon from non-anadromous water courses, and thus seems to be primarily linked to the marine environment. This could indicate that trout are not a natural host for the virus. SGPV was not detected in Arctic char but, due to a low sample size, these results are inconclusive. The use of freshwater from anadromous water sources may constitute a risk of introducing SGPV to aquaculture facilities. Moreover, SGPV-infected Atlantic salmon farms will hold considerable potential for virus propagation and spillback to wild populations. This interaction should therefore be further investigated.

Disentangling the role of sea lice on the marine survival of Atlantic salmon

AbstractThe effects of sea lice on the marine survival of wild salmonids are widely debated. In Norway this debate has reached a crescendo as the Norwegian government has recently ratified a management system where the growth in the salmonid aquaculture industry will be conditional on regional estimated impact of salmon lice on wild fish. Sea lice have thus become the most prominent obstacle to the stated political aim of quintupling aquaculture production in Norway by 2050. Scientific documentation that salmon lice impact the marine survival of salmon is robust. However, it is also evident that marine survival of salmon is strongly impacted by other factors, and that the effect of salmon lice is most likely an integral part of these other mortality factors. In this paper, our goal is to discuss and give advice on how managers and policy makers should handle this complexity, and to identify the greatest challenges in using scientific results to construct robust management rules. Inadequate extrapolation from the scale of known effects to the scale of management implementation may initially give a false impression of scientific certainty, but will eventually fuel upsetting disagreements among stakeholders as they gradually uncover the shaky foundation of the implemented policy. Thus, using a single model and parameter to determine management advice is not warranted, as no single data point reflects the natural complexity of nature. Furthermore, robust management rules should be based on unambiguous definitions of key concepts. Finally, despite the scientific consensus that salmon lice are a risk to salmon, studies on wild populations in situ that accurately quantify the impact of salmon lice are still urgently needed. We give advice on how this can be accomplished.

Emergence Time and Skin Melanin Spot Patterns Do Not Correlate with Growth Performance, Social Competitive Ability or Stress Response in Farmed Rainbow Trout.

In wild salmonid fish, specific individual behavioral traits have been correlated with the timing of fry emergence from their gravel spawning nests; Early emerging fish display more aggressive behavior and have a higher probability of becoming socially dominant, compared to fish that emerge at a later stage. Apart from aggression and dominance, other behavioral and metabolic traits, such as boldness, metabolic rate, or growth, have also been linked to emergence time. Altogether, the traits of early- and late-emerging fish resemble those of the proactive and reactive stress-coping style, respectively. As proactive fish are considered more resilient to stress, it may be desirable to select these for aquaculture production. However, it is currently unclear to what extent the link between emergence time and stress-coping styles is maintained in the selective breeding of farmed fish. In the present study, eyed eggs from a commercial supplier were hatched, and larvae fractionated according to their emergence time. Later on, juvenile fish from different emergence fractions were subjected to a stress challenge and also tested to evaluate their competitive ability for food. Beyond some slight dissimilarities in the acute stress responses, emergence fraction displayed no correlation with growth rates, or the ability to compete for feed. Within the whole group of fish utilized in the experiments, no relationship between skin melanin spot pattern and growth performance, stress response intensity, or competitive ability was found. Altogether, the differences in physiological traits related to emergence time were not as strong as those found in earlier studies. It is hypothesized, that the origin and degree of domestication of the fish might be partly responsible for this. The predictive value of skin spots or emergence time to infer the fish stress coping style in farmed fish is also discussed.

Salmon lice infestations on sea trout predicts infestations on migrating salmon post-smolts

Abstract Impacts of sea lice (Lepeophtheirus salmonis or Caligus spp.) on wild salmonids is currently one of the most important issues facing management of fish farms in salmon producing countries in the northern hemisphere. Surveillance of sea lice on wild Atlantic salmon (Salmo salar) is often hampered by the ability to catch enough migrating post-smolts. Therefore, sea lice abundance on anadromous trout (Salmo trutta) is often used to infer sea lice abundance on migrating salmon post-smolt. However, the assumption that there is a relationship between the abundance of lice on salmon and trout has never been tested. Here we use a dataset of sea lice on salmon post-smolt and sea trout that have been caught simultaneously in trawl hauls, to evaluate the correlation in abundance of sea lice between the two species using various statistical models. We demonstrate that trout generally has higher abundances of sea lice than salmon. Average lice per gram fish on sea trout (log transformed) predicted the abundance of lice on salmon best. Negative binomial models of lice counts were preferable to using trout lice counts as direct estimates of salmon lice abundance, and they had better predictive ability than logit models of high (vs. low) lice counts. Including the size of the salmon increased the predictive ability of the model, but these data are not generally available. The effect of salmon weight may have been a direct effect of body size, or an indirect effect of time spent in marine waters. Finally, we predict lower salmon lice counts on migrating salmon with our selected binomial model than with the current method of using trout lice counts as a direct estimator on salmon lice counts, and demonstrate that management advice would change considerably depending on the chosen method.

Experimental challenges with Renibacterium salmoninarum in Arctic charr Salvelinus alpinus.

Arctic charr Salvelinus alpinus L. is an important species in Icelandic aquaculture and the most common wild salmonid in Iceland. A study on the course of infection with the bacterium Renibacterium salmoninarum was conducted using 3 different challenge methods in brackish and fresh water. Bacterial isolation, ELISA and PCR tests were used for detection of the bacterium in multiple organ samples. In an experiment, run for 34 wk in brackish water, infection was established by intraperitoneal injection with 5 × 106 colony forming units (CFU) fish-1. There were external and internal symptoms of bacterial kidney disease (BKD) and mortalities between 6 and 13 wk after injection. A cohabitation trial was run simultaneously and infection was well established after 4 wk, as demonstrated by the detection methods applied. Symptoms of BKD were not seen and all but 1 cohabitant survived. In a separate experiment, infection was established by pumping a fixed amount of water from a tank with fingerlings infected by intraperitoneal injection into tanks with naïve fish, in fresh or brackish water, for 6 wk. Fish in the inflow tanks were reared for an additional 3 wk. There were neither macroscopic symptoms nor mortalities. ELISA and PCR tests showed that infection started to take hold after 3 wk. The challenge trials demonstrated that Arctic charr is susceptible to R. salmoninarum. Cohabitation and inflow of water from tanks with infected fish provide useful models for further studies on R. salmoninarum infection acquired in a natural way in Arctic charr.

Protein degradation systems in the skeletal muscles of parr and smolt Atlantic salmon Salmo salar L. and brown trout Salmo trutta L.

Although protein degradation limits the rate of muscle growth in fish, the role of proteolytic systems responsible for degrading myofibrillar proteins in skeletal muscle is not well defined. The study herein aims to evaluate the role of calpains (calcium-activated proteases) and proteasomes (ATP-dependent proteases) in mediating muscle protein turnover at different life stages in wild salmonids. Protease activities were estimated in Atlantic salmon (Salmo salar L.) and brown trout (Salmo trutta L.) parr and smolts from the Indera River (Kola Peninsula, Russia). Calpain and proteasome activities in Atlantic salmon skeletal muscles were lower in smolts as compared with parr. Reduced muscle protein degradation accompanying Atlantic salmon parr-smolt transformation appeared to provide intense muscle growth essential for a minimum threshold size achievement that is required for smoltification. Calpain and proteasome activities in brown trout parr and smolts at age 3+ did not significantly differ. However, calpain activity was higher in smolts brown trout 4+ as compared with parr, while proteasome activity was lower. Results suggest that brown trout smoltification does not correspond with intense muscle growth and is more facultative and plastic in comparison with Atlantic salmon smoltification. Obtained data on muscle protein degradation capacity as well as length-weight parameters of fish reflect differences between salmon and trout in growth and smoltification strategies.

Factors influencing the long-term dynamics of larval sea lice density at east and west coast locations in Scotland

Sea lice (Copepoda: Caligidae) are marine copepods that parasitize finfish, and in cases of high infestation can result in severe epithelial damage and mortality. In Scotland, 2 species of sea louse, Lepeophtheirus salmonis and Caligus elongatus, pose a significant economic burden to the marine Atlantic salmon aquaculture industry and potentially impact wild salmonids. The purpose of this study was to determine how the density of pelagic sea lice is affected by external variables, in order to improve our understanding of sea lice dynamics. Long-term data from 2 sampling sites on the east and west coasts of Scotland were modelled independently in conjunction with environmental and anthropogenic variables. Statistical analysis identified that at the east coast site, the most influential factor affecting lice density was salinity. On the west coast, salinity, rainfall and farmed salmon production year were most influential. Molecular and morphological techniques also showed that the individuals recorded on the east coast were C. elongatus, a generalist copepod parasite, whereas only the salmonid-specific L. salmonis were found on the west. These results reiterate the role of environmental factors in influencing sea lice dynamics, and that salmonids are the primary hosts of sea lice on the west coast, but there could be non-salmonid host species as well as salmonid species influencing east coast sea lice densities.

Comparative study of proliferative kidney disease in grayling Thymallus thymallus and brown trout Salmo trutta fario: an exposure experiment.

Proliferative kidney disease (PKD) is an emerging disease threatening wild salmonid populations, with the myxozoan parasite Tetracapsuloides bryosalmonae as the causative agent. Species differences in parasite susceptibility and disease-induced mortality seem to exist. The aim of the present study was to compare incidence, pathology and mortality of PKD in grayling Thymallus thymallus and brown trout Salmo trutta under identical semi-natural conditions. Young-of-the-year grayling and brown trout, free of T. bryosalmonae, were jointly exposed in cage compartments in a river in the northeast of Switzerland during 3 summer months. Wild brown trout were caught by electrofishing near the cage, and PKD status was compared with that of caged animals. Cage-exposed grayling showed a PKD incidence of 1%, regardless of whether parasite infection was determined by means of real-time PCR or histopathology/immunohistochemistry. In contrast, PKD incidence of caged brown trout was 77%. This value was not significantly different to PKD prevalence of wild brown trout caught above and below the cage (60 and 91%, respectively). Mortality in grayling was significantly higher compared with that of brown trout (40 versus 23%); however, grayling mortality was not considered to be associated with PKD. Mortality of caged and infected brown trout was significantly higher than mortality of non-infected caged trout. Histopathology indicated an ongoing mostly acute or chronic active infection in brown trout, which survived until the end of exposure. The results suggest that grayling are less susceptible to infection with T. bryosalmonae compared with brown trout under the tested field conditions.

Organization of glomerular territories in the olfactory bulb of post-embryonic wild chinook salmon Oncorhynchus tshawytscha.

The post-embryonic odor imprinting paradigm suggests Chinook salmon (Oncorhynchus tshawytscha) acquire memory to stream-specific amino acid olfactory odors prior to emergence as fry. Because effects of olfactory experience on development can be examined by mapping olfactory sensory neurons extending into distinct territories of glomerular neuropil in the olfactory bulb, glomerular patterning from early yolk-sac larva to fry was documented in wild salmonids, a temporal scale not yet thoroughly explored. Labeling olfactory sensory neurons with anti-keyhole limpet hemocyanin (anti-KLH) revealed seven spatially conserved glomerular territories visible at hatch and well established by the late yolk-sac larva developmental stage. Because of the responsiveness of microvillous olfactory sensory neurons to amino acids, corresponding glomeruli in the lateral bulbar region were mapped using anti-calretinin. The dorsolateral territory, distinct glomeruli of the lateral glomerular territory and the ventromedial glomeruli were immunoreactive to both KLH and calretinin. This study offers a morphological description of glomerular patterning in post-embryonic stages in wild Chinook salmon, a temporal window previously shown to be significant for olfactory imprinting. J. Morphol. 278:464-474, 2017. © 2017 Wiley Periodicals, Inc.

Tetracapsuloides bryosalmonae persists in brown trout Salmo trutta for five years post exposure.

Tetracapsuloides bryosalmonae is a malacosporean parasite and the causative agent of proliferative kidney disease (PKD) that seriously impacts farmed and wild salmonids. The parasite's life cycle includes an invertebrate host, the bryozoan Fredericella sultana, and a vertebrate host, salmonid fish. The persistence of T. bryosalmonae in brown trout Salmo trutta for up to 2 yr following exposure is well documented. Results from the present study confirmed that one brown trout that had recovered from PKD did not completely clear the parasite from its tissues and that T. bryosalmonae could persist in brown trout for up to 5 yr post exposure. Furthermore, recovered infected brown trout can release viable T. bryosalmonae spores that are able to infect specific pathogen-free F. sultana colonies. T. bryosalmonae DNA was detected by PCR in every organ, and parasite stages were observed in the kidney, spleen and liver following immunohistochemistry. This finding indicates that T. bryosalmonae-infected brown trout can act as asymptomatic carriers and release the parasite for several years after the initial infection, acting as a reservoir of infection, and contributing to the dissemination of the parasite to new areas.

Plasticity in growth of farmed and wild Atlantic salmon: is the increased growth rate of farmed salmon caused by evolutionary adaptations to the commercial diet?

BackgroundDomestication of Atlantic salmon for commercial aquaculture has resulted in farmed salmon displaying substantially higher growth rates than wild salmon under farming conditions. In contrast, growth differences between farmed and wild salmon are much smaller when compared in the wild. The mechanisms underlying this contrast between environments remain largely unknown. It is possible that farmed salmon have adapted to the high-energy pellets developed specifically for aquaculture, contributing to inflated growth differences when fed on this diet. We studied growth and survival of 15 families of farmed, wild and F1 hybrid salmon fed three contrasting diets under hatchery conditions; a commercial salmon pellet diet, a commercial carp pellet diet, and a mixed natural diet consisting of preserved invertebrates commonly found in Norwegian rivers.ResultsFor all groups, despite equal numbers of calories presented by all diets, overall growth reductions as high 68 and 83%, relative to the salmon diet was observed in the carp and natural diet treatments, respectively. Farmed salmon outgrew hybrid (intermediate) and wild salmon in all treatments. The relative growth difference between wild and farmed fish was highest in the carp diet (1: 2.1), intermediate in the salmon diet (1:1.9) and lowest in the natural diet (1:1.6). However, this trend was non-significant, and all groups displayed similar growth reaction norms and plasticity towards differing diets across the treatments.ConclusionsNo indication of genetic-based adaptation to the form or nutritional content of commercial salmon diets was detected in the farmed salmon. Therefore, we conclude that diet alone, at least in the absence of other environmental stressors, is not the primary cause for the large contrast in growth differences between farmed and wild salmon in the hatchery and wild. Additionally, we conclude that genetically-increased appetite is likely to be the primary reason why farmed salmon display higher growth rates than wild salmon when fed ad lib rations under hatchery conditions. Our results contribute towards an understanding of the potential genetic changes that have occurred in farmed salmon in response to domestication, and the potential mechanisms underpinning genetic and ecological interactions between farmed escapees and wild salmonids.Electronic supplementary materialThe online version of this article (doi:10.1186/s12862-016-0841-7) contains supplementary material, which is available to authorized users.

Managing aquatic parasites for reduced drug resistance: lessons from the land.

Atlantic salmon farming is one of the largest aquaculture industries in the world. A major problem in salmon farms is the sea louse ectoparasite Lepeophtheirus salmonis, which can cause stress, secondary infection and sometimes mortality in the salmon host. Sea lice have substantial impacts on farm economics and potentially nearby wild salmonid populations. The most common method of controlling sea louse infestations is application of chemicals. However, most farming regions worldwide have observed resistance to the small set of treatment chemicals that are available. Despite this, there has been little investigation of treatment strategies for managing resistance in aquaculture. In this article, we compare four archetypical treatment strategies inspired by agriculture, where the topic has a rich history of study, and add a fifth strategy common in aquaculture. We use an agent-based model (ABM) to simulate these strategies and their varying applications of chemicals over time and space. We analyse the ABM output to compare how the strategies perform in controlling louse abundance, number of treatments required and levels of resistance in the sea louse population. Our results indicated that among the approaches considered applying chemicals in combination was the most effective over the long term.

Quantification of Saprolegnia parasitica in river water using real-time quantitative PCR: from massive fish mortality to tap drinking water

Since 2010, the Loue River (Franche-Comté, East of France) has been suffering from massive fish kills infested by Saprolegnia parasitica. The river supplies inhabitants of the city of Besançon in drinking water, raising the question of a potential risk through both water consumption and use. We developed a real-time quantitative PCR (qPCR) to quantify S. parasitica in the Loue River as well as in the drinking water. A weak spatial trend is suggested with greater quantities of S. parasitica observed at the sampling station close to the main pumping station. No S. parasitica DNA was detected in the tap water connected to pumping stations. The use of qPCR, which combines specificity, practicality, speed and reliability, appears to be an effective tool to monitor the spatial and temporal dynamics of this oomycete and identify the risk period for wild salmonid populations in the field, for fishery management or in aquaculture.

An epidemiological model for proliferative kidney disease in salmonid populations.

BackgroundProliferative kidney disease (PKD) affects salmonid populations in European and North-American rivers. It is caused by the endoparasitic myxozoan Tetracapsuloides bryosalmonae, which exploits freshwater bryozoans and salmonids as hosts. Incidence and severity of PKD in brown trout populations have recently increased rapidly, causing a decline in fish catches and local extinctions in many river systems. PKD incidence and fish mortality are known to be enhanced by warmer water temperatures. Therefore, environmental change is feared to increase the severity of PKD outbreaks and extend the disease range to higher latitude and altitude regions. We present the first mathematical model regarding the epidemiology of PKD, including the complex life-cycle of its causative agent across multiple hosts.MethodsA dynamical model of PKD epidemiology in riverine host populations is developed. The model accounts for local demographic and epidemiological dynamics of bryozoans and fish, explicitly incorporates the role of temperature, and couples intra-seasonal and inter-seasonal dynamics. The former are described in a continuous-time domain, the latter in a discrete-time domain. Stability and sensitivity analyses are performed to investigate the key processes controlling parasite invasion and persistence.ResultsStability analysis shows that, for realistic parameter ranges, a disease-free system is highly invasible, which implies that the introduction of the parasite in a susceptible community is very likely to trigger a disease outbreak. Sensitivity analysis shows that, when the disease is endemic, the impact of PKD outbreaks is mostly controlled by the rates of disease development in the fish population.ConclusionsThe developed mathematical model helps further our understanding of the modes of transmission of PKD in wild salmonid populations, and provides the basis for the design of interventions or mitigation strategies. It can also be used to project changes in disease severity and prevalence because of temperature regime shifts, and to guide field and laboratory experiments.Electronic supplementary materialThe online version of this article (doi:10.1186/s13071-016-1759-z) contains supplementary material, which is available to authorized users.

Evaluation of water salinity effects on the sea lice Lepeophtheirus salmonis found on farmed Atlantic salmon in Muchalat Inlet, British Columbia, Canada

The sea louse Lepeophtheirus salmonis is a major ectoparasite of both farmed and wild salmonids that causes substantial economic losses to the salmon industry worldwide. However, in British Columbia (BC) sea lice do not typically represent a significant health threat to farmed salmon. Sea lice patterns on Atlantic salmon farms in BC are not fully understood, but it is believed they are highly influenced by sea water salinity levels, which vary dramatically over the year. The objective of this investigation was to evaluate the effects of changes in water salinity on mobile L. salmonis found in farmed salmonids in the Muchalat Inlet, BC, while controlling for potential confounding factors. Using daily farm-based salinity measurements over a 13-year period, we built different salinity metrics to summarize salinity drops within specific periods of time prior to sea lice sampling events. Our results suggest that reduced salinity negatively impacted mobile sea lice in three different ways: first, a direct effect on mobile lice, lasting nomore than one day; second, an effect mediated by detrimental impacts on pre-mobile lice stages; and third, an effect possibly associated with reduced fecundity of parents of that lice cohort. These findings confirm the important role of salinity on sea lice population dynamics in BC, and contribute new knowledge which is useful in understanding sea lice patterns and determinants in this region. Relevance statementWe provided evidence that salinity can naturally control sea lice in British Columbia.

Quantifying the influence of salinity and temperature on the population dynamics of a marine ectoparasite

Sea lice are common ectoparasites of farmed and wild salmonids and can cause substantial morbidity and mortality in their hosts. While sea lice infections are common in estuarine areas with variable salinity, the effects of salinity on population dynamics are poorly understood. We used existing literature to parameterize salinity-dependent logistic mortality curves for different life stages of sea lice. We then used population matrix models to characterize the effects of temperature and salinity on sea louse population growth. Our models showed that low salinity decreases survival, while low temperature retards sea louse development. In contrast with the linear effects of temperature on sea louse development, salinity has a nonlinear effect on sea louse survival; values below 20 psu cause mortality, while values above 20 psu have little effect on survival. Simulations showed that sea louse population growth can be greatest in zones that are intermediate between estuarine and oceanic. In these cases population growth is not limited by the low salinities found in more estuarine sites or the low temperatures found in more oceanic sites.