White Shrimp Research Articles

A high-density linkage map and sex-determination loci in Pacific white shrimp (Litopenaeus vannamei)

BackgroundExpansion of genomic resources for the Pacific white shrimp (Litopenaeus vannamei), such as the construction of dense genetic linkage maps, is crucial for the application of genomic tools in order to improve economically relevant traits. Sexual dimorphism exists in Pacific white shrimp, and the mapping of the sex-determination region in this species may help in future reproductive applications. We have constructed male, female, and sex-averaged high-density genetic maps using a 50 K single-nucleotide polymorphism (SNP) array, followed by a genome-wide association study (GWAS) to identify genomic regions associated with sex in white shrimp.ResultsThe genetic map yielded 15,256 SNPs assigned to 44 linkage groups (LG). The lengths of the male, female, and sex-averaged maps were 5,741.36, 5,461.20 and 5,525.26 cM, respectively. LG18 was found to be the largest for both sexes, whereas LG44 was the shortest for males and LG31 for females. A sex-determining region was found in LG31 with 21 statistically significant SNPs. The most important SNP was previously identified as a sex-linked marker and was able to identify 99% of the males and 88% of the females. Although other significant markers had a lower ability to determine sex, putative genes were intercepted or close to them. The oplophorus-luciferin 2-monooxygenase, serine/arginine repetitive matrix protein and spermine oxidase genes were identified as candidates with possible participation in important processes of sexual differentiation in shrimp.ConclusionsOur results provide novel genomic resources for shrimp, including a high-density linkage map and new insights into the sex-determining region in L. vannamei, which may be usefulfor future genetics and reproduction applications.

Impact of some environmental factors on the temporal variability of pink and white shrimps postlarvae in Terminos Lagoon, Southern Gulf of Mexico

Impact of some environmental factors on the temporal variability of pink and white shrimps postlarvae in Terminos Lagoon, Southern Gulf of Mexico

Wheat bran addition methods in Pacific white shrimp (Litopenaeus vannamei) biofloc systems

Incorporating non-starch polysaccharides (NSP) as a slowly degradable carbohydrate source in pelleted feed can simplify biofloc system management, compared to external carbon addition. NSP-containing ingredients like wheat bran synchronizes carbon input with the system organic matter dynamics compared to simple sugars. This study evaluated the effect of two methods of addition of an NSP-rich carbon source, wheat bran, to a Pacific white shrimp (Litopenaeus vannamei) biofloc system; supplementation via feed (wheat bran diet; WBdiet) and direct addition to the water (CONdiet+WB). The amount and composition of the total nutrient input to each mesocosm of the treatments was the same. A digestibility and a growth experiment were carried out separately for 35 and 42 days, respectively. The nutrient digestibility was overall lower in shrimp fed the WBdiet compared to the CONdiet, but without an effect on shrimp final weight, production, and survival. When comparing the methods of addition, neither of the approaches altered the shrimp nutritional quality. As expected, a difference in faecal C:N ratio was observed; 21 vs. 17 for WBdiet and CONdiet, respectively. The difference in faeces composition did not affect biofloc quantity, quality, and chlorophyll-a concentrations, and resulted in comparable water quality and microbial activity. Our study concluded that both NSP-addition methods, either via feed or via the water, were equally effective. When compared to the traditional addition of carbohydrate to the water, supplementing NSP-containing carbon sources via the feed can be a more efficient approach in terms of labour and feeding management practices.

Novel indigenous probiotic isolated from the healthy Pacific white shrimp Litopenaeus vannamei intestine in differing stages based on metagenomic and screening approaches

The healthy intestinal microbiota of shrimp can be used as an indicator sustainable shrimp production. In this study, the integrated of metagenomic and screening probiotic approach from healthy Litopenaeus vannamei intestines in differing stages was studied to find novel indigenous probiotics. The microbiota from intestine of naupli, post larva (PL-10), juvenile (40 days), and adult (80 days) of Pacific white shrimp were characterized using a high-quality sequence of V3–V4 of 16S rRNA gene as the hypervariable region. The classifiable sequence number was detected in 54 phyla. Several core intestine bacteria, 35 of these 557 genera, have a prevalence >10 sequences across all samples. We found microbiota were different taxa in the difference stages, such as Proteobacteria, Firmicutes, and Bacteriodetes. The top 10 most abundant genera were Vibrio, Pseudoalteromonas, Spingomonas, Marinibacterium, Klebsiella, Alteromonas, Aestuaribacter, Shimia, Stenotrophomonas, and Ruegeria. Microbiota profiling based on a metagenomic approach was integrated with screening assessment for pathogenicity, antagonistic activity with Vibrio parahaemolyticus Vp5, antibiotic resistance, and digestive enzyme activities. As their assessment activity, several screened culturable bacteria were 19 of these 84 isolates. Three isolates with high activities (P < 0.05) found as novel indigenous probiotics were Shewanella algae A1, Shewanella algae A3, and Vibrio diabolicus UB3. Integrating metagenomic and screening methods was a new signature for the isolating novel indigenous probiotics in Pacific white shrimp.

A Chelex-100-based rapid DNA extraction method and its application in the detection of shrimp pathogens

BackgroundThe Pacific white shrimp is one of the world’s most economically significant aquatic species, being one of the top three species cultured globally. However, the increasing incidence of diseases such as acute hepatopancreatic necrosis disease and hepatopancreatic microsporidia has led to a serious decline in shrimp production and severe economic losses. With the increasing demand for pathogen detection in shrimp farms, rapid DNA extraction technology has become more sophisticated. In this study, a rapid and crude method of extracting genomic DNA from shrimp muscle and hepatopancreas using Chelex-100 was established. ResultsDNA was successfully extracted from muscle and hepatopancreatic tissues using both the Chelex-100 method and commercial kits. The internal reference genes of shrimp were successfully amplified via PCR and real-time PCR using the obtained DNA samples. Moreover, a field assay was successfully conducted using real-time PCR and real-time enzymatic recombinase amplification (real-time ERA), indicating that the quality of the DNA extracted using Chelex-100 is sufficient for use in conjunction with nucleic acid amplification to detect pathogens in shrimps. ConclusionsChelex-100 is an efficient method for extracting DNA from shrimp muscle or hepatopancreas tissues, with a short extraction time, high extraction efficiency, and simple operation, making it appropriate for use in the detection of pathogens in shrimp.How to cite: Yang H, Zhou Q, Hu J, et al. A Chelex-100-based rapid DNA extraction method and its application in the detection of shrimp pathogens. Electron J Biotechnol 2024;70. https://doi.org/10.1016/j.ejbt.2024.04.004.

Enhanced aquaculture wastewater treatment using water spinach (Ipomoea aquatica Forsskal) and exogenous compound bacteria

Bioremediation technology has been widely recognized as a sustainable treatment method for purifying aquaculture wastewater. We established two types of ecological floating beds, one with water spinach (WS) only and another with water spinach combined with exogenous compound bacteria (WS-ECB) for the treatment of the Pacific white shrimp aquaculture wastewater of low-salinity. The exogenous compound bacteria used in this study was composed of Rhodopseudomonas palustris and Bacillus subtilis in a certain proportion. Microbial community dynamics were analyzed by using high-throughput sequencing of 16S rRNA and water quality was determined. Both two treatments were effective in the remediation of aquaculture wastewater. The removal efficiencies of CODMn, TN and TP in the WS group were 34.33 %, 66.54 % and 73.01 %, respectively, and the removal efficiency of NH4+ in the WS-ECB group was 93.79 %. Furthermore, the addition of water spinach and exogenous compound bacteria increased the abundance of some bacteria that are involved in regulating water quality and altered the succession of microbial communities. The microbial communities were shaped by both stochastic processes (including limited dispersal) and deterministic processes (including environmental conditions and biotic interactions). Importantly, stochastic processes dominated the assembly of both water and rhizosphere microbial communities in different treatments, while deterministic processes contributed more to the rhizosphere microbial community in the WS-ECB than in the WS. Overall, our study emphasizes that plant and microbial remediation was a potential and effective approach to remove the nutrients of water, and clarifies the bacterial community dynamics and assembly mechanisms during aquaculture wastewater treatment processes.

Dietary lipid supplementation alleviated the impacts of polystyrene nanoplastic exposure in Litopenaeus vannamei

The widespread occurrence of nanoplastic (NP) pollution in the environment is a growing concern, and its presence poses a potential threat to cultured aquatic animals. Previously, we found that NPs can significantly affect the lipid metabolism of shrimp. However, relevant reports about the effects of increasing dietary lipid levels on NP toxicity are lacking. Therefore, we explored the effects of dietary supplementation with different lipid levels on the growth and lipid metabolism of Pacific white shrimp (Litopenaeus vannamei). We cultured L. vannamei at three dietary lipid levels (3 %, 6 %, and 9 %) and three NP concentrations (0, 1, and 3 mg/L) for 2 months. We evaluated the effects of lipid levels on growth indexes, hepatopancreas morphological structure, lipid metabolism-related enzyme activity, and gene expression of the shrimp. The results showed that as lipid intake increased, the survival rate, body weight growth rate, and hepatosomatic ratio of the shrimp increased while the feed conversion rate decreased. Additionally, the crude protein and crude lipid contents increased, whereas the moisture and ash contents did not change much. We found that the morphological structure of the hepatopancreas was seriously damaged in the 3 mg/L NPs and 3 % dietary lipid group. Finally, lipid metabolism-related enzyme activities and gene expression levels increased with increased dietary lipid levels. Together, these results suggest that increasing dietary lipid content can improve shrimp growth and alleviate lipid metabolism disorders caused by NPs. This study is the first to show that nutrition regulation can alleviate the toxicity of NPs, and it provides a theoretical basis for the green and healthy culture of L. vannamei.

Effects of probiotic supplementary bioflocs (Rhodospirillum rubrum, Bacillus subtilis, Providencia rettgeri) on growth, immunity, and water quality in cultures of Pacific white shrimp (Litopenaeus vannamei)

Biofloc technology is a promising strategy for the super-intensive cultivation of Pacific white shrimp (Litopenaeus vannamei). However, conventional bioflocs originating from pre-existing systems have shown to be inferior to bioflocs with constant probiotic supplementation regarding the stability in yield. Hence we compared bioflocs supplemented with Rhodospirillum rubrum (RR), Bacillus subtilis (BS), and Providencia rettgeri (PR) to the clear water system (CT), in terms of growth performances, immune status, nitrogen substances, and Vibrio populations in cultures of L. vannamei together with microbial profiles in both the midgut and bioflocs. Our findings exhibited increased average daily gain (ADG) and protein efficiency ratio (PER) among shrimp reared in BS and PR while BS also reduced feed conversion ratio (FCR). Gene expression analyses of growth-related markers revealed an upregulation of amylase and peptide transporter 1 in shrimp of PR treatment, whilst the changes did not outperform the BS supplement in growth promotion. Furthermore, PR treatment was found to enhance the expression of immune-related genes toll-like receptor, prophenoloxidase (proPO), and heat shock protein 70 (hsp70). All biofloc treatments effectively reduced NO2-N level and mitigated Vibrio parahaemolyticus proliferation, particularly in the BS and PR groups. The redundant analysis illustrated shrimp growth closely associated with improved water quality instead of the expression of genes participating in digestion, absorption, or immunity. Moreover, microflora sequencing exhibited the supplemental probiotics altered microbial communities in bioflocs and gut, whereas they did not dominate in either environment. In spite of the discrepancies in microbial composition between bioflocs and midgut of shrimp, BS and PR treatments enriched Rhodobacteraceae populations in both environments. In summary, B. subtilis and P. rettgeri supplementary bioflocs promote L. vannamei growth through nutritional supplementation and water environment optimization. Supplementation of P. rettgeri will simultaneously enhance immune responses and stress resistance of L. vannamei via activating proPO cascade and upregulating hsp70. Given the apparent benefits of heterotrophic probiotic supplementary bioflocs, it is imperative to investigate more microbial species or their combinations that can stimulate bioflocs to produce more nutrients.

Evaluation of feeding table optimizations in Pacific white shrimp nursery biofloc systems

A 45-day experiment was conducted to optimize feeding rates in the nursery phase of Pacific white shrimp reared in biofloc systems (BFT). Four treatments were evaluated in quadruplicate, according to the Van Wyk table: maximum feeding rate; minimum feeding rate; minimum feeding rate minus 10%; and maximum feeding rate plus 10%. Post-larvae (0.08 ± 0.00 g) were cultured at the density of 2,000 shrimp·m-3, and water quality, solids production, and productive performance were all monitored. No significant difference was observed in final mean weight (1.47 ± 0.17 g), productivity (2.34 ± 0.20 kg·m-3) and survival (85.29 ± 5.44%) among treatments, but feed conversion ratio was significantly lower in the minimum feeding rate and minimum feeding rate minus 10% treatments, indicating efficient feed conversion without compromising growth. These treatments also resulted in lower values of toxic nitrogen compounds and total suspended solids, suggesting a positive impact on water quality. Although these rates proved suitable, continuous adjustments are needed owing to variations in the BFT system. This study provides guidelines for optimizing feeding management in superintensive BFT nursery systems.

Comparative transcriptome analysis provides a glance into the regulatory of insulin-like peptide 1 gene in the Pacific white shrimp Litopenaeus vannamei

Insulin-like peptides (ILPs) have been reported to exert significant and diverse regulatory effects through the insulin signaling pathway in invertebrates. However, there is a large research gap in the functional analysis of ILP genes in crustaceans. In this study, we combined RNA interference (RNAi) technology with transcriptome sequencing to investigate the regulatory effects of the ILP1 gene in the Pacific white shrimp Litopenaeus vannamei. After two weeks of continuous RNAi of LvILP1, the shrimp in the dsLvILP1 group exhibited reduced body length gain, weight gain, molting rate, and hemolymph glucose concentration compared to the control dsEGFP group, indicating that knockdown of LvILP1 slowed shrimp growth, molting, and metabolism. Comparative transcriptome analysis of three tissues revealed that knockdown of LvILP1 inhibited muscle growth and development by modulating the mTOR and MAPK signaling pathways, and prevented the renewal of epidermal tissue through the Hippo signaling pathway. Meanwhile, it also suppressed certain growth signals in the hepatopancreas, such as juvenile hormone (JH) synthesis and 20-hydroxyecdysteroid (20E) signal activation. Additionally, it promoted the conversion pathway of some sugars into amino acid metabolism instead of energy metabolism after glycolysis in the hepatopancreas. Interestingly, knockdown of LvILP1 also affected carbohydrate metabolism by regulating the intracellular and extracellular transport of glucose and trehalose, as well as regulating the expression levels of key metabolic genes in three shrimp tissues. This disruption led to a decrease in blood glucose levels and suppressed energy production, ultimately providing less energy for shrimp growth and molting. This study provides valuable insights into the underlying genetic mechanism through which ILP1 regulates glucose metabolism and growth in shrimp. It enhances our understanding of the structure and function of the insulin pathway in crustaceans and serves as an important reference for the identification of candidate genes in molecular genetic breeding of shrimp.

Study on Ferritin Gene Expression to Evaluate the Health of White Leg Shrimp (Litopenaeus vannamei) Postlarvae Due to Changes in Water Temperature, Salinity, and pH

The growth and survival of marine organisms are influenced by environmental factors such as water temperature, salinity, and pH. Unsuitable environmental conditions may negatively impact marine organisms. The white leg shrimp (Litopenaeus vannamei), a euryhaline organism highly adapted to salinity, is a valuable species for aquaculture. This study examined the effects of water temperature, salinity, and pH on the health of postlarvae L. vannamei. Stress levels within the organisms were analyzed through the expression of a biomarker gene. Ferritin was selected as the biomarker gene for analysis. The experimental animal samples used were the hepatopancreas of L. vannamei postlarvae. The analysis was performed by qRT-PCR. The results showed that the adaptation of L. vannamei postlarvae to temperature was dependent on salinity. Under low-salinity conditions (5 psu), ferritin expression increased at 25 °C and 30 °C after 48 h of exposure; however, it decreased after 72 h of exposure. Under normal salinity conditions (27 psu), ferritin expression increased from 24 h to 72 h at water temperatures of 25 °C and 30 °C. These results indicate that low-salinity conditions may enable L. vannamei postlarvae to rapidly adapt to high temperatures. In conclusion, L. vannamei postlarvae adapt more efficiently to high temperatures under low-salinity conditions than that under high-salinity conditions. The results of this study could beneficially impact L. vannamei farming.

Carbohydrate structural complexity modulates the formation, composition and functionality of microbial flocs and its impact on gut microbiota and growth of Pacific white shrimp

The addition of carbohydrate into the culture water to facilitate the growth of heterotrophic bacteria is a common practice in shrimp grow out culture. The present study aimed to evaluate the effect of carbohydrate structural complexity on the formation, composition and functionality of microbial flocs, and how it impacts the gut microbiome and growth of Pacific white shrimp (Litopenaeus vannamei). Pacific white shrimp juveniles (1.07 ± 0.01 g) were randomly distributed in 12 indoor fiber tanks (50 cm × 50 cm × 100 cm) and maintained for 30 days at stocking density 107 ind.m−3 (20 ind per tank). Three different carbohydrate sources were added according to the treatments, that is dextrose (Dx) representing simple carbohydrate, potato starch (St) representing starch polysaccharide, and cellulose (Cl) representing complex non-starch polysaccharide. Settleable solids level and particle size of microbial flocs in Dx treatment were consistently higher than those of St and Cl treatments (P < 0.05). Amino acids concentrations were not significantly different amongst the treatments (P > 0.05), however essential amino acid index relative to shrimp requirement was the lowest in the Dx treatment (P < 0.05). Shannon diversity index level in the microbial flocs with Cl as the carbohydrate sources was higher compared to Dx and St. T6SS2 and ExsA gene expressions in the co-culture of Vibrio parahaemolyticus and the microbial floc suspension was highly upregulated in Dx treatment. Accordingly, differences in the shrimp gut microbiome was also observed amongst the treatments. The highest growth performance was demonstrated by the shrimp cultured with cellulose as the carbohydrate source. In conclusion, carbohydrate structural complexity could significantly affect the characteristics of microbial flocs suspended in the culture water and could ultimately affect the shrimp growth performance.

A Negative Regulatory Feedback Loop within the JAK-STAT Pathway Mediated by the Protein Tyrosine Phosphatase DUSP14 in Shrimp.

The JAK-STAT pathway is a central communication node for various biological processes. Its activation is characterized by phosphorylation and nuclear translocation of the transcription factor STAT. The regulatory balance of JAK-STAT signaling is important for maintenance of immune homeostasis. Protein tyrosine phosphatases (PTPs) induce dephosphorylation of tyrosine residues in intracellular proteins and generally function as negative regulators in cell signaling. However, the roles of PTPs in JAK-STAT signaling, especially in invertebrates, remain largely unknown. Pacific white shrimp Penaeus vannamei is currently an important model for studying invertebrate immunity. This study identified a novel member of the dual-specificity phosphatase (DUSP) subclass of the PTP superfamily in P. vannamei, named PvDUSP14. By interacting with and dephosphorylating STAT, PvDUSP14 inhibits the excessive activation of the JAK-STAT pathway, and silencing of PvDUSP14 significantly enhances humoral and cellular immunity in shrimp. The promoter of PvDUSP14 contains a STAT-binding motif and can be directly activated by STAT, suggesting that PvDUSP14 is a regulatory target gene of the JAK-STAT pathway and mediates a negative feedback regulatory loop. This feedback loop plays a role in maintaining homeostasis of JAK-STAT signaling and is involved in antibacterial and antiviral immune responses in shrimp. Therefore, the current study revealed a novel inhibitory mechanism of JAK-STAT signaling, which is of significance for studying the regulatory mechanisms of immune homeostasis in invertebrates.

A Review: Microbes and Their Effect on Growth Performance of Litopenaeus vannamei (White Leg Shrimps) during Culture in Biofloc Technology System.

In the modern era of Aquaculture, biofloc technology (BFT) systems have attained crucial attention. This technology is used to reduce water renewal with the removal of nitrogen and to provide additional feed. In BFT, microorganisms play a crucial role due to their complex metabolic properties. Pathogens can be controlled through multiple mechanisms using probiotics, which can promote host development and enhance the quality of the culture environment. During culturing in a biofloc technology system, the supplementation of microalgae and its accompanying bacteria plays a beneficial role in reducing nitrogenous compounds. This enhances water quality and creates favorable environmental conditions for specific bacterial groups, while simultaneously reducing the dependency on carbon sources with higher content. The fluctuations in the bacterial communities of the intestine are closely associated with the severity of diseases related to shrimp and are used to evaluate the health status of shrimp. Overall, we will review the microbes associated with shrimp culture in BFT and their effects on shrimp growth. We will also examine the microbial impacts on the growth performance of L. vannamei in BFT, as well as the close relationship between probiotics and the intestinal microbes of L. vannamei.

Profiling of microbiome biodiversity and structure associated with the gastrointestinal tract of Pacific white shrimp (Penaeus vannamei) using high-throughput sequencing

Profiling of microbiome biodiversity and structure associated with the gastrointestinal tract of Pacific white shrimp (Penaeus vannamei) using high-throughput sequencing

Effects of Tannin Supplementation in Diet on the Resistance to Ammonia Stress of Pacific White Shrimp Litopenaeus vannamei

Tannin (TA), as a natural phenolic compound with strong antioxidant activity, has been used as a feed additive for various animals. In this study, we fed a diet containing 800 mg/kg of tannin on Litopenaeus vannamei for 56 days and then subjected to acute ammonia stress for 48 hr to investigate the effect of dietary tannin on the ammonia stress response of L. vannamei through transcriptomic and metabolomic analysis. The transcriptome analysis indicated that ammonia stress-induced differential expression of 4,185 genes, while tannin-fed shrimp only had 964 differentially expressed genes. Compared with the TA_0 group, 59 pathways were significantly altered, and the pathways of “starch and sucrose metabolism,” “retinol metabolism,” “arachidonic acid metabolism,” “lysosome,” and “amino sugar and nucleotide sugar metabolism” were highly enriched in the TS_0 group. Compared with the TS_0 group, six pathways were significantly altered, and the pathways of “dilated cardiomyopathy,” “complement and coagulation cascades,” “cardiac muscle contraction,” “fructose and mannose metabolism,” “cGMP-PKG signaling pathway,” and “beta-alanine metabolism” were significantly enriched in the TS_800 group. Metabolomic analysis showed that a total of 107 differential metabolites (DMs) were identified in the TS_0 vs. TA_0 group, while 75 DMs were identified in the TS_800 vs. TS_0 group. Based on KEGG annotation, it was found that a large amount of DM was significantly enriched in amino acid metabolism pathways in the TS_0 group, including “arginine and proline metabolism,” “alanine, aspartic acid, and glutamic acid metabolism,” “β-Alanine metabolism and tyrosine metabolism” indicated that tannins affect the metabolism of amino acids. The integration of DEGs and DMs indicates that dietary tannins highly alter the digestion and absorption functions of proteins, as well as the biosynthesis and metabolism of amino acids. This study provides new insights into the adaptation of Pacific white shrimp to ammonia stress and the addition of tannins to feed to enhance immune function.

Effect of an Ipomoea aquatica Floating Raft on the Water Quality, Antioxidant System, Non-Specific Immune Responses, and Microbial Diversity of Penaeus vannamei in an Aquaculture System

Pacific white shrimp (Penaeus vannamei) is one of the main shrimp species cultivated around the world. Despite its high yields and easy handling, water pollution from intensive shrimp cultivation remains a serious problem in China. In this study, a compound aquaculture model of P. vannamei and water spinach (Ipomoea aquatica) was used to investigate the effect of a water spinach floating raft on water quality, antioxidants, non-specific immune response, growth performance, and microbial diversity. The experimental design of this study consisted of two groups with three replicates for each, i.e., control group: aquatic monoculture (AM) system with only P. vannamei; treatment group: P. vannamei-I. aquatica raft aquaponics (AP) system with a 50% cover ratio with a water spinach floating raft. The experiment lasted for seven weeks. The results show that the concentrations of total phosphorus (TP), total nitrogen (TN), nitrate nitrogen (NO3−-N), ammonia nitrogen (NH4+-N), nitrite nitrogen (NO2−-N), and active phosphorus (AP) in the AM group were higher than those in the AP group at different sampling times. The water quality index of the AP group was better than that of the AM group, indicating that water spinach can remove the nutrients from aquaculture water bodies. The average daily gain and survival rate of shrimp in the AP group were higher than those in the AM group. The total antioxidant capacity (T-AOC), catalase (CAT), superoxide dismutase (SOD), malondialdehyde (MDA), and acid phosphatase (ACP) in the AP group were better than those in the AM group. The Shannon–Wiener and Simpson indices of the gut, water, and sediment of the AP system were significantly higher than those in the AM system, which implied a higher abundance of microorganisms in the AP system. These results demonstrate that the application of a water spinach floating raft in aquaponics can not only improve the water quality, but also improve the growth performance, antioxidant system, and non-specific immune responses of Pacific white shrimp, while increasing the abundance of microorganisms in the aquaculture system and improving the ecological benefits in terms of the expenditure.

Evaluation of combined disinfection methods of infectious myonecrosis virus (IMNV) in seawater using Pacific white shrimp (Penaeus vannamei)

The global spread of infectious myonecrosis virus (IMNV) poses a serious threat to the shrimp aquaculture industry and urgent actions are needed to control its transmission and prevalence. Aquaculture water serves as an important route of IMN transmission, and disinfection of aquaculture water is crucial to ensure the health and stable production of shrimp. In this study, we introduced the purified IMNV into seawater and then subjected the seawater to different disinfection treatments (PMS, PMS + PVP-I and ClO2 + PVP-I) before culturing shrimp. By performing RT-qPCR tests on both the seawater and Pacific white shrimp (Penaeus vannamei) samples, we evaluated the effectiveness of the different disinfection methods in eradicating IMNV from the seawater. The results showed that peroxymonosulfate (PMS) could effectively reduce the viral load of IMNV in seawater samples. The combined disinfection approach (10 ppm) of PMS disinfection (combined with povidone‑iodine) followed by a standing time of at least 2 days, or 10 ppm chlorine dioxide disinfection (combined with povidone‑iodine) followed by a standing time of at least 4 days, were found to be successful in the efficient disinfection of IMNV. This research provides a method to effectively remove IMNV from marine aquaculture water, thereby contributing to reducing the risk of IMN disease transmission and providing a sound basis for the sustainable and healthy development of the shrimp aquaculture industry.

Circularity Assessment in Aquaculture: The Case of Integrated Multi-Trophic Aquaculture (IMTA) Systems

Aquaculture is a strategic sector that aims to meet the increased demands for healthy food for current and future populations. However, this progression needs to be sustainable, which can potentially be achieved by the implementation of circular practices. Integrated multi-trophic aquaculture (IMTA) systems promote the incorporation of circular principles. Nevertheless, the lack of harmonized definitions and standards impedes the quantification of these circular attributes. This study aims to explore the potential principles embedded in IMTA and the existing alternatives to quantify circularity. Two basic pillars (nutrient management and resource use efficiency) were identified as the most relevant circularity attributes for IMTA systems and were quantified through aquaculture-specific indicators. Bioremediation indicators, together with the efficiency indicators in terms of feed, water, energy, and infrastructure materials used, were selected to evaluate the circularity performance of four IMTA trials in three aquaculture facilities in Ireland, Brazil, and South Africa. Salmon, white shrimp, tilapia, abalone, and sea urchins were studied and cultivated together in various combinations with several low-trophic species in these IMTA trials to evaluate the improvement in circularity compared with corresponding monoculture conditions. The results showed an increase in circularity of up to 90% in terms of water recirculation, as well as bioremediation, which was improved by 80%–90%, providing evidence for the potential role of IMTA in the circularity transition.

Gene structure, expression and function analysis of the MyoD gene in the Pacific white shrimp Litopenaeus vannamei

The Pacific white shrimp Litopenaeus vannamei is a representative species of decapod crustacean and an economically important marine aquaculture species worldwide. However, research on the genes involved in muscle growth and development in shrimp is still lacking. MyoD is recognized as a crucial regulator of myogenesis and plays an essential role in muscle growth and differentiation in various animals. Nonetheless, little information is available concerning the function of this gene among crustaceans. In this study, we identified a sequence of the MyoD gene (LvMyoD) with a conserved bHLH domain in the L. vannamei genome. Phylogenetic analysis revealed that both the overall protein sequence and specific functional sites of LvMyoD are highly conserved with those of other crustacean species and that they are evolutionarily closely related to vertebrate MyoD and Myf5. LvMyoD expression is initially high during early muscle development in shrimp and gradually decreases after 40 days post-larval development. In adults, the muscle-specific expression of LvMyoD was confirmed through RT–qPCR analysis. Knockdown of LvMyoD inhibited the growth of the shrimp in body length and weight. Histological observation and transcriptome sequencing of muscle samples after RNA interference (RNAi) revealed nuclear agglutination and looseness in muscle fibers. Additionally, we observed significant effects on the expression of genes involved in heat shock proteins, myosins, actins, protein synthesis, and glucose metabolism. These findings suggest that LvMyoD plays a critical role in regulating muscle protein synthesis and muscle cell differentiation. Overall, this study highlights the involvement of LvMyoD in myogenesis and muscle growth, suggesting that it is a potentially important regulatory target for shrimp breeding efforts.