Web Structure Research Articles

DATA AND WEB MINING

Data and web mining involves the use of data mining techniques to extract information from the web in order to gain insights into online behavior, customer preferences, and trends. The process requires data preprocessing to clean and prepare the data for analysis, and pattern recognition to identify relationships and patterns within the data. The benefits of data and web mining include improved decision-making and business growth, while challenges include the large volume of data and ensuring data quality. Web mining can be divided into three main categories: web content mining, web structure mining, and web usage mining. Web content mining involves extracting information from the content of web pages, such as text, images, and videos. Web structure mining involves analyzing the links between web pages to identify patterns and relationships. Web usage mining involves analyzing user behavior on the web, such as clickstream data and session logs, to extract useful information. KEYWORDS: data mining, web mining, information extraction, data preprocessing, pattern recognition, online behavior, customer preferences,

A meta-analysis suggests climate change shifts structure of regional communities of soil invertebrates

Soil animals perform a range of essential ecosystem functions and can modify the effects of global change on terrestrial ecosystems. We evaluated responses of six major groups of soil animals (Acari (all groups), Oribatida, Collembola, Insecta, Nematoda, and Oligochaeta) to controlled changes in air temperature, precipitation level or carbon dioxide concentration by using random-effects modelling and mixed-effects meta-regression modelling. Along with the three global change factors, sixteen local climatic characteristics (such as mean annual temperature, Köppen climate classification, vegetation type) were tested. Overall, 86 studies comprising 236 observations with mean duration of 51 months were selected as relevant for the analysis. Quantitative links between global change factors, local climate characteristics and changes in abundance of four taxonomic groups of soil animals were revealed. Warming and precipitation level were associated most strongly with population dynamics of soil invertebrates compared to elevated atmospheric CO2. Each 1 °C increase in air temperature was correlated with a mean of 12.5% (95% CI: 2.5%–22.6%) increase in Acari abundance, while populations of Collembola were declined by 9.6% (95% CI: −17.8% to −1.4%). Meanwhile, each 10% increase in precipitation level was correlated with the increase in the abundance of Nematoda by 1.4% (95% CI: −7.6% to 10.4%) and Oligochaeta by 34.7% (95% CI: 8.1%–61.2%). Considering IPCC estimates (SSP3-7.0 Scenario) of an average climate warming by 3.6 °C and a substantial variation in local precipitation levels (up to ±20%) by the end of the 21st century, strong local changes in the structure of detrital food webs are predicted by meta-regression models. In regions with decreased precipitation, the formation of soil food webs promoting carbon mineralization may be expected, while in regions with increased precipitation, the changes in detrital food web structure can contribute to the accumulation of carbon in the soil.

Vertical, spatial, size, and taxonomic variations in stable isotopes (δ13C and δ15N) of zooplankton and other pelagic organisms in the western North Pacific

Stable isotopes (δ13C and δ15N) of zooplankton and other marine organisms are useful for evaluating trophic levels and the food web structure of marine ecosystems. Further, taxonomic variations and regressions between δ15N and δ13C can provide details of regional differences in the food web structure. Despite their ecological importance, information on the taxonomic differences in the stable isotopes of various pelagic biota and vertical, latitudinal, and size variations in the stable isotopes of the mesozooplankton are scarce in the western North Pacific. In this study, we compared regional differences in the taxonomic variations of the stable isotopes of the all pelagic organisms collected by gillnets and various plankton nets in the subarctic and transitional domains (37–44°N) of the western North Pacific during spring. Additionally, we evaluated the vertical, size, and latitudinal variations in the stable isotopes of mesozooplankton in the western North Pacific. Regressions between δ15N and δ13C were highly significant for the subarctic and transitional domains, while they varied significantly between the two regions (P < 0.0001, ANCOVA). These regional differences in the stable isotopes were characterised by the high δ15N and low δ13C values in the subarctic region, whereas the opposites trend was observed in the transitional domains. Vertical observations from the sea surface to a depth of 3000 m at five stations (29°, 31°, 33°, 37°, and 41°N) showed that there were no significant changes in the δ13C stable isotope of mesozooplankton with depth across the stations. However, for δ15N, the significance of regressions increased with increasing depths at the subtropical stations (29°, 31°, and 33°N), while no significant trends with depth were observed for the subarctic and transitional domain stations (37°, 41°N). The dominance of interzonal copepods (e.g., Neocalanus spp.) in the mesozooplankton biomass in the subarctic and transitional region may mask the vertical changes in δ15N values in that region. Further, δ13C varied neither with size nor latitude. In contrast, δ15N showed clear size and latitudinal patterns. Thus, δ15N values increased with increasing zooplankton size (112 μm < 407 μm < 925 μm), and significant regressions increased with increasing latitude for all three size classes (P < 0.001). Subsequent ANCOVA revealed that the regression did not vary with organism size. Thus, the changing latitudinal patterns in δ15N values (higher for high latitude) had much greater effects than the size differences for mesozooplankton.

“It's my home, not a war zone”: Mobilizing a multitude to demilitarize the Texas Rio Grande Valley

AbstractOn 25 January 2017 then‐President Trump issued Executive Order 13,767 “Border Security and Immigration Enforcement Improvement” which designated dozens of new miles of barrier construction in Hidalgo County and surrounding municipalities in the Texas Rio Grande Valley (RGV). In response, a multitude of political organizations known as the No Border Wall Coalition (NBWC) mobilized in an effort to demilitarize their communities. Our analysis focuses on three organizations within the NBWC—the RGV Sierra Club, Texas Civil Rights Project, and the South Texas Human Rights Center. These organizations, and others, are calling for an end to encroaching physical walls, a proliferation of surveillance technologies, and an expansion of military‐police enforcement personnel. Using a triangulation of qualitative methods, we identify three campaigns of resistance used by the NBWC: protecting the environment, defending landowner rights, and preventing migrant deaths. Our analysis reveals how each of these campaigns helps bring together a diverse set of political organizations and interests into a collective web and narrative structure, and underscores the common formation of what we designate as a multitude. We show how this multitude transforms RGV communities “from below,” as the NBWC reckons with environmental degradation, the suspension of civil and political rights, and humanitarian harms.

Fresh perspectives on the River Continuum Concept require trophic ecology approaches focussed on food web structure and energy mobilisation routes.

Stream-dwelling communities are expected to show a gradual replacement of the dominant feeding types following the type of resources found along the river continuum. Yet, the underlying longitudinal gradients in food web structure and energy flow-paths remain poorly understood. Here, I synthesise novel research on the River Continuum Concept (RCC) and identify promising areas for future research linked to longitudinal changes in food-chain length and energy mobilisation routes. For example, feeding links and connectance should reach maximum values in mid-order rivers and then decrease to river mouths following uncovered longitudinal diversity patterns. Regarding energy mobilisation routes, a gradual replacement in the food web fuelling between allochthonous (leaf litter) and autochthonous (periphyton) resources should be expected. Beyond longitudinal changes in primary basal resource to consumer paths, other allochthonous (e.g. riparian arthropod inputs) and autochthonous (e.g. fish prey) inputs subsidising higher level consumers may show longitudinal changes, that is, terrestrial invertebrates decreasing but piscivory increasing downstream. However, the role of these inputs, that can alter predator niche variation and have indirect community-based effects, on both food web structure and energy flow-paths along the river continuum is not clear yet. Incorporating energy mobilisation and food web structure into RCC principles is necessary for a broad understanding of ecosystem functioning and trophic diversity in riverine systems, driving the emergence of novel insights. How function and structure of riverine food webs adapt to longitudinal changes in physical and biological environments represent a challenge for next generation of stream ecologists.

Generalist invasion in a complex lake food web

AbstractInvasive species constitute a threat not only to native populations but also to the structure and functioning of entire food webs. Despite being considered as a global problem, only a small number of studies have quantitatively predicted the food web‐level consequences of invasions. Here, we use an allometric trophic network model parameterized using empirical data on species body masses and feeding interactions to predict the effects of a possible invasion of Amur sleeper (Perccottus glenii), on a well‐studied lake ecosystem. We show that the modeled establishment of Amur sleeper decreased the biomasses of top predator fishes by about 10%–19%. These reductions were largely explained by increased larval competition for food and Amur sleeper predation on fish larvae. In contrast, biomasses of less valued fish of lower trophic positions increased by about 0.4%–9% owing to reduced predation pressure by top piscivores. The predicted impact of Amur sleeper establishment on the biomasses of native fish species vastly exceeded the impacts of current‐day fishing pressures.

Stable Isotopes (δ13C and δ15N) and Trace Elements of Invertebrates and Fish from the Coastal Waters of Ha Tinh Province, Central Vietnam.

Stable isotope signatures (δ13C, δ15N) and trace elements (TEs) were analyzed from invertebrates and fish to assess food web structure and the biomagnification or biodilution of Cu, Pb, Cd, Zn, Mn, Cr, Hg and As in coastal waters of Ha Tinh Province, Central Vietnam. δ13C and δ15N values of purported food sources (sediments, phytoplankton, macroalgae, and zooplankton) ranged from -21.24 ± 0.39‰ to -16.72 ± 1.02‰ and from 3.02 ± 0.70‰ to 7.30 ± 0.42‰, respectively. The δ13C and δ15N values in invertebrates and fish ranged from -19.75 ± 0.10‰ to -18.68 ± 0.40‰, and from 7.02 ± 1.21‰ to 9.10 ± 0.29‰. The δ15N values showed that the food web structure could be divided into four trophic levels. The benthic invertebrates had significantly higher concentrations of Cu, Pb, Zn, Cd and As. Hg concentrations tended to accumulate higher in the crabs and fish. The biodilution of Pb, Cd, Zn, Cr was observed throughout the food web, whereas biomagnification was observed for Cr, Mn, and As in bivalves; Cd and Zn in gastropods; Pb, Cd, Zn, and As in crabs; Cd in prawns and Hg in fish.

Aquatic invertebrate diversity profiling in heterogeneous wetland habitats by environmental DNA metabarcoding

Invertebrates play vital roles in maintaining biodiversity and food web structure. However, it is difficult to identify invertebrate taxa across complex habitats due to the limitation of traditional morphology. In subtropical wetlands, environmental DNA (eDNA) metabarcoding was used to characterize the composition and diversity of aquatic invertebrates and analyze the environmental impacts on invertebrate community structure. According to the relative abundance (%) of invertebrate OTU richness, 30 sampling sites in wetlands were clustered into six zones, which exhibited significant spatial (i.e., wetland type-specific) differences in taxonomic composition. The relative OTU abundance (%) at the phylum level showed that Cnidaria (48.5%) > Porifera (19.4%) > Rotifera (11.0%) > Mollusca (9.2%) > Annelida (5.3 ± 2.8%) > others (less than 2.2%). Of the five alpha diversity indexes, ‘Simpson’ was the most effective index to distinguish the spatial differences in invertebrate diversity, and the class-level alpha diversity showed higher recognition than other taxonomic levels. The class-level biomarkers that could indicate the habitat-specific composition of local invertebrates were Insecta, Cnidaria, Hydrozoa, and Gastropoda in the inflow river; Ascidiacea and Demospongiae in the fluvial wetland; Clitellata, Gymnolaemata, and Monogononta in the lacustrine wetland; and Echinoidea in the estuarine wetland. The associations between environmental factors and invertebrate OTU richness based on redundancy analysis showed the taxon-level tendency of phylum (78.5%) > class (73.4%) > order (69.3%) > family (64.9%) > genus (61.2%). Our results demonstrated that aquatic invertebrate diversity profiling by environmental DNA metabarcoding can effectively reflect the composition, diversity and biomarkers of invertebrate communities. In the future, because of its great application potential, the eDNA technique may play an important role in biomonitoring complex water environments.

Variations in the soil micro-food web structure and its relationship with soil C and N mineralization during secondary succession of subalpine forests

The soil micro-food web is an important network of belowground trophic relationships and it participates directly and indirectly in soil ecological processes. In recent decades, the roles of the soil micro-food web in regulating ecosystem functions in grasslands and agroecosystems have received much attention. However, the variations in the soil micro-food web structure and its relationship with ecosystem functions during forest secondary succession remain unclear. In this study, we investigated how forest secondary succession affected the soil micro-food web (including soil microbes and nematodes) and soil carbon and nitrogen mineralization across a successional sequence of “grasslands – shrublands – broadleaf forests – coniferous forests” in a subalpine region of southwestern China. With forest successional development, the total soil microbial biomass and the biomass of each microbial group generally increased. The significant influences of forest succession on soil nematodes were mainly reflected in several trophic groups with high colonizer-persister values (particularly bacterivore3, herbivore5 and omnivore-predator5) that are sensitive to environmental disturbance. The increases in the connectance and nematode genus richness, diversity, and maturity index indicated an increasingly stable and complex soil micro-food web with forest succession, which was closely related to soil nutrients, particularly the soil carbon contents. Additionally, we found that the soil carbon and nitrogen mineralization rates also exhibited generally increasing trends during forest succession, which had significant positive correlations with the soil micro-food web composition and structure. The path analysis results indicated that the variances in ecosystem functions induced by forest succession were significantly determined by soil nutrients and soil microbial and nematode communities. Overall, these results suggested that forest succession enriched and stabilized the soil micro-food web and promoted ecosystem functions via the increase in soil nutrients, and the soil micro-food web played an important role in regulating ecosystem functions during forest succession.

Structure of planktonic food web in the Gulf of Gabès (Southeastern Mediterranean): potential importance of heterotrophic and mixotrophic microzooplankton

Structure of planktonic food web in the Gulf of Gabès (Southeastern Mediterranean): potential importance of heterotrophic and mixotrophic microzooplankton

Differences in food web structure and composition between new and nearby older lakes in West Greenland suggest succession trajectories driven by glacier retreat

Differences in food web structure and composition between new and nearby older lakes in West Greenland suggest succession trajectories driven by glacier retreat

Runoff from upstream changes the structure and energy flow of food web in estuary

IntroductionSediment and nutrients flow into estuary with runoff, and then influence the estuary ecosystem. Much work has been done for investigating the response of water quality and species group (eg. phytoplankton or zooplankton) to the runoff from upstream, while few research has been taken to evaluate the response of the whole ecosystem.MethodsFood webs of different seasons and regions were established based on stable isotope analysis and Bayesian mixing model. The influences of upstream runoff and sediment transport on the estuarine food webs were analyzed.ResultsFood web in estuary had highly spatial-temporal variability. The stable isotope values of organisms were higher on the northern shore than that on the southern shore. The area with high-turbidity freshwater inflow nurtured more terrestrial- organic- matter (TOM) relying species. And the contribution of TOM to food web was higher in flood season than that in non-flood season. The trophic levels of major consumers in the non-flood season were generally higher than that in the flood season. Significant differences in the average TP of species between two shores appeared during the non-flood season (P &amp;lt; 0.05). Expect for the C value, all of the topological indexes of food webs on the northern shore were higher than those on the southern shore, and they were higher in the flood period.DiscussionThe input and diffusion of sediment and nutrients carried by runoff led to the changes in the dietary structure of estuarine organisms and the decrease in trophic levels of major consumers. At the same time, flow pulse with high sediment also aggravated the spatial differences of the structure of food webs. The higher contribution of TOM to consumers increased the link density of food web on the southern shore, making it a more robust system. However, the high diversity of food sources and aquatic species made the food web more complex on the northern shore.

Interdependence between bacterial EPS and early grain coat development

AbstractBacteria are the most abundant forms of life we know on our planet, able to survive in a variety of habitats, that play an important role in mineral formation and transformation processes. Here, we present laboratory experiments in which unconsolidated quartz grains were seeded with Geobacter sulfurreducens cells and exposed to a mineral medium solution for 96 hours at temperatures of between 60°C and 120°C. Experimental data show the interdependence between extracellular polymeric substances (EPS) and the early formation of grain‐coating material. The occurrence of EPS promotes the development of web and bridging structures binding the quartz grains and creating EPS‐coated surfaces. With increasing temperature, an amorphous mineral phase grows preferentially on these surfaces suggesting that EPS can act as a template for mineral nucleation. At temperatures &gt;100°C, the order of crystallinity of the amorphous authigenic phase increases, transitioning to poorly‐ordered rosette‐like textures.

Diet and Trophic Structure of the Fish Community in a Small Sub-Tropical Lake in Central Mexico

Analyses of trophic structure and feeding habits of the fish community can provide information on the complex biotic and abiotic interactions in lake ecosystems. Based on stomach content and δ13C and δ15N stable isotope analyses, we conducted a comprehensive study of the diet of the fish community and its trophic structure in subtropical Lake Zacapu in central Mexico. Overall, there was good agreement between the results based on the diet and the isotope analysis. Fish diets consisted mainly of aquatic macroinvertebrates, which were abundant in the lake. Most species were secondary consumers and trophic generalists across the four sites and two seasons. The food web structure did not differ significantly between the sites or seasons. Our results suggest a low trophic position of native species having a wide spatial trophic niche and niche width. Trophic diet overlap was greater between native species (especially between species from the same family) than between non-native species. Our study provides new information on the trophic interactions in a subtropical lake, rich in endemic species and an important resource for human communities.

Functional vulnerability and biogeography of reef fish assemblages in the Galapagos Archipelago

The Galapagos archipelago's unique reef biodiversity and fish distribution patterns are well documented. However, reef ecosystem vulnerability to losing functional diversity and the biogeographical drivers of community functional diversity are undescribed. The functional diversity and vulnerability of coastal reef fish communities in the Galapagos were investigated using Baited Remote Underwater Stereo-Video systems (stereo-BRUVs). Relative abundance data for 41,594 individual fish belonging to 121 species was collected, 87 functional entities were identified, and functional diversity and vulnerability estimated based on five functional traits. The influence of spatial and environmental variability and human impact on functional entity composition and richness were also assessed.Galapagos reef fish communities have a high vulnerability to reduced functional diversity if species are lost due to the low redundancy and high sensitivity of reef fish functional entities. However, there may be some ecosystem resilience against species loss from species filling ecologically similar niches instead of redundant species filling the same niche. The functional trait structure and vulnerability of Galapagos reef fish assemblages reflect the known trophic structure of the marine food web. Most functional entities with resilience from redundancy include upper trophic level species with piscivorous diets. Most functional entities that are sensitive and represented by only one species include lower trophic level species. Spatial variables relating to marine environmental variation (from tropical to temperate reef ecosystems) and benthic habitat bottom incline were important predictors of reef fish functional entity distribution. Functional vulnerability may be a concern in marine ecosystems where functional diversity is low, including at higher southern latitudes and western longitudes, the cooler temperate regions and topographically simple marine habitats. Our study raises concerns about the long-term functioning of Galapagos marine ecosystems under present climate change and human management scenarios. We suggest grouping species by functional traits for consideration in the future marine management of Galapagos marine communities.

BIRD-HERPETOFAUNA INTERACTIONS IN THE USUMACINTA RIVER BASIN, MEXICO

Interspecific interactions between vertebrates of different groups are common but also complex and of great importance for community structure. In particular, predation, considered a trophic interaction, plays a significant role in food webs structure and selective effects on prey in natural ecosystems. In this paper we provide new information on the trophic relationship between birds and herpetofauna (reptiles and amphibians) in the complex and biodiverse Usumacinta river basin, through 10 observations recorded between 2012 and 2021. The observations show interactions for feeding purposes of eight bird species, including herons (Tigrisoma mexicanum), jays (Psilorhinus morio), raptors (Caracara cheriway, Pseudastur albicollis, Harpagus bidentatus, Buteo plagiatus), puffbirds (Malacoptila panamensis), and ducks (Dendrocygna autumnalis), with snakes (Coniophanes quinquevittatus), turtles (Chelydra rossignonii, Trachemys venusta), lizards (Iguana iguana, Sceloporus serrifer), crocodiles (Crocodylus moreletii), and frogs (Smilisca baudinii).

Trophic ecology of co-occurring fishes in the Sundays River Valley irrigation ponds, assessed using stable isotope and gut content analyses.

The analysis of food web structures has increased the understanding of the dynamics of organisms belonging to different trophic levels. In this study, the diet of two native species, Glossogobius callidus and Gilchristella aestuaria, was assessed in the presence of two non-native species, Oreochromis mossambicus and Gambusia affinis, in irrigation ponds, Eastern Cape Province, South Africa. The proportion of dietary items consumed and assimilated by the four fish species were inferred from gut contents and carbon and nitrogen stable isotope analysis. Stable isotope analysis revealed that both G. affinis and O. mossambicus had a larger isotopic niche size than G. callidus and G. aestuaria. Although G. callidus fed on benthic resources and G. aestuaria fed on phytoplankton, gut content analysis showed that G. callidus, O. mossambicus and G. affinis fed predominantly on benthic resources, whereas G. aestuaria fed mainly on plankton resources. Considerable niche overlap corroborates the view that resource competition is a major factor shaping the composition of the four fish species. This study highlighted the low diversity of the food web within the Sundays River Valley irrigation ponds, where food items are shared by all the small-bodied fishes.

Bioinspired Multiscale Micro-/Nanofiber Network Design Enabling Extremely Compressible, Fatigue-Resistant, and Rapidly Shape-Recoverable Cryogels.

Cryogels with extreme mechanical properties such as ultrahigh compressibility, fatigue resistance, and rapid recovery are attractive in biomedical, environmental remediation, and energy storage applications, which, however, are difficult to achieve in man-made materials. Here, inspired by the multiscale macro-/microfiber network structure of spider web, we construct an ultraelastic chitosan cryogel with interconnected hybrid micro-/nanofibers (CMNF cryogels) via freeze-induced physicochemical cross-linking. Chitosan chains are directionally assembled into high-aspect-ratio microfibers and nanofibers under shear-flow induction, which are further assembled into an interconnected three-dimensional (3D) network structure with staggered microfibers and nanofibers. In this multiscale network, nanofibers connecting the microfibers improve the stability, while microfibers improve the elasticity of the CMNF cryogels through long-range interaction. The synergy of the two-scale fibers endows the CMNF cryogel with extraordinary mechanical properties in comparison to those assembled with single-scale fibers, including its ultrahigh ultimate strain (97% strain with 50 cycles), excellent fatigue resistance (3200 compressing-releasing cycles at 60% compression strain), and rapid water-triggered shape recovery (recovering in ∼1 s). Moreover, the fibrous CMNF cryogel shows excellent functionalization capability via the rapid assembly of nanoscale building blocks for flexible electronics and environmental remediation. Our work thereby demonstrates the potential of this bioinspired strategy for designing gel materials with extreme mechanical properties.

Niche differentiation between some species of Ghanaian orb-web spiders (Araneae: Araneidae, Tetragnathidae)

The web placement and web structure of the nine most common species of orb-web spiders (Araneae: Araneidae, Tetragnathidae) coexisting in the park-like campus of the University of Ghana in Legon, Ghana, were investigated to analyse differences between their ecological niches. Various web parameters, such as: relation to habitat, height, light exposure, web size, mesh size, and web inclination, were measured. When comparing these parameters in all species pairs, the webs of each species were found to differ in at least two parameters from the web of every other species. Since the analysed web parameters are all likely to influence the number and kind of prey caught, this suggests a niche differentiation between all analysed species. Some observations were also made on the prey caught. While the prey analysis was not detailed enough to find differences between all species, there was a positive correlation between the web's mesh size and the size of the prey.

Westwards expansion of the European catfish Silurus glanis in the Douro River (Portugal)

The current study reports the first occurrence and the spread of the European catfish Silurus glanis (Family: Siluridae) in the Portuguese section of the Douro River, suggesting a potential expansion of its distribution in Portugal either via westward dispersal across international rivers and/or human-assisted introductions into new reservoirs and drainages. The European catfish has unique features (e.g., opportunistic predator, hunting, and aggregation behaviour) that make it highly suitable for establishing self-sustaining populations in new areas and likely contribute to its invasion success. The species may severely affect native prey communities and modify food web structure and ecosystem functioning. Efficient and sustainable management actions are needed to prevent further introductions in the future.