The subject of present study is the application of mesh free Lagrangian two-dimensional non-cohesive sediment transport model applied to a two-phase flow over an initially trapezoidal-shaped sediment embankment. The governing equations of the present model are the Navier-Stocks equations solved using Weakly Compressible Smoothed Particle Hydrodynamics (WCSPH) method. To simulate the movement of sediment particles, the model considers a powerful two-part technique; when the sediment phase has rigid behavior, only the force term due to shear stress in the Navier-Stokes equations is used for simulation of sediment particles’ movement. Otherwise, all the Navier-Stokes force terms are used for transport simulation of sediment particles. In the present model, the interactions between different phases are calculated automatically, even with considerable difference between the density and viscosity of phases. Validation of the model is performed using simulation of available laboratory experiments, and the comparison between computational results and experimental data shows that the model generally predicts well the flow propagation over movable beds, the induced sediment transport and bed changes, and temporal evolution of embankment breaching.