Weak Interactions Research Articles

Untangling the complex food webs of tropical rainforest streams.

Food webs depict the tangled web of trophic interactions associated with the functioning of an ecosystem. Understanding the mechanisms providing stability to these food webs is therefore vital for conservation efforts and the management of natural systems. Here, we first characterised a tropical stream meta-food web and five individual food webs using a Bayesian Hierarchical approach unifying three sources of information (gut content analysis, literature compilation and stable isotope data). With data on population-level biomass and individually measured body mass, we applied a bioenergetic model and assessed food web stability using a Lotka-Volterra system of equations. We then assessed the resilience of the system to individual species extinctions using simulations and investigated the network patterns associated with systems with higher stability. The model resulted in a stable meta-food web with 307 links among the 61 components. At the regional scale, 70% of the total energy flow occurred through a set of 10 taxa with large variation in body masses. The remaining 30% of total energy flow relied on 48 different taxa, supporting a significant dependency on a diverse community. The meta-food web was stable against individual species extinctions, with a higher resilience in food webs harbouring omnivorous fish species able to connect multiple food web compartments via weak, non-specialised interactions. Moreover, these fish species contributed largely to the spatial variation among individual food webs, suggesting that these species could operate as mobile predators connecting different streams and stabilising variability at the regional scale. Our results outline two key mechanisms of food web stability operating in tropical streams: (i) the diversity of species and body masses buffering against random and size-dependent disturbances and (ii) high regional diversity and weak omnivorous interactions of predators buffering against local stochastic variation in species composition. These mechanisms rely on high local and regional biodiversity in tropical streams, which is known to be strongly affected by human impacts. Therefore, an urgent challenge is to understand how the ongoing systematic loss of diversity jeopardises the stability of stream food webs in human-impacted landscapes.

Monodisperse nanosheet mesophases.

Self-assemblies of anisotropic colloidal particles into colloidal liquid crystals and well-defined superlattices are of great interest for hierarchical nanofabrications that are applicable for various functional materials. Inorganic nanosheets obtained by exfoliation of layered crystals have been highlighted as the intriguing colloidal units; however, the size polydispersity of the nanosheets has been preventing precise design of the assembled structures and their functions. Here, we demonstrate that the anionic titanate nanosheets with monodisperse size reversibly form very unusual superstructured mesophases through finely tunable weak attractive interactions between the nanosheets. Transmission electron microscopy, polarizing optical microscopy, small-angle x-ray scattering, and confocal laser scanning microscopy clarified the reversible formation of the mesophases (columnar nanofibers, columnar nematic liquid crystals, and columnar nanofiber bundles) as controlled by counter cations, nanosheet concentration, solvent, and temperature.

Leptonic neutral-current probes in a short-distance DUNE-like setup

Precision measurements of neutrino-electron scattering may provide a viable way to test the nonminimal form of the charged and neutral current weak interactions within a hypothetical near-detector setup for the Deep Underground Neutrino Experiment (DUNE). Although low-statistics, these processes are clean and provide information complementing the results derived from oscillation studies. They could shed light on the scale of neutrino mass generation in low-scale seesaw schemes. Published by the American Physical Society 2024

Cardiovascular medications, high-sensitivity cardiac troponin T concentrations, and long-term outcome in non-ST segment elevation acute coronary syndrome.

Cardiac troponin plays an essential role in the management of non-ST segment elevation acute coronary syndrome (NSTE-ACS). However, it is not clear whether troponin concentrations provide guidance regarding the initiation of prognostically beneficial cardiovascular medications [i.e. betablockers, renin-angiotensin-aldosterone system (RAAS) inhibitors, and statins] in NSTE-ACS. Registry-based study investigating three NSTE-ACS cohorts (n = 43 075, 40 162, and 46 698) with elevated high-sensitivity cardiac troponin concentrations >14 ng/L. Cox proportional regression models with the addition of interaction terms were used to analyse the interrelations of high-sensitivity cardiac troponin T (hs-cTnT) concentrations, new initiated medications with the respective three drug classes, and long-term risk of all-cause mortality and major adverse events (MAE). Betablockers were associated with risk reductions of 8 and 5% regarding all-cause mortality and MAE, respectively. There was no evidence of an interaction with hs-cTnT concentrations. RAAS inhibitors were associated with 13 and 8% risk reductions, respectively, with a weak interaction between hs-cTnT and MAE (Pinteraction = 0.016). However, no increasing prognostic benefit was noted at hs-cTnT concentrations >100 ng/L. Statins were associated with 38 and 32% risk reductions, respectively, with prognostic benefit across the entire range of hs-cTnT concentrations, and with a weak interaction regarding MAE (Pinteraction = 0.011). Cardiovascular medications provide different prognostic benefit in patients with NSTE-ACS with elevated hs-cTnT, and there was some evidence of greater treatment effects regarding MAE along with higher hs-cTnT concentrations. However, hs-cTnT appears only to have limited value overall for customizing such treatments.

Precise Regulation the Multiemission Based on Soft Double Salt for Information Encryption.

Manipulation of multiemissive luminophores is meaningful for exploring luminescent materials. Herein, we report a soft double salt assembly strategy that could result in well-organized nanostructures and different luminescence based on multiple weak intermolecular interactions thanks to the existence of electrostatic attraction between the anionic and cationic platinum(II) complexes. The cationic complexes B1 and B2 can coassemble with anionic complex A, respectively, and the emission switches from monomeric and excimeric emission to the triplet metal-metal-to-ligand charge transfer (3MMLCT) along with morphology changes from 0-dimensional (0-D) nanospheres to 3-dimensional (3-D) nanostructures. It is demonstrated that an isodesmic growth mechanism is adopted during the spontaneous self-assembly process, and the relative negative ΔG values make the anionic and cationic complex molecules prefer to form aggregates based on π-π stacking, Pt···Pt interactions, and electrostatic interactions. The coassembly strategy between anionic and cationic complexes endows them with multicolor luminescent and apparent color as optical materials for advanced information encryption.

Re-analysis of temperature dependent neutron capture rates and stellar β-decay rates of 95-98Mo

The neutron capture rates and temperature dependent stellar beta decay rates of Mo isotopes are investigated within the framework of the statistical code TALYS v1.96 and the proton neutron quasi particle random phase approximation (pn-QRPA) model. The Maxwellian average cross-section (MACS) and neutron capture rates for the Mo(n,γ) Mo radiative capture process are analyzed within the framework of the statistical code TALYS v1.96 based on the phenomenological nuclear level density model and gamma strength functions. The present model-based computations for the MACS are comparable to the existing measured data. The sensitivity of stellar weak interaction rates to various densities and temperatures is investigated within the framework of the pn-QRPA model. Particular attention is paid to the impact of thermally filled excited states in the decaying nuclei ( Mo) on electron emission and positron capture rates. Furthermore, we compare the neutron capture rates and stellar beta decay rates. It is found that neutron capture rates are higher than stellar beta decay rates at both lower and higher temperatures.

Structural Characterization, Spectroscopic Profile, Molecular Docking, ADMET Properties, Molecular Dynamics Simulation Studies, and Molecular Mechanics Generalized Born Surface Area Analysis of 5-(Adamantan-1-yl)-4-butyl-2,4-dihydro-3H-1,2,4-triazole-3-thione as a Potential COX Inhibitor.

Employing a synergistic combination of theoretical density functional theory (DFT) and experimental techniques, we conducted a comprehensive analysis elucidating the structural and pharmacological attributes of 5-(adamantan-1-yl)-4-butyl-2,4-dihydro-3H-1,2,4-triazole-3-thione (5A4BT) as a potent COX inhibitor. The X-ray crystallographic data of 5A4BT showed the pivotal role played by weak interactions, notably π-π and C-H-π interactions, alongside hydrogen bonding, in orchestrating the intricate supramolecular architectures within the crystalline lattice. A quantitative analysis of the arrangement of the crystal structure, as well as both inter- and intramolecular interactions, was conducted using Hirshfeld surfaces and 2D fingerprint plots. Additionally, a comprehensive examination of the IR spectra was undertaken, employing both experimental methods and theoretical DFT techniques, to elucidate the vibrational characteristics of the compound. The strength of intermolecular N-H···S hydrogen bonding and charge transfer within the system was assessed through natural bonding orbital analysis. Moreover, Bader's atoms in molecules theory was employed to estimate the strength of intermolecular hydrogen bonds, revealing strong interactions within the 5A4BT dimer. The title compound exhibited binding affinities of -6.4 and -6.5 kcal/mol for COX1 (PDB 3KK6) and COX2 (1CX2) target proteins, respectively. For the first time, predictions regarding ADMET properties, drug-likeness, and toxicity, including favorable bioavailability, along with 100 ns molecular dynamics simulations, binding free energy, and energy decomposition per residue in the binding cavity of the protein from molecular mechanics generalized born surface area approach, collectively indicate the potential of 5A4BT as a nonselective COX inhibitor.

Majorana phase and matter effects in neutrino chiral oscillation

Due to finite masses and mixing, for neutrinos propagation in space-time, there is a chiral oscillation between left- and right- chiral neutrinos, besides the usual oscillation between different generations. The probability of chiral oscillation is suppressed by a factor of m2/E2 making the effect small for relativistic neutrinos. However, for non-relativistic neutrinos, this effect can be significant. In matter, the equation of motion is modified. When neutrinos produced in weak interaction pass through the matter, the eigen-energies are split into two different ones depending on the helicity of the neutrino. This results in different oscillation behavior for neutrinos with different helicity, in particular there is a new resonant effect related to the helicity state of neutrino different than the usual MSW effect. For Majorana neutrinos, chiral oscillation also depends on Majorana phases.

Metal Ion-Induced Acid Hydrolysis Strategy for the One-Step Synthesis of Tough and Highly Transparent Hydrolyzed Polyacrylamide Hydrogels.

Polyacrylamide (PAM) hydrogel is hard to enhance through coordination bonds because amide groups rarely coordinate with metal ions strongly in an aqueous solution. It is known that the aqueous solution of ZrOCl2.8H2O can be strongly acidic depending on its concentration. Consequently, through a facile one-step metal ion-induced acid hydrolysis strategy (MIAHS), tough and highly transparent hydrolyzed PAM physical hydrogels are prepared by using ZrOCl2.8H2O in this work. The formation of the partially hydrolyzed PAM physical hydrogels elucidates that the side reaction of imidization during common acid hydrolysis of PAM can be perfectly overcome because the structure of the Zr(IV) ion and its interaction with amide groups promote selective acidic hydrolysis from amide to carboxyl groups. Compared to most coordination cross-linked hydrogels, which need at least two-step fabrication, the hydrolyzed PAM hydrogel via MIAHS can be obtained by one-step synthesis due to the weak interaction between amide groups and Zr(IV). The obtained PAM hydrogel cross-linked by hydrogen bonds and coordination bond between Zr(IV) and carboxyl is a multibond network (MBN) and can achieve hierarchical energy dissipation, which exhibits excellent mechanical properties (tensile strength of 3.15 MPa, elongation at break of 890%, and toughness of 17.0 MJ m-3), high transparence (transmittance of 95%), and outstanding conductivity (5.6 S m-1) at water content of 80 wt %. The high gauge factor (from 2.24 to 12.8 as the strain increases from 0 to 400%) endows the hydrolyzed PAM hydrogels with promising application as strain sensors. Furthermore, in addition to ZrOCl2.8H2O, the fact that various hydrolyzable compounds of Ti(IV), Zr(IV) Hf(IV), and Sn(IV) can also fabricate tough hydrolyzed PAM hydrogels verifies the universality of MIAHS. Therefore, the simple, efficient, and universal MIAHS will shed new light on preparing functional PAM-based hydrogels.

Theoretical Validation of Non-Noble Cu Sites Integrated on SnO2 Nanoflowers for Enhanced Gas Sensing of Ethanethiol at Room Temperature.

Ethanethiol (EtSH), being highly toxic, flammable, and explosive, poses significant risks to human health and safety and is capable of causing fires and explosions. Room-temperature detection using chemiresistive gas sensors is essential for managing these risks. However, the gas-sensing performance of conventional metal-oxide sensing materials may be limited by their weak interaction with EtSH at room temperature. Herein, SnO2 nanoflowers assembled with non-noble Cu-site-enriched porous nanosheets were designed and prepared by an in situ self-template pyrolysis synthesis strategy to enable highly sensitive and selective room-temperature detection of EtSH. By regulating the number of non-noble Cu sites, these nanoflowers achieved efficient EtSH sensing with a Ra/Rg value of 11.0 at 50 ppb, ensuring high selectivity, reproducibility, and stability at room temperature. Moreover, a comparative analysis of the room-temperature gas-sensing performance of SnO2 nanoflowers with non-noble Fe- or Ni-site-enriched nanosheets highlights the benefits of non-noble Cu sites for EtSH detection. Density functional theory (DFT) analysis reveals that non-noble Cu sites have a unique affinity for EtSH, offering preferential binding over other gases and explaining the outstanding sensing performance of non-noble Cu-site-enriched nanosheet-assembled SnO2 nanoflowers. The structural and interface engineering of the sensing materials presented in this work provides a promising approach for offering efficient and durable gas sensors operable at room temperature.

Pathway Selection in Temporal Evolution of Supramolecular Polymers of Ionic π-Systems: Amphiphilic Organic Solvent Dictates the Fate of Water.

Understanding solvent-solute interactions is essential to designing and synthesising soft materials with tailor-made functions. Although the interaction of the solute with the solvent mixture is more complex than the single solvent medium, solvent mixtures are exciting to unfold several unforeseen phenomena in supramolecular chemistry. Here, we report two unforeseen pathways observed during the hierarchical assembly of cationic perylene diimides (cPDIs) in water and amphiphilic organic solvent (AOS) mixtures. When the aqueous supramolecular polymers (SPs) of cPDIs are injected into AOS, initially kinetically trapped short SPs are formed, which gradually transform into thermodynamically stable high aspect ratio SP networks. Using various experimental and theoretical investigations, we found that this temporal evolution follows two distinct pathways depending on the nature of the water-AOS interactions. If the AOS is isopropanol (IPA), water is released from cPDIs into bulk IPA due to strong hydrogen bonding interactions, which further decreases the monomer concentration of cPDIs (Pathway-1). In the case of dioxane AOS, cPDI monomer concentration further increases as water is retained among cPDIs (Pathway-2) due to relatively weak interactions between dioxane and water. Interestingly, these two pathways are accelerated by external stimuli such as heat and mechanical agitation.

Elastin-Like Peptide as a Model for Disordered Proteins: Diffusion Behaviour in Self-Crowding Conditions.

Despite the current high interest, there is limited information on diffusion data for intrinsically disordered proteins (IDPs). This study investigates the effect of crowding on the diffusion behaviour of an elastin-like peptide (ELP), by combined pulse field gradient (PFG) and static field gradient (SFG) NMR techniques. We interpret our findings in terms of highly dynamic chain assemblies with weak interactions, resulting in ELP diffusion that is primarily governed by the viscous flow of the solvent. The diffusion behaviour of the peptide appears to resemble that of globular proteins rather than flexible linear polymers over a wide concentration range.

Unveiling a Family of Dimerized Quantum Magnets, Conventional Antiferromagnets, and Nonmagnets in Ternary Metal Borides.

Dimerized quantum magnets are exotic crystalline materials where Bose-Einstein condensation of magnetic excitations can happen. However, known dimerized quantum magnets are limited to only a few oxides and halides. Here, we unveil 9 dimerized quantum magnets and 11 conventional antiferromagnets in ternary metal borides MTB4 (M = Sc, Y, La, Ce, Lu, Mg, Ca, and Al; T = V, Cr, Mn, Fe, Co, and Ni), where T atoms are arranged in structural dimers. Quantum magnetism in these compounds is dominated by strong antiferromagnetic (AFM) interactions between Cr (Cr and Mn for M = Mg and Ca) atoms within the dimers, with much weaker interactions between the dimers. These systems are proposed to be close to a quantum critical point between a disordered singlet spin-dimer phase, with a spin gap, and the ordered conventional Néel AFM phase. They greatly enrich the materials inventory that allows investigations of the spin-gap phase. Conventional antiferromagnetism in these compounds is dominated by ferromagnetic Mn (Fe for M = Mg and Ca) interactions within the dimers. The predicted stable and nonmagnetic (NM) YFeB4 phase is synthesized and characterized, providing a scarce candidate to study Fe dimers and Fe ladders in borides. The identified quantum, conventional, and NM systems provide a platform with abundant possibilities to tune the magnetic exchange coupling by doping and study the unconventional quantum phase transition and conventional magnetic transitions. This work opens new avenues for studying novel magnetism in borides arising from spin dimers and establishes a theoretical workflow for future searches for dimerized quantum magnets in other families of materials.

Greasy Cations Bind to Neutral Macromolecules in Aqueous Solution.

Ions influence the solution properties of macromolecules. Although much is known about anions, cationic effects are considered mostly in terms of weak interactions or exclusion from neutral interfaces. Herein, we have systematically studied the effect of quaternary tetraalkylammonium cations (NH4+, NMe4+, NEt4+, NPr4+, NBu4+) on the phase transition of poly(N-isopropylacrylamide) (PNIPAM) in aqueous solution. Solubility measurements were coupled to 1H NMR and ATR-FTIR spectroscopic measurements. The solubility and NMR measurements revealed a direct binding between the greasiest cations and the isopropyl group of the macromolecule, evidenced from the nonlinear, Langmuir-type chemical shift response only at the isopropyl NMR signals with increasing salt concentrations. The ATR-FTIR measurements focusing on the amide oxygen showed that it is not the main direct-binding site. Additionally, the salting-out effects of the greasier cations correlate with their hydration entropies. These results demonstrate that the most weakly hydrated cations can bind to macromolecules as strongly as the weakly hydrated Hofmeister anions.

Anisotropic 2D van der Waals Magnets Hosting 1D Spin Chains.

The exploration of 1D magnetism, frequently portrayed as spin chains, constitutes an actively pursued research field that illuminates fundamental principles in many-body problems and applications in magnonics and spintronics. The inherent reduction in dimensionality often leads to robust spin fluctuations, impacting magnetic ordering and resulting in novel magnetic phenomena. Here, structural, magnetic, and optical properties of highly anisotropic 2D van der Waals antiferromagnets that uniquely host spin chains are explored. First-principle calculations reveal that the weakest interaction is interchain, leading to essentially 1D magnetic behavior in each layer. With the additional degree of freedom arising from its anisotropic structure, the structure is engineered by alloying, varying the 1D spin chain lengths using electron beam irradiation, or twisting for localized patterning, and spin textures are calculated, predicting robust stability of the antiferromagnetic ordering. Comparing with other spin chain magnets, these materials are anticipated to bring fresh perspectives on harvesting low-dimensional magnetism.

Frequency-Dependent Ecological Interactions Increase the Prevalence, and Shape the Distribution, of Preexisting Drug Resistance

The evolution of resistance remains one of the primary challenges for modern medicine, from infectious diseases to cancers. Many of these resistance-conferring mutations often carry a substantial fitness cost in the absence of treatment. As a result, we would expect these mutants to undergo purifying selection and be rapidly driven to extinction. Nevertheless, preexisting resistance is frequently observed from drug-resistant malaria to targeted cancer therapies in non-small-cell lung cancer (NSCLC) and melanoma. Solutions to this apparent paradox have taken several forms, from spatial rescue to simple mutation supply arguments. Recently, in an evolved resistant NSCLC cell line, we found that frequency-dependent ecological interactions between ancestor and resistant mutant ameliorate the cost of resistance in the absence of treatment. Here, we hypothesize that frequency-dependent ecological interactions in general play a major role in the prevalence of preexisting resistance. We combine numerical simulations with robust analytical approximations to provide a rigorous mathematical framework for studying the effects of frequency-dependent ecological interactions on the evolutionary dynamics of preexisting resistance. First, we find that ecological interactions significantly expand the parameter regime under which we expect to observe preexisting resistance. Next, even when positive ecological interactions between mutants and ancestors are rare, these resistant clones provide the primary mode of evolved resistance because even weak positive interaction leads to significantly longer extinction times. We then find that even in the case where mutation supply alone is sufficient to predict preexisting resistance, frequency-dependent ecological forces still contribute a strong evolutionary pressure that selects for increasingly positive ecological effects (negative frequency-dependent selection). Finally, we genetically engineer several of the most common clinically observed resistance mechanisms to targeted therapies in NSCLC, a treatment notorious for preexisting resistance. We find that each engineered mutant displays a positive ecological interaction with their ancestor. As a whole, these results suggest that frequency-dependent ecological effects can play a crucial role in shaping the evolutionary dynamics of preexisting resistance. Published by the American Physical Society 2024

Synthesis of isoprene from 1-butanol and from diethyl ether in the presence of 3d-metal oxides nano-clusters acting as catalysts

The conformational equilibria of 1-butanol (1-BuOH) and diethyl ether (DEE) molecules were investigated in gas and liquid phases. The geometry of the molecules of all stable isomers of 1-BuOH and DEE was fully optimised and the thermochemical quantities’ values (ΔH, ΔG and ΔS) were computed in the temperature range from close to 0 K to 1000 K at the Density Functional Theory (DFT) level. DEE shows two rotamers (namely, Tt and Tg), whereas five different rotamers were identified for 1-BuOH (namely, Tt, Tg, Gt, Gg and Gg’) with different stability, due to the presence of intramolecular interactions. Electrostatic properties of 1-BuOH, ethanol (EtOH), and DEE were also evaluated. Calculated vibration spectra of 1-BuOH and DEE were compared with the experimental FT-IR and Raman spectra recorded in neat phase and diluted in cyclohexane (CHX). The experimental vibrational spectra found the best match with the sum of calculated spectra using the Boltzmann coefficients based on the thermal stability of each conformer. The frequency shift observed for some peaks as a function of the concentration of 1-BuOH in CHX reveals the impact of hydrogen bonds between 1-BuOH molecules, in particular in the case of conformer Gg’. In contrast, very weak interactions among molecules of DEE were spectroscopically detected. The transformation reactions of {1-BuOH+EtOH} and {DEE+EtOH} mixtures at different temperatures were studied using the method of quantum mechanical calculations. The mechanism of isoprene formation from these mixtures was determined taking into account the chemisorption of 1-BuOH and DEE onto metal oxide nano-clusters M4O4 (M = Sc to Zn) and its effect on the vibrations of BuOH and DEE at the interface for M = Zn, Cu and Ti using Raman microscopic spectroscopy.

Mn loading on montmorillonite surfaces for Cd stabilization: Insights from density functional theory calculations and surface complexation modeling

The latest works have been devoted to the stabilization mensuration for heavy metals and indicate that clay minerals can promote Cd(II) precipitation by favoring the retention of Mn(II). The assessment however has been tempered due to lacking the information about the molecular-level surface complexation structure and Cd nucleation process on clay surfaces. In this study, microscopic mechanisms for adsorption and stabilization of Cd at montmorillonite interfaces with or without Mn loading were leveraged by combining surface complexation model (SCM) evaluations and density functional theory (DFT) calculations. Mn(II) substitution resulted in increases in surface acidity equilibrium constant (pKa) by about 1 unit and complexation constant (lgK(SOCd+)) of Cd(II) by about 0.15 units at clay surface, and Mn(II) adion can provide extra active sites (i.e., OH− groups) for complexing Cd(II) via hydrolysis. DFT calculations revealed Mn(II) and Cd(II) adions bind on base surfaces by isomorphic substitutions through weak long-range interactions, whereas on edge surfaces by surface complexation with strong but short-range connections. Adsorption energy calculations and electrostatic distribution showed heterogenous nucleation with subsequent cations on clay surfaces was thermodynamically favored, the stabilization process underwent the steps of the adsorption-hydrolysis-precipitation. The derived results provide a quantitative basis for understanding the precipitation and heterogenous nucleation of cations on clay surfaces in surficial environments.

Unraveling the role of non-planarity of free base porphyrins in intermolecular hydrogen bonding interactions with phenols

Three different types of meso‑substituted freebase porphyrins (H2TTP, H2TMP and H2DDMP) with varied number and nature of electron donating groups (-CH3 and –OCH3) were synthesized. The molecular interactions of the porphyrins with different phenol derivative were explored using single crystal X-ray, NMR and their affinity by varied spectroscopic techniques. All three freebase porphyrins undergo strong intermolecular interactions with 2,4,6-trinitrophenol (TNP) and crystallized in a triclinic crystal system with iso-structural behaviour. The crystal lattices are stabilized through intermolecular hydrogen bonding interactions (N–H∙∙∙O and C–H∙∙∙O) and electrostatic interactions. Increases in the non-planarity of freebase porphyrins enhance the reactivity which results in the formation of picrate anions with 1:2 adduct formation by proton transfer process. The role of weak intermolecular interactions was analysed and quantified through Hirshfeld surface and finger print analysis. DFT studies revealed that the electron-donating effect of the methoxy group plays a major role in decreasing HOMO-LUMO gap and in-plane co-operation through the decrease in the dihedral angles. The electron density at bond critical points follows the order H2TTP.2TNP>H2TMP.2TNP>H2DDMP.2TNP. Absorption and emission studies showed that dramatic changes in the Soret and Q-band pattern and the binding constants were altered with different phenols of varied pKa. The stabilization of molecular adducts were analyzed in correlation with 1H- NMR study to reveal the involvement of the hydrogen bonding.

Neighbor effect on conformational spaces of alanine residue in azapeptides

The conformational properties of Alanine (Ala) residue have been investigated to understand protein folding and develop force fields. In this work, we examined the neighbor effect on the conformational spaces of Ala residue using model azapeptides, Ac-Ala-azaGly-NHMe (3, AaG), and Ac-azaGly-Ala-NHMe (4, aGA1). Ramachandran energy maps were generated by scanning (φ, ψ) dihedral angles of the Ala residues in models with the fixed dihedral angles (φ = ±90°, ψ = ±0° or ±180°) of azaGly residue using LCgau-BOP and LCgau-BOP + LRD functionals in the gas and water phases. The integral-equation-formalism polarizable continuum model (IEF-PCM) and a solvation model density (SMD) were employed to mimic the solvation effect. The most favorable conformation of Ala residue in azapeptide models is found as the polyproline II (βP), inverse γ-turn (γ′), β-sheet (βS), right-handed helix (αR), or left-handed helix (αL) depending on the conformation of neighbor azaGly residue in isolated form. Solvation methods exhibit that the Ala residue favors the βP, δR, and αR conformations regardless of its position in azapeptides 3 and 4 in water. Azapeptide 5, Ac-azaGly-Ala-NH2 (aGA2), was synthesized to evaluate the theoretical results. The X-ray structure showed that azaGly residue adopts the polyproline II (βP) and Ala residue adopts the right-handed helical (αR) structure in aGA2. The conformational preferences of aGA2 and the dimer structure of aGA2 based on the X-ray structure were examined to assess the performance of DFT functionals. In addition, the local minima of azapeptide 6, Ac-Phe-azaGly-NH2 (FaG), were compared with the previous experimental results. SMD/LCgau-BOP + LRD methods agreed well with the reported experimental results. The results suggest the importance of weak dispersion interactions, neighbor effect, and solvent influence in the conformational preferences of Ala residue in model azapeptides.