Waterlogging Tolerance Research Articles

Comparative transcriptomics discovers the genetic basis of contrasting waterlogging tolerance between two cultivated jute species

Farmers prefer dark jute (Corchorus olitorius var. O-9897) to white jute (Corchorus capsularis var. CVL-1) because dark jute produces more bast fiber and has greater fiber strength. Crossing incompatibility between these two jute species is the main genetic barrier to transfer waterlogging-tolerant capability from white jute to dark jute. So, to develop a waterlogging-tolerant dark jute variety, gene(s) of interest for certain morphological, anatomical, and physiological features must be transferred from white jute to dark jute without the use of traditional crossing techniques. Therefore, we investigated the comparative gene expressions of CVL-1 and O-9897 tap roots using RNA-Seq and qRT-PCR techniques as well as observed the morphological, histological and physiological behavior under waterlogging treatments. CVL-1 develops schizogenous aerenchyma for oxygen storage, as well as vascular tissues in its adventitious roots for moving water and nutrients from the water solution to the stem, which keeps its tap root less active and so saves more energy in its tap roots. O-9897, on the other hand, degrades its adventitious roots with lysigenous aerenchyma, which results in the formation of no vascular tissues. Thus, O-9897 solely uses its adventitious roots for oxygen storage, while its tap roots are used for water and nutrient transfer, resulting in constant energy depletion in O-9897 tap roots. Consequently, CVL-1 can maintain its normal growth and O-9897 diminishes its bast fiber yield with the lack of energy. The key genes involved in the biogenesis of energy and phytohormones have been more inducing in CVL-1 than O-9897. ATP-producing glycolytic enzyme, phosphoglycerate kinase (CCACVL1_10615) showed remarkable upregulation in CVL-1 while missing in O-9897, playing a vital role in CVL-1 waterlogging tolerance. Our findings reveal a novel mechanism of waterlogging tolerance in white jute, which can be applied to the development of waterlogging-tolerant dark jute varieties in the future.

Evaluation of waterlogging tolerance and responses of protective enzymes to waterlogging stress in pumpkin.

Waterlogging caused by short and severe, or prolonged precipitation can be attributed to global warming. Pumpkin plants are drought-tolerant but not tolerate to waterlogging stress. Under frequent rain and waterlogging conditions, the production of pumpkins is of lower quality, sometimes rotten, and harvest failure occurs in severe cases. Therefore, it is of great significance to assess the waterlogging tolerance mechanism of pumpkin plants. In this study, 10 novel pumpkin varieties from Baimi series were used. The waterlogging tolerance level of pumpkin plants was evaluated by measuring waterlogging tolerance coefficient of biomass and physiological indices using waterlogging stress simulation method. The criteria to evaluate the waterlogging tolerance capacities of pumpkin plants were also explored. Using principal component and membership function analysis, waterlogging tolerance levels of the pumpkin varieties were ranked as follows: Baimi No. 10>; Baimi No. 5>; Baimi No. 1>; Baimi No. 2>; Baimi No. 3>; Baimi No. 7>; Baimi No. 9>; Baimi No. 6>; Baimi No. 4>; Baimi No. 8. Based on the results, Baimi No. 10 was identified with strong waterlogging tolerance and Baimi No. 8 with weak waterlogging tolerance. The responses of malondialdehyde (MDA), proline, key enzymes responsible for anaerobic respiration, and antioxidant enzymes to waterlogging stress were studied in pumpkin plants. The relative expression levels of related genes were determined using real-time fluorescence quantitative PCR technique. The aim of our study was to assess the waterlogging tolerance mechanism of pumpkin plants, thus laying a theoretical foundation for breeding waterlogging-tolerant varieties in the future. After flooding stress treatment, the antioxidant enzyme activities, contents of proline and alcohol dehydrogenases of Baimi No. 10 and Baimi No. 8 displayed an increase followed by a decrease. All indices of Baimi No. 10 were higher than Baimi No. 8. MDA contents gradually increased, with the content being higher in Baimi No. 8 than Baimi No. 10. The activities of pyruvate decarboxylases (PDCs) in Baimi No. 8 and Baimi No. 10 exhibited a decrease initially, followed by an increase, and then a decrease again. The PDC activity in Baimi No. 8 was generally higher than Baimi No. 10. The relative expression levels of genes encoding superoxide dismutase, peroxidase, catalase, and ascorbate peroxidase were consistent with their corresponding enzyme activities. During the early stage of flooding stress, pumpkin plants waterlogging tolerance was improved by enhancing the expression levels of antioxidant enzyme encoding genes and increasing the antioxidant enzyme activities.

Oxygenation alleviates waterlogging-caused damages to cherry rootstocks

Waterlogging has occurred more frequently in recent years due to climate change, so it is a huge threat to crop yield and quality. Sweet cherry, a fruit tree with a high economic value, is sensitive to waterlogging stress. One of the most effective methods for enhancing the waterlogging tolerance of sweet cherries is to select waterlogging-tolerant rootstocks. However, the waterlogging tolerance of different cherry rootstocks, and the underlying mechanism remains uncharacterized. Thus, we first evaluated the waterlogging resistance of five sweet cherry rootstocks planted in China. The data showed that ‘Gisela 12’ and ‘Colt’ were the most waterlogging-sensitive and -tolerant among the five tested varieties, respectively. Oxygenation effectively alleviated the adverse impacts of waterlogging stress on cherry rootstocks. Moreover, we found that the waterlogging group had lower relative water content, Fv/Fm value, net photosynthetic rate, and higher antioxidant enzyme activities, whereas the oxygenated group performed better in all these parameters. RNA-Seq analysis revealed that numerous DEGs were involved in energy production, antioxidant metabolism, hormone metabolism pathways, and stress-related transcription factors. These findings will help provide management strategies to enhance the waterlogging tolerance of cherry rootstocks and thereby achieve higher yield and better quality of cherries.Graphical

BREEDING POTENTIAL OF SESAME FOR WATERLOGGING STRESS IN ASIA

Sesame is an important oilseed crop in Asia that is often affected by waterlogging stress, leading to significant yield losses and reduced crop quality. Breeding waterlogging-tolerant sesame varieties is essential for ensuring the sustainable production of this crop in regions prone to waterlogging events. This review provides an overview of the challenges and opportunities associated with breeding sesame for waterlogging tolerance in Asia. We discuss the current state of sesame production in the region, sesame's physiological and morphological responses to waterlogging stress, and the genetic mechanisms underlying waterlogging tolerance. Moreover, we highlight the importance of identifying and utilizing waterlogging-tolerant sesame varieties and germplasm resources and the challenges in breeding waterlogging-tolerant sesame. Finally, we outline future perspectives for breeding waterlogging-tolerant sesame, including integrating traditional and modern breeding approaches, the potential for omics technologies and systems biology, and the role of climate-smart agriculture and sustainable management practices in mitigating waterlogging stress. By addressing these challenges, researchers and breeders can contribute to the continued success of sesame production in Asia and help to safeguard the livelihoods of millions of smallholder farmers who depend on this crop for their income and food security.

Waterlogging resistance and evaluation of physiological mechanism of three peach (Prunus persica) rootstocks.

Waterlogging occurs due to poor soil drainage or excessive rainfall. It is a serious abiotic stress factor that negatively affects crop growth. Waterlogging often causes plants to shed leaves, fruits, and, ultimately, to die. Peach (Prunus persica) trees are generally intolerant to waterlogging, and the primary peach rootstock used in Chinais "Maotao," which has very poor resistance to sensitivity. Therefore, waterlogging has become a restriction on the development of the peach industry in many regions. In this experiment, we tested the waterlogging resistance of "Maotao (Prunus persica (L.) Batsch)" (MT), "Shannong1 (GF677 × Cadaman)" (SN1), and "Mirabolano 29C (Prunus cerasifera)" (M29C) rootstocks. Using a simulated waterlogging method, the effects of waterlogging on the photosynthetic system, leaf pigments, osmotic adjustment, lipid membrane peroxidation, and antioxidant system of these three peach rootstocks were studied, and the changes of chlorophyll fluorescence parameters and fluorescence imaging were observed. The results showed that, with prolonged waterlogging, the photosynthetic pigment content and photosynthesis of the three peach rootstocks decreased rapidly, but the decomposition rate of SN1 and M29C chlorophyll was slower, and it still had high light energy absorption and energy transfer capabilities under waterlogging stress, which reduced the damage caused by waterlogging stress; under the stress of flooding, the osmoregulatory substances of the three rootstocks increased to varying degrees compared with normal conditions. At the same time, the enzyme activity of superoxide dismutase (SOD) activity, peroxidase (POD) activity, and catalase (CAT) activity in the leaves of the three rootstocks under flooding stress all increased and then decreased; during this period, malondialdehyde (MDA) continued to increase, and SN1 and M29C were significantly lower than MT; and chlorophyll fluorescence parameters, including the maximum photochemical efficiency (Fv/Fm), actual photochemical efficiency (ΦPSII), photochemical quenching coefficient (qP), non-photochemical quenching (NPQ), and electron transfer rate (ETR) decreased significantly. The tolerance of SN1 and M29C to waterlogging was significantly better than that of MT rootstocks. The rootstock and grafted seedlings of SN1 have good waterlogging tolerance.

Effect of Reproductive Stage-Waterlogging on the Growth and Yield of Upland Cotton (Gossypium hirsutum)

The reproductive stage of cotton (Gossypium sp.) is highly sensitive to waterlogging. The identification of potential elite upland cotton (Gossypium hirsutum) cultivar(s) having higher waterlogging tolerance is crucial to expanding cotton cultivation in the low-lying areas. The present study was designed to investigate the effect of waterlogging on the reproductive development of four elite upland cotton cultivars, namely, Rupali-1, CB-12, CB-13, and DM-3, against four waterlogging durations (e.g., 0, 3, 6, and 9-day). Waterlogging stress significantly impacted morpho-physiological, biochemical, and yield attributes of cotton. Two cotton cultivars, e.g., CB-12 and Rupali-1, showed the lowest reduction in plant height (6 and 9%, respectively) and boll weight (8 and 5%, respectively) at the highest waterlogging duration of 9 days. Physiological and biochemical data revealed that higher leaf chlorophyll, proline, and relative water contents, and lower malondialdehyde contents, particularly in CB-12 and Rupali-1, were positively correlated with yield. Notably, CB-12 and Rupali-1 had higher seed cotton weight (90.34 and 83.10 g, respectively), lint weight (40.12 and 39.32 g, respectively), and seed weight (49.47 and 43.78 g, respectively) per plant than CB-13 and DM-3 in response to the highest duration of waterlogging of 9 days. Moreover, extensive multivariate analyses like Spearman correlation and the principle component analysis revealed that CB-12 and Rupali-1 had greater coefficients in yield and physiological attributes at 9-day waterlogging, whereas CB-13 and DM-3 were sensitive cultivars in response to the same levels of waterlogging. Thus, CB-12 and Rupali-1 might be well adapted to the low-lying waterlogging-prone areas for high and sustained yield.

Identification of important morphology for waterlogging tolerance from developed mung bean F2 population

Waterlogging is severe abiotic stress during mung bean (Vigna radiata (L.) R. Wilczek var. radiata) production. Waterlogging impacts yield loss for the legume crop by around 40%-70%, depending on the severity and duration of the waterlogging. In total, 107 collected mung bean varieties were evaluated under managed waterlogging. The F2 population from crossing between waterlogging-tolerant and -susceptible mung bean varieties were screened under waterlogging conditions. Morphological responses to the waterlogging were recorded. Correlation and path coefficient analyses were used to identify essential traits for waterlogging tolerance and seed yield potential under water stress. Mung bean varieties in clusters 5 and 6 were high waterlogging tolerance with survival rates of 66.66% and 61.11%, respectively. Of 199 F2 lines from crossings between the Kamphaeng Sean2 and W162, 20 lines presented high waterlogging tolerance. The injury score was negatively correlated with the number of leaves at the final date of waterlogging (-0.845) and 1 wk after terminating the waterlogging (-0.885). At the final date of waterlogging condition, the number of leaves and leaf greenness stability index directly affected leaf injury at -0.5928 and -0.4385. One week after waterlogging termination, only the number of leaves affected the leaf injury at -0.8599. The number of leaves directly affected seed yield components at 0.6534 and higher than the direct effect of the other traits. Thus, the number of leaves was a suitable morphological parameter along with the injury score for selecting waterlogging tolerance. The number of leaves was a suitable parameter for selecting high seed yield potential under waterlogging conditions.

Tissue-Specific Transcriptome and Metabolome Analysis Reveals the Response Mechanism of Brassica napus to Waterlogging Stress

During the growth period of rapeseed, if there is continuous rainfall, it will easily lead to waterlogging stress, which will seriously affect the growth of rapeseed. Currently, the mechanisms of rapeseed resistance to waterlogging stress are largely unknown. In this study, the rapeseed (Brassica napus) inbred lines G230 and G218 were identified as waterlogging-tolerant rapeseed and waterlogging-sensitive rapeseed, respectively, through a potted waterlogging stress simulation and field waterlogging stress experiments. After six days of waterlogging stress at the seedling stage, the degree of leaf aging and root damage of the waterlogging-tolerant rapeseed G230 were lower than those of the waterlogging-sensitive rapeseed G218. A physiological analysis showed that waterlogging stress significantly increased the contents of malondialdehyde, soluble sugar, and hydrogen peroxide in rape leaves and roots. The transcriptomic and metabolomic analysis showed that the differential genes and the differential metabolites of waterlogging-tolerant rapeseed G230 were mainly enriched in the metabolic pathways, biosynthesis of secondary metabolites, flavonoid biosynthesis, and vitamin B6 metabolism. Compared to G218, the expression levels of some genes associated with flavonoid biosynthesis and vitamin B metabolism were higher in G230, such as CHI, DRF, LDOX, PDX1.1, and PDX2. Furthermore, some metabolites involved in flavonoid biosynthesis and vitamin B6 metabolism, such as naringenin and epiafzelechin, were significantly up-regulated in leaves of G230, while pyridoxine phosphate was only significantly down-regulated in roots and leaves of G218. Furthermore, foliar spraying of vitamin B6 can effectively improve the tolerance to waterlogging of G218 in the short term. These results indicate that flavonoid biosynthesis and vitamin B6 metabolism pathways play a key role in the waterlogging tolerance and hypoxia stress resistance of Brassica napus and provide new insights for improving the waterlogging tolerance and cultivating waterlogging-tolerant rapeseed varieties.

Transcriptome analysis of barley (Hordeum vulgare L.) under waterlogging stress, and overexpression of the HvADH4 gene confers waterlogging tolerance in transgenic Arabidopsis

BackgroundWaterlogging is one of the major abiotic stresses in barley and greatly reduces grain yield and quality. To explore the mechanism controlling waterlogging tolerance in barley, physiological, anatomical and transcriptional analyses were performed in two contrasting barley varieties, viz. Franklin (susceptible) and TX9425 (tolerant).ResultsCompared to Franklin, TX9425 had more adventitious roots and aerenchymas and higher antioxidant enzyme activities. A total of 3064 and 5693 differentially expressed genes (DEGs) were identified in TX9425 after 24 h and 72 h of waterlogging treatment, respectively, while 2297 and 8462 DEGs were identified in Franklin. The results suggested that TX9425 was less affected by waterlogging stress after 72 h of treatment. The DEGs were enriched mainly in energy metabolism, hormone regulation, reactive oxygen species (ROS) scavenging, and cell wall-modifying enzymes. Alcohol dehydrogenase (ADH) plays an important role in response to waterlogging stress. We found that HvADH4 was significantly upregulated under waterlogging stress in TX9425. Transgenic Arabidopsis overexpressing HvADH4 displayed higher activity of antioxidant enzymes and was more tolerant to waterlogging than the wild type (WT).ConclusionsThe current results provide valuable information that will be of great value for the exploration of new candidate genes for molecular breeding of waterlogging tolerance in barley.

Waterlogging effects on leaf element concentrations and cane weight of sugarcane genotypes

Aim: The aim of the present experiment was to examine whether waterlogging induced deficiency or excess of elements, is the cause for reduction in cane weight of sugarcane genotypes under waterlogged conditions. Methodology: The experiment was conducted in pots with eleven sugarcane genotypes grown under control and waterlogged conditions. Waterlogging treatment was imposed at 120 days crop age for a period of 60 days. Cane weight and element concentrations were measured at the end of waterlogging. Results: Compared to control, reduction in cane weight of sugarcane genotypes under waterlogging varied from 5.3% (A-46-11) to 32.3% (CoJ 64). Waterlogging caused a significant decrease in leaf N, P, K, S, Zn and Cu concentrations of sugarcane genotypes; the extent of decreases in leaf N and S were more and values for these elements dropped below their reported critical deficiency level for most genotypes. There was a significant inverse correlation between leaf K and S concentration, and reduction in cane weight of sugarcane genotypes, indicating that genotypes with high leaf K and S under waterlogging have relatively less reduction in cane weight. There were significant increase in the leaf Fe, Al, Mn and Na concentrations under waterlogging, however, increase in these elements were not correlated with reduction in cane weight of sugarcane genotypes. Interpretation: The results suggest that deficiencies of N, K and S rather than excess of Fe, Al and Mn is a major cause for reduction in cane weight of sugarcane genotypes under waterlogged condition. The genotypes tolerant to N, K and S deficiencies under waterlogging can be utilized in breeding program for developing sugarcane varieties with improved waterlogging tolerance. Key words: Cane weight, Element deficiencies, Element toxicities, Sugarcane, Waterlogging

Exogenous Spermidine Alleviated Waterlogging Damages in Two Varieties of Camellia oleifera

The potential management of waterlogging-damaged plants can be through the promotion of aliphatic polyamine accumulation, such as spermidine (SPD), in non-accumulator and accumulator species under stress. Camellia oleifera, commonly called tea oil, is an evergreen shrub confronting waterlogged soils in Hainan forest plantations during the pluvial season. As far as we know, few studies focused on the responses of C. oleifera to abiotic stresses, such as waterlogging (WL), and the involvement of SPD in WL tolerance remains unclear. Therefore, two cultivars of C. oleifera (CoH1 and CoH2) were subjected to WL and exogenous SPD to shed light on the role of SPD on WL tolerance via the morphological and physio-biochemical responses of C. oleifera under stress. The results showed that the two varieties of C. oleifera were sensitive to WL stress, and spraying SPD enhanced WL tolerance via root activities, photosynthesis, redox-homeostasis, antioxidant machinery, and compatible solute components. Thus, exogenous SPD significantly reduced the damages caused by WL in C. oleifera seedlings. Moreover, the alternative oxidase (AOX) protein content was down regulated by WL in both varieties of C. oleifera, whereas exogenous SPD enhanced the AOX protein under stress. The two varieties of C. oleifera generally had similar morphological and physiological responses to WL. However, CoH2 demonstrated better photosynthesis compared to CoH1. The results of the present study provide a significant outlook to improve the accumulation of SPD in trees under abiotic stress, particularly via genome editing techniques.

Strawberry clover (Trifolium fragiferum): current status and future role in Australian agriculture

Strawberry clover (Trifolium fragiferum L.) is periodically raised as an alternative perennial pasture legume for temperate regions of Australia. Its tolerance of waterlogging is widely known, yet its ability to persist through periods of soil moisture deficit is often understated. Other desirable characteristics include its stoloniferous growth habit and tolerance of mildly saline conditions. Only four strawberry clover cultivars have been registered in Australia, and the most popular, cv. Palestine, is a direct introduction, released in 1938 and first certified in 1951. Furthermore, strawberry clover’s distribution has largely been confined to niche environments, particularly waterlogged and saline areas. This paper reviews the taxonomy and breeding system, morphology, distribution and ecology, and subsequent transfer of strawberry clover to Australia. It reviews and maps the suitability of strawberry clover for perennial pasture systems in the medium–-high rainfall and irrigated temperate zones of Australia, with reference to future climates. The paper also highlights the breeding focus, commercialisation and marketing required to supersede cv. Palestine and lists the germplasm available in the Australian Pastures Genebank, with origins. We conclude that, although strawberry clover is unlikely to become a dominant perennial pasture legume species in Australia, it could be used in a wider range of environments than just those affected by salinity and/or waterlogging stress.

Os fatores de ligação do elemento responsivo ao etileno contribuem para a tolerância ao encharcamento, regulando os parâmetros fotossintéticos e fisiológicos na petúnia

ABSTRACT: Ethylene-responsive element binding factors (ERFs) are widely involved in the regulation of plant responses to different abiotic stresses. In petunia (Petunia × hybrida), PhERF2 belonging to the subfamily Ⅶ of ERF transcription factors participates in the response to waterlogging stress. In this study, we investigated waterlogging tolerance variation of WT and transgenic petunia plants with RNAi silencing and overexpression of PhERF2 through photosynthetic and physiological performance. Chlorophyll content and root vigor declined continuously in both WT and PhERF2 transgenic lines under waterlogging stress, but the extent of the fall in PhERF2-overexpressing lines was less than that in WT and PhERF2-RNAi lines. At the end of waterlogging treatment, soluble protein levels in PhERF2-overexpressing lines were significantly higher than those in WT and PhERF2-RNAi lines, while the latter showed a higher malondialdehyde content overall. Different degrees of reductions in Pn, Gs, and Tr levels occurred in both WT and PhERF2 transgenic lines upon exposure to waterlogging. The Ci levels of PhERF2-overexpressing lines decreased after 3 hours of waterlogging treatment, and the Ci levels of WT and PhERF2-RNAi lines gradually increased from 6 to 72 hours of waterlogging treatment. These data suggested that non-stomatal factors were the primary limiting factors for Pn in WT and PhERF2-RNAi lines under severe stress, while the stomatal opening was the main factor limiting Pn in PhERF2-overexpressing lines. Our results demonstrated that the contribution of PhERF2 to the waterlogging tolerance of petunia appears to depend on the regulation of physiological and photosynthetic responses. PhERF2 represents a hopeful candidate gene for enhancing waterlogging tolerance of ornamental plants.

Changes in morphological traits associated with waterlogging, salinity and saline waterlogging in Festuca arundinacea.

Rising incidences of waterlogging and salinity, particularly in extensive livestock farming areas, pose increasing challenges to plant growth. This study investigated the morphological growth responses and tolerance of 39 Festuca arundinacea accessions to these stresses, with tolerance quantified by the relative growth rate under stress versus control conditions. Notably, more productive accessions under normal conditions also showed greater stress tolerance. Waterlogging was generally well-tolerated (89-113% of control relative growth rate), without significantly altering growth morphological components as increases in specific leaf area were offset by reductions in leaf weight ratio, maintaining stable leaf area ratios. Conversely, salinity and combined saline waterlogging significantly reduced relative growth rate (56-94% of control), with a substantial variation among accessions. A decrease in specific leaf area, suggestive of thicker leaves, correlated with higher tolerance to salinity and saline waterlogging (r =0.63). In summary, F. arundinacea displays diverse tolerance to these stresses, warranting further study into the adaptive mechanisms. Specific leaf area emerges as a potential selection marker for breeding programs targeting saline and waterlogging tolerance.

Evaluating the Waterlogging Tolerance of Faba Bean Genotypes at Different Growth Stages under Field Conditions

Waterlogging stress is one of the most important abiotic stresses in Mediterranean conditions such as north of Iran. The tolerance of faba bean to waterlogging may vary between genotypes. This study investigated the effects of 10 days of waterlogging on grain yield for 21 faba bean genotypes at two stages (flowering and pod-filling stages) during 2016-2017 and 2017-2018 under farm conditions. A randomized complete block design with three replications was used at three field sites (normal and waterlogging sites). Nine indices of endurance were calculated in normal and waterlogging conditions. The results indicated that waterlogging stress reduced the faba bean grain yield. Also, the negative waterlogging effect at flowering stage is more than pod-filling stage. Correlation coefficients and principal component analysis (PCA) results revealed that mean productivity (MP), geometric mean productivity (GMP), harmonic mean (HM), and stress tolerance index (STI) indices could be effectively used for screening of waterlogging stress tolerant genotypes. Waterlogging was caused to decrease significantly grain yield in all genotypes. According to results of three-dimensional graphs the genotypes G21, G18, G15, G6 and G2 with an average yield 4806, 4815, 4789, 4686 and 4681 kg.ha-1 , respectively, were selected as waterlogging stress tolerance and suitable grain yield under non-stress and waterlogging stress (waterlogging stress in flowering and pod-filling stages) conditions. Therefore, these genotypes can be used as source of genes in faba bean breeding programs to obtain tolerant cultivars and cultivation in the areas under waterlogging stress.

Leaf formononetin content of Trifolium subterraneum increases in response to waterlogging but its proportion of total isoflavones is little changed.

The isoflavone formononetin (F) impacts livestock fertility and cultivars of the pasture legume Trifolium subterraneum L. (subclover) have been selected for F levels ≤0.2% of leaf dry weight. However, the impact of waterlogging (WL) on isoflavones is little studied. We investigated the response of isoflavones, biochanin A (BA), genistein (G) and F, to WL for: (1) Yarloop (high F) and eight low F cultivars each from subspecies subterraneum , brachycalycinum and yanninicum (Experiment 1); and (2) four cultivars and 12 ecotypes of ssp. yanninicum (Experiment 2). WL impacted F: estimated means increased from 0.19% (control) to 0.31% (WL) in Experiment 1 and from 0.61% to 0.97% in Experiment 2. Isoflavones under WL were highly heritable, particularly F (H 2 =95%). The proportions of BA, G and F were little changed by WL, with strong positive correlations between free-drained and waterlogged treatments. Isoflavone contents were not related to WL tolerance, as assessed by shoot relative growth rate. In conclusion, isoflavones varied among genotypes and increased with WL, but the proportion of individual isoflavones in each genotype was stable. High F under WL was unrelated with genotype tolerance to WL. Instead, it was a consequence of inherently high F for that particular genotype.

The effects of calcium fertilization on morphological and physio-biochemical characteristics in peanut seedlings under waterlogging stress

Peanut is vulnerable under waterlogging stress, and it is important to explore efficient agronomic practices to reduce adverse effects induced by waterlogging stress. In this study, the effects of waterlogging stress on plant morphology, physiological and biochemical characters in peanut seedlings were studied. It was founded waterlogging stress posted adverse effects on plant growth and development and triggered the activities of antioxidant enzymes and osmotic adjustment substances to improve the plant tolerance under stress. It was also found that exogenous calcium fertilization could significantly improved root growth and development under stress. Moreover, higher dose of calcium fertilizer (1600 mg/kg) showed better performance on improving waterlogging tolerance than lower dose one (800 mg/kg) in peanut seedlings. This study explored positive effects of exogenous calcium on recovering damages especially in roots caused by waterlogging stress, providing a theoretical guidance in agronomic practice to improve waterlogging tolerance, and laying a foundation for agronomic practice when further discovering molecular mechanisms in response to waterlogging stress.

Genome-wide association scan and transcriptome analysis reveal candidate genes for waterlogging tolerance in cultivated barley.

Waterlogging is the primary abiotic factor that destabilizes the yield and quality of barley (Hordeum vulgare L.). However, the genetic basis of waterlogging tolerance remains poorly understood. In this study, we conducted a genome-wide association study (GWAS) by involving 106,131 single-nucleotide polymorphisms (SNPs) with a waterlogging score (WLS) of 250 barley accessions in two years. Out of 72 SNPs that were found to be associated with WLS, 34 were detected in at least two environments. We further performed the transcriptome analysis in root samples from TX9425 (waterlogging tolerant) and Franklin (waterlogging sensitive), resulting in the identification of 5,693 and 8,462 differentially expressed genes (DEGs) in these genotypes, respectively. The identified DEGs included various transcription factor (TF) genes, primarily including AP2/ERF, bZIP and MYB. By combining GWAS and RNA-seq, we identified 27 candidate genes associated with waterlogging, of which three TFs (HvDnaJ, HvMADS and HvERF1) were detected in multiple treatments. Moreover, by overexpressing barley HvERF1 in Arabidopsis, the transgenic lines were detected with enhanced waterlogging tolerance. Altogether, our results provide new insights into the genetic mechanisms of waterlogging, which have implications in the molecular breeding of waterlogging-tolerant barley varieties.

Exogenous treatment with melatonin enhances waterlogging tolerance of kiwifruit plants.

Waterlogging stress has an enormous negative impact on the kiwifruit yield and quality. The protective role of exogenous melatonin on water stress has been widely studied, especially in drought stress. However, the research on melatonin-induced waterlogging tolerance is scarce. Here, we found that treatment with exogenous melatonin could effectively alleviate the damage on kiwifruit plants in response to waterlogging treatment. This was accompanied by higher antioxidant activity and lower ROS accumulation in kiwifruit roots during stress period. The detection of changes in amino acid levels of kiwifruit roots during waterlogging stress showed a possible interaction between melatonin and amino acid metabolism, which promoted the tolerance of kiwifruit plants to waterlogging. The higher levels of GABA and Pro in the roots of melatonin-treated kiwifruit plants partly contributed to their improved waterlogging tolerance. In addition, some plant hormones were also involved in the melatonin-mediated waterlogging tolerance, such as the enhancement of ACC accumulation. This study discussed the melatonin-mediated water stress tolerance of plants from the perspective of amino acid metabolism for the first time.

Breeding of an epoch-making wheat cultivar “Kinuakari” for Japanese white salted noodle with high yield, high quality, good taste and excellent waterlogging tolerance

Breeding of an epoch-making wheat cultivar “Kinuakari” for Japanese white salted noodle with high yield, high quality, good taste and excellent waterlogging tolerance