Water resources are essential for the ecological system and the development of civilization. Water is imperative factor for health preservation and sustaining various human activities, including industrial production, agriculture, and daily life. Remote sensing provides a cost-effective and practical means to detect and monitor water bodies, offers valuable insights into the impact of climatic events on water structures, especially in coastal lake regions. The research primarily utilizes Landsat-9 OLI-2 satellite images to evaluate the effectiveness of various water indices (WRI, NWI, MNDWI, NDWI) in combination with global automatic thresholding methods (K-Means, Zhenzhou's, Adaptive, Intermodes, Prewitt and Mendelsohn's Minimum, Maximum Entropy, Median, Concavity, Percentile, Intermeans, Kittler and Illingworth's Minimum Error, Tsai's Moments, Otsu's, Huang's fuzzy, Triangle, Mean, IsoData, Li’s). The study was carried out on Lake Nazik, Lake Iznik, and Lake Beyşehir, which have unique geographical characteristics, and examined the adaptability and robustness of the selected indices and thresholding methods. MNDWI consistently stands out as a robust index for water extraction, delivering accurate results across different thresholding methods in regions all three lakes. As a result of quite extensive analysis, it is obtained that MNDWI and NDWI are reliable choices for water feature extraction in various lake environments, but the specific index should consider the thresholding method and unique lake characteristics. The Minimum thresholding method stands out as the most effective thresholding technique, demonstrating impressive results across different lakes. Specifically, it achieved an average Peak Signal-to-Noise Ratio (PSNR) of 78.97 and Structural Similarity Index (SSIM) of 99.37 for Lake Nazik, 74.08 PSNR and 98.34 SSIM for Lake Iznik, and 63.96 PSNR and 93.61 SSIM for Lake Beyşehir.