Water-filled Pore Space Research Articles

Temperature and moisture alter organic matter composition across soil fractions

Understanding the complex interplay of biotic and abiotic controls on soil organic carbon (SOC) stabilization and aggregate formation is a vital and evolving research field, with implications for C and climate change modeling. Here, we delve into the effects of temperature and moisture treatments on aggregate SOC composition. Aggregate fractions representing different levels of physical protection for SOC were isolated three times during a 6-month incubation with 2x2 factorial temperature and moisture treatments (22 or 30 °C, 45% or 65% water-filled pore space). The chemical composition within each fraction was analyzed using high-resolution Fourier-transform ion cyclotron resonance mass spectrometry (FTICR-MS) to evaluate the prevalence of different classes of C compounds by fraction and temperature and moisture treatments. In addition, a partial least square regression (PLSR) was used to explore potential correlations between relative abundance of C compound classes and C content within aggregate fractions. We found that organic matter in the macro- (>250 µm) and micro-aggregates (53 to 250 µm) was relatively enriched in lipid-, carbohydrates-, and protein--like compounds compared to silt and clay fractions (<53 µm). Organic matter in silt and clay was, on the other hand, relatively enriched in compounds with no specific classification, with overall high aromaticity. Broadly, simpler, low-molecular-weight C storage was altered by both temperature and moisture, while complex C storage was especially altered by moisture, within aggregates. Univariate effects of temperature and moisture on specific compound classes varied by soil fraction, but across fractions temperature increased the relative abundance of condensed- and unsaturated hydrocarbon-, tannin-, and amino sugar-like compounds and decreased the relative abundance of protein-like compounds. Moisture increased tannin-, condensed hydrocarbon-like compounds, and the overall aromaticity, and had the most pronounced effect in fractions occluded within macroaggregates, suggesting that substrate diffusion and pore connectivity within the aggregate environment drive the composition of C protected within aggregates. The PLSR indicated that treatments promoted different compounds to contribute to C accrual. Under dry conditions, condensed hydrocarbon-like compounds were associated with microaggregates, while amino sugar-like compounds were associated with macroaggregates and coarse particulate organic matter (POM), and lipid-like and aliphatic compounds were associated with silt and clay. Temperature effects on PLSR results were most visible in silt and clay fractions, where carbohydrate- and tannin-like compounds were associated with C content. This suggests that warmer conditions under climate change may more substantially alter mineral-associated C content, while changing water regimes will alter C content in physically protected environments, with the most significant changes under cool and moist conditions. Overall, our data reveal distinct resource pools in different climate and aggregate environments, a baseline for our understanding of SOC accrual and soil structure under different conditions. More research into how microbes process physically protected SOC under altered environments may fine-tune our ability to predict soil functions including water behavior and nutrient release.

Atmospheric Methane Consumption and Methanotroph Communities in West Siberian Boreal Upland Forest Ecosystems

Upland forest ecosystems are recognized as net sinks for atmospheric methane (CH4), one of the most impactful greenhouse gases. Biological methane uptake in these ecosystems occurs due to the activity of aerobic methanotrophic bacteria. Russia hosts one-fifth of the global forest area, with the most extensive forest landscapes located in West Siberia. Here, we report seasonal CH4 flux measurements conducted in 2018 in three types of stands in West Siberian middle taiga–Siberian pine, Aspen, and mixed forests. High rates of methane uptake of up to −0.184 mg CH4 m−2 h−1 were measured by a static chamber method, with an estimated total growing season consumption of 4.5 ± 0.5 kg CH4 ha−1. Forest type had little to no effect on methane fluxes within each season. Soil methane oxidation rate ranged from 0 to 8.1 ng CH4 gDW−1 h−1 and was negatively related to water-filled pore space. The microbial soil communities were dominated by the Alpha- and Gammaproteobacteria, Acidobacteriota and Actinobacteriota. The major group of 16S rRNA gene reads from methanotrophs belonged to uncultivated Beijerinckiaceae bacteria. Molecular identification of methanotrophs based on retrieval of the pmoA gene confirmed that Upland Soil Cluster Alpha was the major bacterial group responsible for CH4 oxidation.

Elevated carbon dioxide stimulates nitrous oxide emission in agricultural soils: A global meta-analysis

Elevated carbon dioxide (CO 2 ) (eCO 2 ) has been shown to affect the nitrous oxide (N 2 O) emission from terrestrial ecosystems by altering the interaction of plants, soils, and microorganisms. However, the impact of eCO 2 on the N 2 O emission from agricultural soils remains poorly understood. This meta-analysis summarizes the effect of eCO 2 on N 2 O emission in agricultural ecosystems and soil physiochemical and biological characteristics using 50 publications selected. The eCO 2 effect values, which equal to the percentage changes of N 2 O emission under eCO 2 , were calculated based on the natural logarithm of the response ratio to eCO 2 . We found that eCO 2 significantly increased N 2 O emission (by 44%), which varied depending on experimental conditions, agricultural practices, and soil properties. In addition, eCO 2 significantly increased soil water-filled pore space (by 6%), dissolved organic carbon content (by 11%), and nitrate nitrogen content (by 13%), but significantly reduced soil pH (by 1%). Moreover, eCO 2 significantly increased soil microbial biomass carbon (by 28%) and soil microbial biomass nitrogen (by 7%) contents. Additionally, eCO 2 significantly increased the abundances of ammonia-oxidizing bacteria (AOB) amoA (by 21%), nirK (by 15%), and nirS (by 15%), but did not affect the abundances of ammonia-oxidizing archaea (AOA) amoA and nosZ . Our findings indicate that eCO 2 substantially stimulates N 2 O emission in agroecosystems and highlight that optimization of nitrogen management and agronomic options might suppress this stimulation and aid in reducing greenhouse effect.

Sensitivity of soil respiration rate with respect to temperature, moisture and oxygen under freezing and thawing

In alpine environments, the decomposition rate of soil organic carbon (SOC) is controlled by several biotic and abiotic factors, which mostly change simultaneously and often lead to freezing and thawing cycles. However, it is highly uncertain whether the temperature sensitivity of decomposition around the freezing point of water is similar as in higher temperature ranges. In this study, we conducted a full factorial incubation experiment using soil samples from a grassland site in the Tibetan Plateau. A manipulative freeze-thaw cycle was imposed to these soils by continuously changing temperature, from −5 to 10 °C. Additional treatments included 4 levels of soil moisture at 15, 30, 60 and 90% of water-filled pore space (WFPS), and two levels of O2 concentration at 0 and 20%. We fitted the Arrhenius equation into the flux data to estimate the activation energy (Ea) and base flux rate (A) for each treatment level. Then, we predicted the dependence and sensitivity of decomposition rate (k) by implementing the Dual Arrhenius and Michaelis-Menten (DAMM) model using a Bayesian optimization approach. While soil temperature had the strongest control on SOC decomposition rate at all soil moisture and O2 levels, its intrinsic temperature sensitivity (Δk/ΔT) remained nearly constant across the entire temperature range except around 0 °C. We found that Ea was higher in nearly dry or anoxic conditions, suggesting that in these extremes more energy is required for microbial activity to take place. These intrinsic sensitivities revealed that temperature (energy) is the main factor that limits decomposition in cold environments provided that moisture and oxygen are sufficiently available. Intrinsic sensitivities with respect to soil moisture and oxygen concentration were only relevant at very narrow ranges, when soils were almost dry or partially anoxic, and small changes within these narrow ranges may lead to very strong changes in decomposition rates.

Contrasting effects of biochar- and organic fertilizer-amendment on community compositions of nitrifiers and denitrifiers in a wheat-maize rotation system

This research investigated the N2O fluxes and community compositions of nitrifiers and denitrifiers in a winter wheat-summer maize rotation system on the North China Plain. The experiment included three treatments: 1) a control treatment (CK); 2) biochar at 10.0 t ha–1 yr−1 (C); and 3) organic fertilizer at 7.5 t ha−1 yr−1 (M). The application of biochar reduced the cumulative N2O emissions by 47.7% and 62.2% in the maize and wheat seasons, respectively, compared with those of the CK treatment. Organic fertilizer increased the cumulative N2O emissions by 311.1% in the maize season and had no significant effects on them in the wheat season. Organic fertilizer reduced the cumulative N2O emissions by 39.8% in the nonfertilizer period of the maize season. The cumulative N2O emissions in the maize season accounted for 75.2–90.0% of the annual emissions among all the treatments. Biochar and organic fertilizer affected soil N2O emissions mainly by changing soil denitrifiers. In the maize season, the lower abundances of Candidatus Nitrosoarchaeum (AOA-amoA), Nitrosomonas (AOB-amoA), Mesorhizobium (nirK), Magnetospirillum (nirS) and Halomonas (nirS) may result in lower N2O emissions in the biochar treatment, and organic fertilizer had a similar influencing mechanism on N2O emissions during the nonbasic fertilizer and nontopdressing periods of the maize season. In the wheat season, the dominant genus Alicycliphilus (nosZ) was the major contributor to decreasing N2O emissions in the biochar treatment, while there was no biomarker related to N2O emissions in the M treatment. The soil pH, NO3−-N content and water-filled pore space (WFPS) were the key factors shifting the community compositions of nitrifiers and denitrifiers in this study. The application of biochar could be a better practice to improve saline-alkali soil with lower N2O emissions. These findings will improve our understanding of the nitrifiers and denitrifiers response to biochar and organic fertilizer.

The Effect of Multi-Years Reclaimed Water Irrigation on Dryland Carbon Sequestration in the North China Plain

Reclaimed water is an alternative water source which could alleviate the shortage of water resources in agricultural systems. Many researchers have studied the effect of reclaimed water on soil environment, crop yield, etc. However, carbon sequestration in reclaimed water irrigated agricultural systems is less studied. This study investigates methane uptake and photosynthesis in reclaimed water irrigation systems contributing to carbon sequestration estimation and analyzes the important factors impacting them. The results show that CH4 uptake is related to soil water-filled pore space (WFPS) with a quadratic and it has the highest uptake when WFPS is between 40 and 50%. Long-term reclaimed water irrigation could significantly decrease (p &lt; 0.05) CH4 uptake and macroaggregate stability in the topsoil. However, reclaimed water had no significant impact on photosynthesis in comparison. The type of fertilizer is an important factor which impacts CH4 emission from soil; urea had a lower CH4 uptake and a higher CO2 emission than slow-released fertilizer. Overall, reclaimed water irrigation could effectively decrease soil carbon sequestration. A soil wetted proportion level of 40–50% was recommended in this study for favorable methane oxidation. Slow-released fertilizer in reclaimed water irrigated agriculture could better control soil carbon emission and soil carbon absorption.

Effects of slow and fast pyrolysis biochar on N2O emissions and water availability of two soils with high water-filled pore space

Abstract Biochars, depending on the types of feedstocks and technological conditions of pyrolysis, can vary significantly in their properties and, therefore, it is difficult to predict biochar-induced effects on nitrous oxide (N2O) emissions from various soils, their physical properties and water availability. The objectives of this study were (1) to quantify effects of slow pyrolysis biochar (BC) and fast pyrolysis biochar (PYRO) on physical and hydro-physical properties of sandy soil (Haplic Arenosol) and clayey loam soil (Gleyic Fluvisol), and (2) to assess corresponding N2O emissions from these two soils. The study included a 63-day long laboratory investigation. Two doses of BC or PYRO (15 t ha−1 and 30 t ha−1) were applied to the soils in combination or without nitrogen fertilizer (NH4NO3, 90 kg N ha−1). The obtained results have shown a significant decrease in the bulk density of sandy soil after it was amended with either rate of BC or PYRO. Water retention capacity of the soils in all the treatments with BC or PYRO increased considerably although no changes was found in the soil water-filled pore space (WFPS) which was higher than 60%. BC was increasing N2O emission rates from the sandy soil treated with N fertilizer, and reducing N2O emission rates from the clayey loam soil treated with N fertilizer. PYRO was more efficient and was reducing N2O emissions from both fertilized soils, but for the sandy soil the reduction was statistically significant only at higher dose (30 t ha−1) of the biochar.

N2O hot moments were not driven by changes in nitrogen and carbon substrates or changes in N cycling functional genes

AbstractIf a dry soil is wetted it can produce a large flush of nitrous oxide (N2O), which can be 10 times above the background rate, this phenomenon is called a hot moment. However, there is uncertainty in the literature regarding the mechanisms that cause hot moments. Therefore, this study aimed to induce two different hot moments on soil cores to investigate changes in nitrogen (N) cycling functional genes, and correlate these changes with subsequent N2O emissions, and transformations in soil chemistry. We induced a ‘pre‐dry’ treatment which wetted soils from 50% to 90% water‐filled pore space (WFPS) and ‘pre‐wet’ treatment which wetted soils from 70% to 90% WFPS to analyse changes in gas fluxes (N2O, nitric oxide [NO] and carbon dioxide [CO2]), soil chemistry (pH, dissolved organic carbon [DOC], total oxidised nitrogen [TON], ammonium [NH4+]) and microbiology (bacterial 16S, fungal ITS and nitrogen cycling functional genes associated with denitrification). The soil produced emissions of N2O that were significantly higher for the pre‐dry treatment compared with the pre‐wet treatment (p = &lt;0.001; 9 times that of the pre‐wet). The pre‐dry treatments did not prime the soil any more than the pre‐wet treatments for CO2 and NO emissions, and the results showed that the soils TON and DOC concentrations were significantly higher in the pre‐wet conditions despite its lower N2O emissions. This suggests that the cause of the hot moment was not as dependant on the soil's substrate concentrations as previously thought. Moreover, the amount of denitrification genes in the pre‐dry soil was statistically similar to the pre‐wet (nirK, norB, nifH, nosZI, nxrA), apart from nirS which was marginally higher (p = 0.03). Contrary to other experiments, this study provides evidence that changes in soil substrates and functional gene abundance are not the cause of N2O hot moments. We therefore suggest that future studies should investigate changes in mRNA abundance related to N cycling genes.Highlights Rewetting following drought caused a significant release of N2O. The pre‐dry soil produced higher N2O fluxes but contained less key substrates (TOC, NH4+ and DOC) than the pre‐wet soil. The pre‐dry and pre‐wet soil had a similar quantity of denitrification functional genes. Differences in soil chemistry and denitrification functional genes between the pre‐dry and pre‐wet soil cannot explain the differences in N2O emissions.

Effects of crop residue incorporation and properties on combined soil gaseous N2O, NO, and NH3 emissions—A laboratory-based measurement approach

Crop residues may serve as a significant source of soil emissions of N2O and other trace gases. According to the emission factors (EFs) set by the Intergovernmental Panel on Climate Change (IPCC), N2O emission is proportional to the amount of N added by residues to the soil. However, the effects of crop residues on the source and sink strength of agroecosystems for trace gases are regulated by their properties, such as the C and N content; C/N ratio; lignin, cellulose, and soluble fractions; and residue humidity. In the present study, an automated dynamic chamber method was used in combination with soil mesocosms to simultaneously measure the effects of nine different crop residues (oilseed rape, winter wheat, field pea, maize, potato, mustard, red clover, sugar beet, and ryegrass) on soil respiration (CO2) and reactive N fluxes (N2O, NO, and NH3) at a high temporal resolution. Specifically, crop residues were incorporated in the 0–4 cm topsoil layer and incubated for 60 days at a constant temperature (15 °C) and water-filled pore space (60% WFPS). Residue incorporation immediately and sharply increased soil N2O and CO2 emissions, but these were short-lived and returned to background levels within respectively 10 and 30 days. The magnitude of increase in soil NO flux following residue incorporation was lower than that in CO2 and N2O fluxes, with peak emissions observed around day 20. Overall, the N content or C/N ratio of the applied residue could not sufficiently explain the variation in soil N2O and NO emissions. The range of the calculated N2O EFs over a 60-day period was −0.17 to +4.5, being wider than that proposed by the IPCC (+0.01 to +1.1). Therefore, the residue maturity stage may be used as a simple proxy to estimate the N2O + NO emissions from incorporated residue.

Combination of Compost and Mineral Fertilizers as an Option for Enhancing Maize (Zea mays L.) Yields and Mitigating Greenhouse Gas Emissions from a Nitisol in Ethiopia

Combined application of organic and mineral fertilizers has been proposed as a measure for sustainable yield intensification and mitigation of greenhouse gas (GHG) emissions. However, fertilizer effects strongly depend on the soil type and still no precise information is available for Nitisols in Ethiopia. The study evaluated effects of different ratios of biowaste compost and mineral fertilizers (consisting of nitrogen (N), phosphorus (P), and sulphur (S)) on maize (Zea mays L. Bako-hybrid) yields in a two-year field trial. Soil samples from each treatment of the field trial were used to estimate emissions of nitrous oxide (N2O), carbon dioxide (CO2), methane (CH4), and microbial activity in a 28-day incubation experiment with two moisture levels (40% and 75% water-filled pore space, WFPS). The application of fertilizers corresponded to a N supply of about 100 kg ha−1, whereby the pure application of mineral fertilizers (100 min) was gradually replaced by compost. Maize yields were increased by 12 to 18% (p &lt; 0.05) in the combined treatments of compost and mineral fertilizers compared to the 100 min treatment. The cumulative emissions of N2O and CO2 but not CH4 were affected by the fertilizer treatments and soil moisture levels (p &lt; 0.05). At 75% WFPS, the N2O emissions in the 100 min treatment was with 16.3 g ha−1 more than twice as high as the treatment with 100% compost (6.4 g ha−1) and also considerably higher than in the 50% compost treatment (9.4 g ha−1). The results suggest that a compost application accounting for 40 to 70% of the N supply in the fertilizer combinations can be suitable to increase maize yields as well as to mitigate GHG emissions from Nitisols in Southwestern Ethiopia.

Interactions between maize plants and nitrogen impact on soil profile dynamics and surface uptake of methane on a dryland farm

To determine the role of maize plants and their interaction with nitrogen (N) fertilizer in regulating subsoil methane (CH4) fluxes, we conducted a two-year field experiment on a semiarid farm in northwestern China. Four treatments were evaluated: unplanted soil without (C0) or with (CN) N fertilization and planted maize without (P0) or with (PN) N fertilization. Soil surface fluxes and profile dynamics of CH4 at depths of 0–50 cm in situ were monitored. The CH4 concentrations decreased with increasing soil depth. Seasonal and vertical variations in CH4 diffusive fluxes varied with maize phenology. The CH4 fluxes in the 0–20 cm layers accounted for 48.9–57.5% of the total fluxes in the 0–50 cm layers. The surface CH4 uptake was positively correlated with soil temperature during the fallow season and negatively correlated with soil water-filled pore space (WFPS) and exchangeable NH4+ concentration during the growing season. Compared with the unplanted treatments, the presence of maize plants significantly decreased soil WFPS and increased surface CH4 uptake during the growing season. The two-year mean cumulative diffusive CH4 fluxes were also significantly increased by 33.1–36.3% at depths of 10–30 cm and by 15.8–66.4% at depths of 10–40 cm in the P0 and PN treatments, respectively. Compared with the P0 treatment, the PN treatment significantly increased the surface CH4 uptake and cumulative CH4 uptake at depths of 0–40 cm in 2015. There was no significant difference in the CH4 surface and subsoil fluxes between the C0 and CN treatments. Our results suggested that N fertilization stimulated CH4 diffusion and uptake mainly by promoting maize growth and subsequently the soil water consumption on a dryland farm.

Nitrous Oxide Emission and Crop Yield in Arable Soil Amended with Bottom Ash

Bottom ash (BA), a byproduct of coal combustion from electric power plants with a porous surface texture and high pH, may influence the physical and chemical properties of upland arable soil associated with nitrous oxide (N2O) emission from upland soil. This study evaluated the use of BA in mitigating N2O emissions from upland arable soil and increasing the crop yield. In a field experiment, N2O emitted from the soil was monitored weekly in a closed chamber over a 2-year period (2018–2019). BA was applied to upland soil at the rates of 0, 200, and 400 Mg·ha−1. Cumulative N2O emission significantly decreased with increasing BA application rate; it decreased by 55% with a BA application rate of 400 Mg·ha−1 compared with the control. Yield-scaled N2O emission decreased with increasing BA application rates of up to 200 Mg·ha−1. Water-filled pore spaces (WFPS) were 70.2%, 52.9%, and 45.3% at the rates of 0, 200, and 400 Mg·ha−1, respectively, during the growing season. For economic viability and environmental conservation, we suggest that BA application at a rate of 200 Mg·ha−1 reduces N2O emissions per unit of crop production.

Nitrous oxide production and nitrogen transformations in a soil amended with biosolids

The application of organic amendments to agricultural soils enables the recycling of nutrients, further reducing the inputs of synthetic fertilizers for crop production. However, the production of N2O emissions is a concern that arises from such a practice. A 35 d incubation experiment was conducted with soils receiving three contrasting types of biosolids — mesophilic anaerobic digested (BM), composted (BC), and alkaline-stabilized (BA) — at four water-filled pore spaces (WFPS): 28%, 40%, 52%, and 64%. A zero-N-addition control was also evaluated. Across all the three types of biosolids, N2O production increased with soil moisture content, with BM and BC producing the overall highest N2O fluxes. The most intense pulses of N2O production were exhibited by BC at the beginning of the incubation. The highest cumulative N2O production was found with 64% WFPS and from BC- (409 μg N2O–N·kg−1 soil) or BM-amended soils (390 μgN2O–N·kg−1 soil), which produced more than four and two times the emissions from the control and BA-amended soils at 64% WFPS, respectively. We also found the highest nitrification rates in the BM- and BC-amended soils. The total N2O production was exponentially associated with the NO3−–N concentration present at the end of the experiment (R2 = 0.83). Changes in the concentration of the soil available N indicated the occurrence of mineralization, nitrification, and denitrification over the incubation. These results provided insight into the interacting responses of N2O production to soil moisture contents, biosolids treatment stabilization and properties, and soil N availability.

Effects of Long-Term Nitrogen Fertilization and Ground Water Level Changes on Soil CO2 Fluxes from Oil Palm Plantation on Tropical Peatland

A long-term study on the effect of nitrogen (N) fertilization on soil carbon dioxide (CO2) fluxes in tropical peatland was conducted to (1) quantify the annual CO2 emissions from an oil palm plantation under different N application rates and (2) evaluate the temporal effects of groundwater level (GWL) and water-filled pore space (WFPS) on soil organic carbon (SOC) and CO2 fluxes. Monthly measurement of soil CO2 fluxes using a closed chamber method was carried out from January 2010 until December 2013 and from January 2016 to December 2017 in an oil palm plantation on tropical peat in Sarawak, Malaysia. Besides the control (T1, without N fertilization), there were three N treatments: low N (T2, 31.1 kg N ha−1 year−1), moderate N (T3, 62.2 kg N ha−1 year−1), and high N (T4, 124.3 kg N ha−1 year−1). The annual CO2 emissions ranged from 7.7 ± 1.2 (mean ± SE) to 16.6 ± 1.0 t C ha−1 year−1, 9.8 ± 0.5 to 14.8 ± 1.4 t C ha−1 year−1, 10.5 ± 1.8 to 16.8 ± 0.6 t C ha−1 year−1, and 10.4 ± 1.8 to 17.1 ± 3.9 t C ha−1 year−1 for T1, T2, T3, and T4, respectively. Application of N fertilizer had no significant effect on annual cumulative CO2 emissions in each year (p = 0.448), which was probably due to the formation of large quantities of inorganic N when GWL was temporarily lowered from January 2010 to June 2010 (−80.9 to −103.4 cm below the peat surface), and partly due to low soil organic matter (SOM) quality. A negative relationship between GWL and CO2 fluxes (p &lt; 0.05) and a positive relationship between GWL and WFPS (p &lt; 0.001) were found only when the oil palm was young (2010 and 2011) (p &lt; 0.05), indicating that lowering of GWL increased CO2 fluxes and decreased WFPS when the oil palm was young. This was possibly due to the fact that parameters such as root activity might be more predominant than GWL in governing soil respiration in older oil palm plantations when GWL was maintained near or within the rooting zone (0–50 cm). This study highlights the importance of roots and WFPS over GWL in governing soil respiration in older oil palm plantations. A proper understanding of the interaction between the direct or indirect effect of root activity on CO2 fluxes and balancing its roles in nutrient and water management strategies is critical for sustainable use of tropical peatland.

N2O emissions from decomposing crop residues are strongly linked to their initial soluble fraction and early C mineralization

The emission of nitrous oxide (N2O), a strong greenhouse gas, during crop residue decomposition in the soil can offset the benefits of residue recycling. The IPCC inventory considers agricultural N2O emissions proportional to the amount of nitrogen (N) added by residues to soils. However, N2O involves several emission pathways driven directly by the form of N returned and indirectly by changes in the soil induced by decomposition. We investigated the decomposition factors related to N2O emissions under controlled conditions. Residues of sugar beet (SUB), wheat (WHT), rape seed (RAS), potato (POT), pea (PEA), mustard (MUS), red clover (RC), alfalfa (ALF), and miscanthus (MIS), varying by maturity at the time of collection, were incubated in two soils (GRI and SLU) at 15 °C with a water-filled pore space of 60%. The residues contained a wide proportion range of water-soluble components, components soluble in neutral detergent (SOL-NDS), hemicellulose, cellulose, and lignin. Their composition drastically influenced the dynamics of C mineralization and soil ammonium and nitrate and was correlated with N2O flux dynamics. The net cumulative N2O emitted after 60 days originated mostly from MUS (4828 ± 892 g N-N2O ha-1), SUB (2818 ± 314 g N-N2O ha-1) and RC (2567 ± 1245 g N-N2O ha-1); the other residue treatments had much lower emissions (<200 g N-N2O ha-1). For the first time N2O emissions could be explained only by the residue content in the SOL-NDS, according to an exponential relationship. Residues with a high SOL-NDS (>25% DM) were also non-senescent and promoted high N2O emissions (representing 1–5% of applied N), likely directly by nitrification and indirectly by denitrification in microbial hotspots. Crop residue quality appears to be valuable information for accurately predicting N2O emissions and objectively weighing their other potential benefits to agriculture and the environment.

Effects of white-rot fungal pretreatment of corn straw return on greenhouse gas emissions from the North China Plain soil

Straw-return with fungal treatment is a potential method for reducing soil greenhouse gas emissions through carbon (C) sequestration and N2O mitigation. However, there is little information on the effects of different fungal treatments of crop straw return on soil CO2 and N2O emissions. To explore to what extent decomposed corn straw and its components controls soil CO2 and N2O emissions, we set up three sequential incubation experiments using soil collected from the North China Plain, an intensive agricultural area. Interactions between the different C contents of corn straw (CS), CS pretreated with Irpex lacteus (ICS), CS pretreated with Phanerochaete chrysosporium (PCS) and different NO3−-N concentrations on the effect of soil CO2 and N2O emissions were conducted, and the kinetics of CO2 and N2O as influenced by changes in soil biochemical factors were analyzed. The effects of different lignocellulose components (lignin, cellulose, and xylan) on soil CO2 and N2O emissions were further studied.The results showed that straw pretreatment did not affect CO2 emissions. Both CO2 and N2O emissions increased when the C and N contents increased. However, applying PCS to 70% water-filled pore space soil effectively decreased the soil N2O emissions, by 41.8%–76.3% compared with adding the same level of CS. Moreover, extracellular enzyme activities related to C and N cycling were triggered, and the nosZI and nosZII abundances were significantly stimulated by the PCS application. These effects are closely related to the initial soluble C content of this treatment. Furthermore, adding xylan can significantly reduce N2O emissions.Overall, our data suggest that the environmentally beneficial effects of returning straw can be greatly enhanced by applying the straw-degrading white-rot fungi of P. chrysosporium in the North China Plain soil. Future studies are needed in the field to upscale this technology.

Improving the accuracy of nitrous oxide emission factors estimated for hotspots within dairy-grazed farms

Nitrous oxide (N2O) emissions from dairy-grazing pastures can be dominated by large emissions from small areas (‘hotspots’) frequently used by grazing dairy cattle (i.e., water troughs and gateways). N2O emissions from these hotspots are quantified by investigating whether N2O emissions and emission factors (% of applied N emitted as N2O, EF3) from potential hotspots are different from non-hotspots. To better characterise N2O emissions from hotspots and non-hotspots of farms to understand their contributions to national agricultural greenhouse gas inventory calculations, a series of measurements were conducted during winter and spring on two NZ typical dairy farms with contrasting soil drainage (poorly versus well drained). Before measurements were taken, the soils either received a cow urine application or remained untreated. The results showed that changes in water-filled pore space (WFPS) and mineral N around water troughs and gateways, due to additional stock movements and disproportionate excreta-N deposition during previous grazing events, affected both background and total N2O emissions. But there was little impact on EF3 values (calculated using IPCC guidelines) from deposited urine between hotspot and pasture areas. These results suggest the same EF3 values can be used for both to calculate emissions from urine deposited on grazed pastures. However, these results raise concerns about higher background emission in hotspots subtracted from measured emissions from urine-N deposition in calculating EF3 values and discounting the effects of disproportionate N inputs in intensive agriculture on increased background emissions (legacy effect). This IPCC inventory method does not account for the legacy effect of N loading prior to the measurements which may underestimate the emissions. Thus, an allowance for higher hotspot background emissions could be included in the Inventory to accurately estimate total emissions from agriculture.

Modelling soil salinity effects on salt water uptake and crop growth using a modified denitrification-decomposition model: A phytoremediation approach

Soil salinization is a widespread problem affecting global food production. Phytoremediation is emerging as a viable and cost-effective technology to reclaim salt-affected soil. However, its efficiency is not clear due to the uncertainty of plant responses in saline soils. The main objective of this paper is to propose a phytoremediation dynamic model (PDM) for salt-affected soil within the process-based biogeochemical denitrification-decomposition (DNDC) model. The PDM represents two salinity processes of phytoremediation: plant salt uptake and salt-affected biomass growth. The salt-soil-plant interaction is simulated as a coupled mass balance equation of water and salt plant uptake. The salt extraction ability by plant is a combination of salt uptake efficiency (F) and transpiration rate. For water filled pore space (WFPS), the statistical measures RMSE, MAE, and R2 during the calibration period are 2.57, 2.14, and 0.49, and they are 2.67, 2.34, and 0.56 during the validation period, respectively. For soil salinity, RMSE, MAE, and R2 during the calibration period are 0.02, 0.02, and 0.92, and 0.06, 0.04, and 0.68 during the validation period, respectively, which are reasonably good for further scenario analysis. Over the four years, cumulative salt uptake varied based on weather conditions. At the optimal salt uptake efficiency (F = 20), cumulative salt uptake from soil was 16–90% for alfalfa, 11–70% for barley, and 10–80% for spring wheat. While at the lowest salt uptake efficiency (F = 40), cumulative salt uptake was nearly zero for all crops. Although barley has the highest peak transpiration flux, alfalfa and spring wheat have greater cumulative salt uptake because their peak transpiration fluxes occurred more frequently than in barley. For salt-tolerant crops biomass growth depends on their threshold soil salinity which determines their ability to take up salt without affecting biomass growth. In order to phytoremediate salt-affected soil, salt-tolerant crops having longer duration of crop physiological stages should be used, but their phytoremediation effectiveness will depend on weather conditions and the soil environment.

Plants are a natural source of nitrous oxide even in field conditions as explained by 15N site preference

Plants are either recognized to produce nitrous oxide (N2O) or considered as a medium to transport soil-produced N2O. To date, it is not clear whether in their habitat plants conduit N2O produced in soil or are a natural source. We aimed to understand role of plants in N2O emissions in field conditions. Therefore, rubber plants (Ficus elastica) were planted in the field; then plant and soil chambers were deployed simultaneously to collect gas samples, and 15N site preference (SP) of N2O was evaluated. The mean SP values of plant and soil emitted N2O were −20.85 ± 2.8‰ and −8.85 ± 1.08‰, respectively, and were significantly different (p < 0.0001); while bulk 15N of plant and soil emitted N2O were −10.83 ± 3.33‰ and −22.56 ± 3.37‰, respectively and were similar (p = 0.06). In the current study, soil always acted as a source of N2O, while plants were both source and sink. Plant and soil N2O fluxes had significant positive exponential relationship with both soil and air temperature. Soil water-filled pore space (WFPS) had significant negative linear relationship with only soil N2O fluxes. Plant N2O fluxes had significant positive linear relationship with plant respiration rates and negative linear relationship with plant surface areas. Based on the relationship between plant respiration rates and N2O fluxes, we suggest that mitochondria are the possible sites of N2O formation in plant cells while the relationship between plant surface areas and N2O fluxes suggests that roots are the parts of its formation in natural and field conditions. Our results suggest that plants are a natural source of N2O even at field conditions and challenge a view that plants are a medium to transport soil-produced N2O into the atmosphere.

Precipitation changes regulate the annual methane uptake in a temperate desert steppe

Desert soils are an important sink of atmospheric methane (CH4) and regulate the global CH4 budget. However, it is still unclear how CH4 fluxes respond to precipitation changes in desert-steppe soils. Therefore, a two-year in situ control experiment was conducted to investigate the effect of precipitation changes on CH4 uptake in desert steppe of Inner Mongolia in northwest China and its driving mechanism. The result showed that this desert steppe was an important sink of CH4, with an annual uptake of 2.93 (2.64–3.22) kg C ha−1. It was found that CH4 uptake was reduced significantly for decreasing precipitation, especially in spring and summer. In contrast, an increasing trend of CH4 uptake was observed for increasing precipitation, although it was not statistically significant. Further analyses found that CH4 uptake was more sensitive to decreasing precipitation than increasing precipitation. This may be mainly due to the fact that only moderate water-filled pore space (WFPS) induced by precipitation promoted CH4 uptake, while too-high (>32%) or too-low WFPS inhibited its uptake. A structural equation model showed that the copy number of the pmoA functional gene was the most important factor affecting CH4 uptake. In contrast, soil moisture had a very important indirect effect on CH4 uptake, mainly through significantly affected soil porosity, the above-ground plant biomass and NO3−-N content, further affected CH4 uptake. Overall, CH4 sinks in desert steppe was still mainly controlled by methane-oxidizing bacteria containing the key functional gene pmoA and WFPS. Therefore, precipitation plays an important role in regulating the intensity of CH4 sinks in desert steppe, while it is worth noting that too-little precipitation will significantly weaken CH4 sinks.