Magnetic helicity, an intrinsic property of eruptive helical flux ropes (FRs) forming coronal mass ejections (CMEs), plays an important role in determining CME geoeffectiveness. In the solar atmosphere and heliosphere, helicity remains conserved in a closed volume. Considering this fact as a basis of our study, we perform a quantitative comparison between total magnetic helicity and twisted flux in interplanetary CMEs and those transported to CMEs via magnetic reconnection at low corona. At the source, twisted/poloidal flux (ϕpcme) of CMEs is directly estimated from total reconnection flux, and CME helicity (Hcme) is obtained by combining reconnection flux information with CME physical parameters. At 1 AU, the twisted/poloidal flux (ϕpmc) and helicity (Hmc) of CMEs are obtained from in situ observations. Considering uncertainties steaming from FR length, reconnection flux and CME physical parameter estimations, poloidal flux and helicity of CMEs at 1 AU are found to be highly relevant (ϕpmcϕpcme = 0.4–1.5, HmcHcme = 0.3–1) to low-corona magnetic reconnection at the wake of CMEs. This result remains unchanged despite CME association with pre-existing FRs. We show that a significant reduction in CME helicity during its heliospheric propagation may result from a high rate of FR erosion in the interplanetary medium. Our event analysis confirms that CME’s intrinsic magnetic properties are transported to CME FRs during magnetic reconnection at sheared coronal arcades. A one-to-one correspondence between the chirality of 1-AU CMEs and their pre-eruptive structures complies with the fact that the sense of field line rotations in FRs may remain unchanged during coronal reconnection at the source. By connecting intrinsic magnetic properties of FRs through Sun-Earth medium, this study provides important implications for the origin of geoeffectiveness in CMEs.