Herein, microwave dielectric ceramics of the Ba4Sm9.33Ti18O54 ceramics are substituted at A sites by partially replacing Sm at A1 sites with Ce, and the effects of ionic substitution at A sites on ceramic crystal structure and microwave dielectric properties are investigated. The Ba4(Sm1-xCex)9.33Ti18O54 (BSCT) ceramics prepared through the solid phase method has a typical tungsten–bronze structure, and its lattice spacing increases gradually with the increase in Ce content x. This increase is reflected in the increase in the cell volume and growth of ceramic grains. However, the excess Ce after Ce content exceeds 0.25 leads to the growth of ceramic grains and increase in porosity between grains, which in turn increases the dielectric loss of the ceramic. Under optimal sintering conditions, the ceramic crystal has a maximum atomic packing density of x = 0.25, which corresponds to its most stable structural properties, and the highest Q × f value of 9013 GHz. Raman spectroscopy results indicate that in titanium oxygen octahedrons, an increase in Ce substitution can effectively weaken the bending and tensile vibration intensities of titanium oxygen bonds, further enhancing structural strength.