Event Abstract Back to Event A simulation framework for acute extracellular recordings Philipp Meier1*, Felix Franke2, Espen Hagen3, Gaute T. Einevoll3 and Klaus H. Obermayer1 1 Berlin Institute of Technology, School for Electrical Engineering and Computer Science, Germany 2 ETH Zurich, D-BSSE, Switzerland 3 Norwegian University of Life Sciences, Dept. of Mathematical Sciences and Technology, Norway Extracellular recordings are a key tool to study the activity of neurons in vivo. Especially in the case of experiments with behaving animals, however, the procedure of electrode placement can take a considerable amount of expensive and restricted experimental time. Furthermore, due to tissue drifts and other sources of variability in the recording setup, the position of electrodes with respect to the neurons under study can change, causing degraded recording quality (non-stationarities). Here we devloped a simulation framework for acute extracellular recordings. Neurons and electrodes are modelled as objects in a spatio-temporal state space. A generative data model allows to construct putative voltage traces at electrode positions, as the superposition of time-and-distant-dependant characteristic waveforms of the simulated single neurons. All objects may be positioned arbitrarily during the simulation. This kind of framework allows to simulate acute experimental conditions and provides grounds to evaluate feedback-dependant algorithms (positioning systems, online/adaptive spikesorting). The simulated data was found to resemble data acquired from acute extracellular recordings from PFC of awake behaving maquace. Acknowledgements This work was supported by DFG GRK 1589/1 and the German Federal Ministry of Education and Research (BMBF) with the grants 01GQ0743 and 01GQ0410 and by the Research Council of Norway (eScience,NeuroNor). References K.H. Pettersen, H. Linden, A.M. Dale and G.T. Einevoll: Extracellular spikes and current-source density, in Handbook of Neural Activity Measurement, edited by R. Brette and A. Destexhe, Cambridge, to appear Franke F, Natora M, Meier P, Hagen E, Pettersen KH, Linden H, Einevoll GT, Obermayer K. (2010). An automated online positioning system and simulation environment for multi-electrodes in extracellular recordings. Conf Proc IEEE Eng Med Biol Soc. 2010;2010:593-7. Keywords: closed loop experiment, extracellular recording, forward simulation Conference: Bernstein Conference 2012, Munich, Germany, 12 Sep - 14 Sep, 2012. Presentation Type: Poster Topic: Data analysis, machine learning, neuroinformatics Citation: Meier P, Franke F, Hagen E, Einevoll GT and Obermayer KH (2012). A simulation framework for acute extracellular recordings. Front. Comput. Neurosci. Conference Abstract: Bernstein Conference 2012. doi: 10.3389/conf.fncom.2012.55.00015 Copyright: The abstracts in this collection have not been subject to any Frontiers peer review or checks, and are not endorsed by Frontiers. They are made available through the Frontiers publishing platform as a service to conference organizers and presenters. The copyright in the individual abstracts is owned by the author of each abstract or his/her employer unless otherwise stated. Each abstract, as well as the collection of abstracts, are published under a Creative Commons CC-BY 4.0 (attribution) licence (https://creativecommons.org/licenses/by/4.0/) and may thus be reproduced, translated, adapted and be the subject of derivative works provided the authors and Frontiers are attributed. For Frontiers’ terms and conditions please see https://www.frontiersin.org/legal/terms-and-conditions. Received: 21 Apr 2012; Published Online: 12 Sep 2012. * Correspondence: Mr. Philipp Meier, Berlin Institute of Technology, School for Electrical Engineering and Computer Science, Berlin, Germany, pmeier82@googlemail.com Login Required This action requires you to be registered with Frontiers and logged in. To register or login click here. Abstract Info Abstract The Authors in Frontiers Philipp Meier Felix Franke Espen Hagen Gaute T Einevoll Klaus H Obermayer Google Philipp Meier Felix Franke Espen Hagen Gaute T Einevoll Klaus H Obermayer Google Scholar Philipp Meier Felix Franke Espen Hagen Gaute T Einevoll Klaus H Obermayer PubMed Philipp Meier Felix Franke Espen Hagen Gaute T Einevoll Klaus H Obermayer Related Article in Frontiers Google Scholar PubMed Abstract Close Back to top Javascript is disabled. Please enable Javascript in your browser settings in order to see all the content on this page.
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