AbstractVapor–liquid phase equilibrium (VLE) plays a crucial role in chemical process design, process equipment control, and experimental process simulation. However, experimental acquisition of VLE data is a challenging and complex task. As an alternative to experimentation, VLE data prediction offers great convenience and utility. In this article, an artificial intelligence network is proposed to predict the temperature and the vapor phase composition of binary mixtures. We constructed a graph neural network (GNN) and designed an uncertainty‐aware learning and inference mechanism (UALF) in the prediction process. The model was tested on both a self‐constructed dataset and a publicly available dataset. The results demonstrate that the proposed method effectively reveals the phase equilibrium properties of the target data. This work presents a novel approach for predicting vapor–liquid phase equilibrium in binary systems and proposes innovative ideas for investigating phase equilibrium mechanisms and principles.