The problem of disturbed flow in the laminar boundary layer when heating elements are located on the surface is investigated. The flow is described by the theory of viscous-inviscid interaction with full Navier–Stokes equations. We apply the triple-deck model of the flow and describe asymptotic multiscale structure for the supersonic case. Using this structure as a base, we construct the solution to the flat stationary problem by means of Fourier transform and analysis in the complex plane. It is also shown that localization of a heating element may arrive at a singularity of the pressure downstream. Results of numerical and analytic analysis are presented. Using these elements gives us the opportunity to develop a novel method for the separation control of the boundary layer.