Obesity has become a global public health issue due to its rapidly increasing prevalence. Sea grapes powder drink (SPD) as a functional food has the potential to become an important biomarker in the improvement of obesity. The biomarkers in obesity can be assessed by Lee’s index and lipid profile. Due to its high antioxidant content, SPD can improve both Lee’s index and lipid profile. The objective of this study was to analyse the effect of SPD on the obesity biomarkers of Wistar rats. In this research, a completely randomized design that involved 24 male rats weighing between 150–250 g was used. Rats were randomly put into six groups. Biomarkers were measured using Lee’s index, lipid profile and the weight ratio of both visceral fat and liver. Results after 21 days of intervention showed a reduction in Lee’s index in the group that was given HFD + SPD 1 g, 1.5 g and 2 g. The visceral fat weight ratio in HFD + SPD 1.5 g and 2 g group significantly decreased. However, it had no effect on the liver weight ratio. Levels of Total Cholesterol (TC), Triglyceride (TG), and Cholesterol-Low Density Lipoprotein (CLDL) in the HFD + SPD 1 g, 1.5 g and 2 g group significantly decreased. The Cholesterol -High Density Lipoprotein (C-HDL) dramatically increased HFD + SPD 2 g group. SPD is effective in improving Lee's index, visceral fat weight ratio and lipid profile but not liver weight ratio. SPD can be used as an alternative therapeutic product in the management of obesity and consequent reduction of its prevalence.