In addition to the quality of the image, radiological protection of the patient must be considered to ensure an adequate diagnosis in dental radiology, especially in regard to those parts of the patient's body that are close to the radiation beam, such as the thyroid, salivary glands, and brain. In this work, the doses absorbed by the thyroid, salivary glands, eyes and brain of pediatric dental patients undergoing radiographic examinations are estimated using MCNP 6.2 coupled with virtual anthropomorphic phantoms, based on information from dental scenarios with a periapical X-ray unit. The absorbed doses were estimated for five- and 10-year-old male and female children. In the occlusal position, a higher absorbed dose to the thyroid was found for a five-year-old patient, whereas in the molar tube position, the brain was found to receive a higher absorbed dose for five- and 10-year-old patients. The results obtained here, expressed in terms of the absorbed dose, indicate that the beam direction and the use of different image acquisition techniques strongly influence the entrance dose values for the organs of interest in this study.