Abstract Incomplete HIV virologic suppression in the central nervous system (CNS) can cause persisting neurologic disorders even with suppressed plasma viremia. To better understand immune properties that support CNS virus persistence we characterized T cells and virus genotypes from cerebrospinal fluid (CSF) of HIV-infected participants to understand local cell trafficking behavior and the influence of combination antiretroviral therapy (ART). Compared to blood, CSF T cells expressed higher frequencies of CCR5****, CD69****, CX3CR1****, CD39**, and HLADR**(P values:*≤0.05, **≤0.01, ***≤0.001,****≤0.0001). Among CSF T cells, CD4 T cells were more likely to express CCR7****, CX3CR1****, and CD39**, and less likely to express CCR5*. CX3CR1 expression on CSF CD4 T cells correlated with CSF viral load (VL)*, whereas, CD39 expression mirrored CSF** and plasma VL*. In the absence of ART, CSF HIV (VL>900 copies/mL) shared majority sequence similarity to plasma virus demonstrating a migratory influence of susceptible cells into the CNS. However, CSF CD4 T cells from persons on ART expressed decreased CCR5**, CX3CR1****, HLADR****, and CD39***, regardless of viral suppression, while matched-PBMC CD4 T cells did not exhibit these trends. CSF CD4 T cells expressed features consistent with immune-restricted localization but with a migratory profile indicative of immune surveillance function and lymphoid trafficking. ART use associated with reduced migratory properties regardless of CNS viremia, suggesting ongoing CNS HIV replication under therapy involves local susceptible cells distinct from circulation. This CSF cellular profile could serve as a reference to target biomedical interventions that improve HIV suppression in the CNS.