Accurate time of arrival (TOA) detection is essential for successful wave and vibration-based structural health monitoring (SHM) system including Acoustic Emission (AE). AE is the foremost among passive wave-based monitoring systems. During high burst rate results, AE waves could overlap. Overlapping of AE waves leads to overlap in both time and frequency. As a result, the TOA information is lost in the coda of the previous wave and cannot be (reliably) detected by conventional techniques. To this end, ICD is introduced. ICD involves 3 cascaded systems a) (Overlapping) Identification b) (Overlap) Cleaning c) (Arrival) Detection. A novel 3D Fingerprint is meticulously designed to autogenously and injectively identify the overlapping waves. Positive identification activates the cleaning system which eradicates the influence of the Intersecting Wave using newly proposed adaptive spectral subtraction (ASpS). Then, TOA for the Intersected Wave was identified. The approaches were verified in controlled as well as source localization tests. The results from controlled study validate robustness in low IRR values for a wide range of waveform parameters. Finally, source localization results from laboratory testing confidently display the scientific applicability of the proposed system. This system could enhance detectability, reliability, and accuracy of a conventional system.