Background: Type 2 Diabetes Mellitus (T2DM) increases cardiovascular risk, but the mechanisms are incompletely understood. Blood metabolomic signatures are altered in T2DM, but the impact of ischemic stress on the local skeletal muscle signature and T2DM-related vascular dysfunction is unknown. Methods: We recruited 38 subjects (18 healthy, 20 T2DM), placed an antecubital intravenous catheter, and performed ipsilateral brachial artery reactivity testing. Blood samples for plasma metabolite profiling were obtained at baseline and upon cuff release after 5 minutes of ischemia. Brachial artery diameter was measured at baseline and 1 minute after cuff release. Results: As expected, flow-mediated vasodilation was attenuated in subjects with T2DM (p<0.01). We confirmed known T2DM-associated baseline differences in plasma metabolites, including homocysteine, dimethylguanidino valeric acid and β-alanine (all p<0.05). Metabolites were significantly altered in response to experimental ischemia. Ischemia-induced metabolite changes that differed between groups included 5-hydroxyindoleacetic acid (Healthy: -27%; T2DM +14%), orotic acid (Healthy: +5%; T2DM -7%), trimethylamine-N-oxide (Healthy: -51%; T2DM +0.2%), and glyoxylic acid (Healthy: +19%; T2DM -6%) (all p<0.05). Serine, betaine, aminoisobutyric acid and anthranilic acid associated with vessel diameter at baseline, but only in T2DM (all p<0.05). Metabolite responses to ischemia were significantly associated with vasodilation extent, but primarily observed in T2DM. Within T2DM subjects, metabolite changes predicting change in vessel diameter included enrichment in amino acid, glycerophospholipid and propanoate metabolism (all p<0.05). Conclusion: Our study highlights potential impairments in muscle and vascular signaling at rest and during ischemic stress in T2DM. While metabolites change in both healthy and T2DM subjects in response to ischemia, a relationship between muscle metabolism and vascular function is modified in T2DM, suggesting that dysregulated muscle metabolism in T2DM may have direct effects on vascular function.