The Salton Sea geothermal system (SSGS) is the site of active hydrothermal metamorphism and metallogenesis in the delta of the Colorado River, which partially fills the Salton Trough rift zone at the head of the Gulf of California. Growth of the delta across the rift has isolated the northern part of the Salton Trough since the Pleistocene, forming the evaporative Salton Sea basin whose sediments host the SSGS. More than 70 commercial geothermal wells, including a 3.2 km deep research borehole drilled as part of the Salton Sea Scientific Drilling Project (SSSDP), are yielding a wealth of new data from this system. Within the SSGS, active greenschist facies metamorphism is occuring at temperatures ⩽365°C at only 2–3 km depth, by reaction of Na Ca K Fe Mn Cl brines with the deltaic and lacustrine Pilo-Pleistocene sediments. Two kinds of base metal ore mineralization occur at depth: stratabound diagenetic Fe sulfides, and epigenetic vertical veins containing Fe Zn Cu Pb sulfides and Fex oxides. The vein mineralization occurs as two types: an older, reduced carbonate-sulfide assemblage, and a modern, oxidized, silicate-hematite-sulfide assemblage. The earlier assemblage formed at temperatures up to 100°C higher than the ambient temperatures measured in the wells today, implying that cooler, oxidized fluids have displaced hot, reduced fluids. A sharp interface between shallow fluids containing <12 wt % TDS and deep hypersaline brines containing 15–27 wt % TDS exists in the SSGS. The deeper hypersaline brines are rich in base metals (Fe ≅ 1500 ppm, Mn ≅ 1000 ppm, Zn ≅ 500 ppm) whereas the overlying lower-salinity fluids contain less than 100 ppm each of Fe, Mn and Zn. The modern silicate-hematite-sulfide vein assemblage is precipitating where the two fluids appear to be mixing. The two fluid types also have distincty different δ 18O and δD relations. The shallow lower-salinity fluids have only partially-exchanged oxygen with deltaic and lacustrine host rocls. The deep hypersaline brines have exchanged oxygen extensively at 250°C with the deltaic sediments. δD values of the hypersaline brines are typically lighter than either the lower-salinity fluids or the modern evaporating groundwaters occupying the Salton Trough, implying a different source for the original fluids. The high salinities of the geothermal brines are derived from a combination of evaporation of fossil lakewaters, groundwater dissolution of shallow lacustrine evaporites, and subsurface hydrothermal metamorphism of buried lacustrine evaporites. Episodic filling and desiccation of the closed Salton Sea basin has allowed cold saline brines to form and percolate down into the sedimentary section. In some wells anyhydrite meta-evaporites and interbedded solution collapse breccias occur at 1 km depth. The anyhydrite contains fluid inclusions that are saturated in halite at their homogenization temperatures of 300°C, recording the hydrothermal dissolution of bedded salt. Based on Sr and Pb isotopic data and whole-rock chemical data, the source of the metals in the hypersaline brines is from leaching of the host sediments. However, the origin of reduced S for ore mineralization remains an enigma. δ 34S values for vein sulfides cluster uniformly around zero per mil, implying that an isotopically-homogeneous source of reduced sulfide exists in the brines. It is possible that the vein sulfides receive a constribution from a magmatic S source. Movement and mixing of brines of different chemistry and oxidation states play a major role in ore genesis. Our model envisages an early stage in which a deep brine pool accumulated at depth in the sedimentary section by partial section by partial evaporation of basin and dissolution of bedded salts. Intrusion of rift-related basaltic magma into the base of the sedimentary caused heatingand fracturing of the sediments, resulting in precipitation of the carbonate-sulfide veins during pore fluid expulsion. Heating also caused a diapir of the hypersaline brine to rise and displace colder, less saline, shallower pore fluids. This brine intrusion was accompanied by pervasive and extensive mineralization. As this diapir cooled it began to move downward, drawing in shallow, more oxidized fluids and causing the formation of the modern silicate-hematite-sulfide vein ore zone.