With the escalating water scarcity in agriculture, a novel water-saving technique has emerged: drip irrigation with plastic film mulch (DI). Root function is crucial for sustaining rice production, and understanding its response to DI is essential. However, few studies have evaluated root systems in rice varietals and examined which kind of root system contributes to improving rice grain yield and water productivity in DI. If varietal differences of root reactions for water regimes were made clear, it might be more effective to find suitable varieties for DI and to improve grain yield in the DI system. To fill this knowledge gap, we conducted a two-year field experiment comparing two irrigation systems: continuous flooding (CF) and DI. We analyzed their effectiveness with four rice cultivars, including upland, F1 lowland, animal feed lowland, and lowland cultivars. Vertical root distribution, root bleeding rate, photosynthetic-associated parameters, water productivity, and yield performance were analyzed. In our study, the average grain yield of cultivars in the DI system (6.4 t/ha) was equivalent to those in the CF system (6.6 t/ha). The average water productivity under DI (0.34–0.75 kg m−3) demonstrated significant water-saving potential, saving approximately 35% of the total water supplied, resulting in higher water productivity compared to CF (0.27–0.51 kg m−3). Among the cultivars, the deep root weight of the upland cultivar significantly increased by 51% under DI compared to CF. The deep root ratio was positively correlated with the transpiration rate, grain yield, and water productivity, suggesting its contribution to high transpiration, thus maintaining a high carbon assimilation rate that results in high yield and water productivity. Therefore, deep roots are a notable trait corresponding to high yield under DI, and should be considered for the development of rice growth models for DI and the breeding of aerobic-adapted cultivars.
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