AbstractAquaplanet experiments are important tools for understanding and improving physical processes simulated by global models; yet, previous aquaplanet experiments largely differ in their representation of subseasonal tropical rainfall variability. This study presents results from aquaplanet experiments produced with the Model for Prediction Across Scales‐Atmosphere (MPAS‐A)—a community model specifically designed to study weather and climate in a common framework. The mean climate and tropical rainfall variability simulated by MPAS‐A with varying horizontal resolution were compared against results from a recent suite of aquaplanet experiments. This comparison shows that, regardless of horizontal resolution, MPAS‐A produces the expected mean climate of an aquaplanet framework with zonally symmetric but meridionally varying sea‐surface temperature. MPAS‐A, however, has a stronger signal of tropical rainfall variability driven by convectively coupled equatorial waves. Sensitivity experiments with different cumulus parameterizations, physics packages, and vertical grids consistently show the presence of those waves, especially equatorial Kelvin waves, in phase with lower‐tropospheric convergence. Other models do not capture such rainfall‐kinematics phasing. These results suggest that simulated tropical rainfall variability depends not only on the cumulus parameterization (as suggested by previous studies) but also on the coupling between physics and dynamics of climate and weather prediction models.