We describe an approach to partition a vertical profile of chlorophyll‐a concentration into contributions from two communities of phytoplankton: one (community 1) that resides principally in the turbulent mixed‐layer of the upper ocean and is observable through satellite visible radiometry; the other (community 2) residing below the mixed‐layer, in a stably stratified environment, hidden from the eyes of the satellite. The approach is tuned to a time‐series of profiles from a Biogeochemical‐Argo float in the northern Red Sea, selected as its location transitions from a deep mixed layer in winter (characteristic of vertically well‐mixed systems) to a shallow mixed layer in the summer with a deep chlorophyll‐a maximum (characteristic of vertically stratified systems). The approach is extended to reproduce profiles of particle backscattering, by deriving the chlorophyll‐specific backscattering coefficients of the two communities and a background coefficient assumed to be dominated by non‐algal particles in the region. Analysis of the float data reveals contrasting phenology of the two communities, with community 1 blooming in winter and 2 in summer, community 1 negatively correlated with epipelagic stratification, and 2 positively correlated. We observe a dynamic chlorophyll‐specific backscattering coefficient for community 1 (stable for community 2), positively correlated with light in the mixed‐layer, suggesting seasonal changes in photoacclimation and/or taxonomic composition within community 1. The approach has the potential for monitoring vertical changes in epipelagic biogeography and for combining satellite and ocean robotic data to yield a three‐dimensional view of phytoplankton distribution.
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