To improve the torque performance of the permanent magnet vernier machine in the direct-drive system for Unmanned Aerial Vehicle (UAV), this paper proposes the topology of non-uniform tooth distribution. This distribution, considering the additional flux harmonics, aims to contribute to torque improvement, whereas the cogging torque also increases at the same time. A phasors method is proposed to solve the issue caused by the non-uniform structure, adjusting the mechanic angle of each tooth reasonably to restrict the cogging torque. In addition, the non-uniform design is illustrated in detail, which includes the method of grouping the teeth, considering the factors of series pole ratio and winding layout. By using the three-dimensional finite element method, torque is significantly increased without additional torque ripple, which satisfies the desired design target.