Temporary Pools Research Articles

Integrating Population Genetics With Long-Term Environmental Monitoring to Evaluate and Guide Vernal Pool Creation for Amphibian Conservation.

The decline of biodiversity, particularly among amphibians, is strongly associated with habitat loss and fragmentation. Vernal pools are a critical ecosystem for many pool-breeding amphibians, but they are often overlooked in wetland protection guidelines. Mitigation efforts include vernal pool creation and restoration, but these efforts have varying success in replacing lost functions. This study investigates the success of created vernal pools through long-term environmental monitoring of wood frogs and spotted salamanders (2014-2023) and integrates population genetics to assess the local population health of the wood frog. First, we monitored and compared environmental parameters and reproductive success of indicator species between natural and created pools in a Pennsylvania state park. We then used microsatellite loci to assess within- and between-pool measures of genetic diversity, population structuring, and gene flow for wood frogs. We found two carefully designed created pools positively contributed to local amphibian population persistence by maintaining similar measures of genetic diversity as compared to natural pools. On the other hand, one poorly created pool was genetically distinct and acted as a population sink. Although our findings offer valuable insights, they are based on a limited sample and may not fully represent the broader landscape. However, by integrating genetic information into long-term monitoring datasets, our interdisciplinary approach enhances our understanding of amphibian population dynamics in vernal pool ecosystems. Our findings imply that the most important factors for restoration practitioners to consider when creating or restoring vernal pools are hydroperiod (12-35 weeks), volume (> 50 m3), depth (≥ 30 cm), and surrounding forest land cover (> 60%). These variables are better predictors of indicator species success than pool type (i.e., natural or created). Ultimately, this study emphasizes the need to accompany restoration efforts with long-term monitoring programs that can be used to make adaptive management decisions in an era of extreme environmental change.

The hydroperiod gradient drives species sorting in pace-of-life strategies but not in stressor sensitivity in Lestes damselfly larvae

Many species sort along environmental gradients, whereby species traits are predicted to shift as integrated sets of life-history, behavioural and physiological traits thereby making up a fast-to-slow pace-of-life continuum. This has also been predicted to cause species differences in stressor sensitivity along such gradients with a faster pace-of-life causing a higher sensitivity. We tested for predictable differences in pace-of-life and in stressor sensitivity for a set of four Lestes damselfly species that separate along the hydroperiod gradient. We reared in a common-garden experiment, larvae of two vernal pond specialists, L. dryas and L. barbarus, and two hydroperiod generalists, L. sponsa and L. virens, and exposed them to transient food deprivation and pesticide exposure, and monitored a set of life-history, behavioural and physiological traits both in the larvae and in the adults. Consistent with the time constraints imposed by the shorter hydroperiod of their habitat, the vernal pond specialists showed a faster pace-of-life (faster growth and development, and higher activity levels) than the hydroperiod generalists. Yet, in contrast with theory, this was not associated with a higher metabolic rate and a lower energy budget, neither with a higher oxidative damage to lipids. Both food deprivation and pesticide exposure were experienced as stressors, and species showed compensatory responses to cope with the transient food deprivation, including compensatory growth and delayed development. Nevertheless, the sensitivity to these stressors could not be predicted based on the difference in pace-of-life strategy between the vernal pond specialists and the hydroperiod generalists because of a decoupling of life-history and physiological traits. Our study indicates that while pace-of-life strategies change largely predictably along the hydroperiod gradient, these are not reliable predictors of species sensitivity to stressors. This highlights the need to consider also physiological traits to arrive at a generalizable predictive framework of species sensitivity to global change.

Dealing With Assumptions and Sampling Bias in the Estimation of Effective Population Size: A Case Study in an Amphibian Population.

Accurately estimating effective population size (N e) is essential for understanding evolutionary processes and guiding conservation efforts. This study investigates N e estimation methods in spatially structured populations using a population of moor frog (Rana arvalis) as a case study. We assessed the behaviour of N e estimates derived from the linkage disequilibrium (LD) method as we changed the spatial configuration of samples. Moor frog eggs were sampled from 25 breeding patches (i.e., separate vernal ponds, ditches or parts of larger fens) within a single population, revealing an isolation-by-distance pattern and a local spatial genetic structure. Varying buffer sizes around each patch were used to examine the impact of sampling window size on the estimation of effective number of breeders (N b). Our results indicate a downward bias in LD N b estimates with increasing buffer size, suggesting an underestimation of N b. The observed bias is attributed to LD resulting from including genetically divergent individuals (mixture-LD) confounding LD due to drift. This emphasises the significance of considering even subtle spatial genetic patterns. The implications of these findings are discussed, emphasising the need to account for spatial genetic structure to accurately assess population viability and inform conservation efforts. This study contributes to our understanding of the challenges associated with N e estimation in spatially structured populations and underscores the importance of refining methodologies to address population-specific spatial dynamics for effective conservation planning and management.

Restoration of Bedrock Vernal Pools for the Threatened Vernal Pool Fairy Shrimp in Central California

Restoration of Bedrock Vernal Pools for the Threatened Vernal Pool Fairy Shrimp in Central California

Determining Thresholds for Conservation of Vernal Pools

Determining Thresholds for Conservation of Vernal Pools

Goldstripe Darters (Etheostoma parvipinne) Spawn in Isolated Vernal Pools and Seepages in Alabama

Goldstripe Darters (Etheostoma parvipinne) Spawn in Isolated Vernal Pools and Seepages in Alabama

Environmental determinants of phylogenetic diversity in vernal pool habitats.

Phylogenetic diversity offers critical insights into the ecological dynamics shaping species composition and ecosystem function, thereby informing conservation strategies. Despite its recognized importance in ecosystem management, the assessment of phylogenetic diversity in endangered habitats, such as vernal pools, remains limited. Vernal pools, characterized by cyclical inundation and unique plant communities, present an ideal system for investigating the interplay between ecological factors and phylogenetic structure. This study aims to characterize the phylogenetic patterns of vernal pools and their associated vegetation zones, addressing questions about taxonomic and phylogenetic community discreteness, the role of flooding as a habitat filter, the influence of invasive species on phylogenetic structure, and the impact of seasonal variation on phylogenetic diversity. I find that zones-of-vegetation exhibit high between zone taxonomic and phylogenetic beta diversity whereas each zone forms a unique cluster, suggesting that zones are taxonomically and phylogenetically discrete units. Regions of high-inundation pressure exhibit phylogenetic clustering, indicating that flooding is a habitat filter in vernal pool habitats. Competition between native species conform to the 'competitive relatedness hypothesis' and, conversely, communities dominated by invasive Eurasian grass species are phylogenetically clustered. In addition, I find that phylogenetic diversity within zones fluctuates across the spring season in response to changing water levels, precipitation, and temperature. By analyzing three pools within the Merced Vernal Pool and Grassland Reserve, this research elucidates the phylogenetic dynamics of vernal pools. The findings underscore the need for tailored conservation strategies that account for the unique ecological characteristics of each vegetation zone within vernal pool habitats.

Mallomonas paraperfossa sp. nov. (Chrysophyceae, Synurales), a new species from the shallow ephemeral ponds in the steppe zone of the Southern Urals, Russia

This paper describes a new species of Mallomonas, discovered in small ephemeral waterbodies of the steppe zone of the Southern Urals (Russia). The species description is based on scale morphology studied using scanning and transmission electron microscopy. Mallomonas paraperfossa sp. nov. is most similar to M. perfossa from the section Pseudocoronatae. A comparison was also made with the species M. lelymene and M. sabulosa. The scales of M. paraperfossa are characterized by the presence of rimmed depressions and papillae, randomly located on the shield, and wide and raised anterior flanges with parallel, evenly spaced ribs.

Exploring the Adaptation of Bulinus senegalensis and Bulinus umbilicatus to the Dry and Rainy Season in Ephemeral Pond in Niakhar (Senegal), an Area of Seasonal Transmission of Urogenital Schistosomiasis.

Bulinus snails surviving drought play a key role in the seasonal transmission of urogenital schistosomiasis, although our knowledge of their adaptation to dry season is still limited. We investigated the survival dynamic and infestation by the Schistosoma haematobium of Bulinus snails during the dry and rainy seasons in a single pond in an area of seasonal schistosomiasis transmission in Senegal. During the rainy season, 98 (94.23%) B. senegalensis and six (5.76%) B. umbilicatus were collected, respectively. In the dry season, B. umbilicatus outnumbered B. senegalensis, but all five (100%) B. senegalensis collected were viable and alive after the interruption of aestivation by immersion in water, while only 7 of 24 (29.16%) B. umbilicatus collected emerged from their dormant state. The rate of infestation with S. haeamatobium during the rainy season was 18.2% (19/104), while all the viable snails collected during the dry season were negative. B. senegalensis and B. umbilicatus have different seasonal dynamics with no evidence of maintaining S. haematobium infestation during the drought. Further studies including more survey sites and taking account both snails biology and ecological conditions are needed to better understand snail adaptation to seasonal changes and their ability to maintain S. haeamatobium infestation during drought.

Salt pollution reduces turbidity, dissolved organic matter, and cyanobacteria in experimental vernal pool communities

Anthropogenic activities such as the over-application of road deicers are causing an increase in the concentration of salts in historically fresh waters. Experimental and field investigations demonstrate that freshwater salinization disrupts ecosystem functions and services, causing the death of freshwater organisms and changes to nutrient conditions. Wetland habitats are one system negatively affected by salt pollution, including ephemeral wetlands (vernal pools) that fill with salt-polluted water after snowmelt. In urbanized areas, the degradation of these ecosystems could result in irreversible ecological damage including reduced water quality and a reduction in biodiversity. To investigate the effects of freshwater salinization on vernal pool communities, we exposed soils from vernal pools to water containing no salt (control), or four concentrations of three salts standardized by chloride concentration (50 mg Cl− L−1, 100 mg Cl− L−1, 200 mg Cl− L−1, and 400 mg Cl− L−1; magnesium chloride, calcium chloride, and sodium chloride). The results of this experiment suggest that emerging zooplankton communities in vernal pools are sensitive to low concentrations of salt pollution, and that alternative salts such as magnesium chloride and calcium chloride are more toxic than sodium chloride. We did not find positive or negative changes in the abundance of eukaryotic phytoplankton but did find negative effects of salt on cyanobacteria abundance, possibly due to corresponding reductions in turbidity which might be needed as a fixation site for cyanobacteria to form heterocysts. Finally, we found that salt pollution likely caused flocculation of Dissolved Organic Matter (DOM), resulting in reduced concentrations of DOM which could alter the buffering capacity of freshwater systems, light attenuation, and the populations of planktonic heterotrophs.

A probabilistic approach to chronic effects assessments for listed species in a vernal pool case study.

Ecological risk assessments for potential pesticide impacts on species listed as threatened or endangered must ensure that decisions to grant registration or establish water quality standards will not jeopardize species or their critical habitats. Pesticides are designed to affect pest species via physiological pathways that may be shared by some nontarget species for which toxicity data are usually unavailable, creating a need for robust methods to estimate acute and chronic toxicity with minimal data. We used a unique probabilistic approach to estimate the risk of chronic effects of two organophosphate (OP) pesticides on the vernal pool fairy shrimp Branchinecta lynchi. Acute toxicity estimates were derived from Monte Carlo (MC) sampling of acute toxicity distributions developed from interspecies relationships using surrogate species. Within each MC draw, acute values were divided by an acute to chronic ratio (ACR) sampled from a distribution of ACRs for OP pesticides and invertebrates, producing a distribution of chronic effects concentrations. The estimated exposure concentrations (EECs) were sampled from distributions representing different environmental conditions. Risk was characterized using probability distributions of acute toxicity, ACRs, and EECs in a probabilistic analysis, as well as partial probabilistic variations that used only some distributions whereas some variables were used deterministically. A deterministic risk quotient (RQ) was compared with the results of probabilistic methods to compare the approaches. Risk varied across exposure scenarios and the number of variables that were handled probabilistically, increasing as the number of variables drawn from distributions increased. The magnitude of RQs was not correlated with the probability that EECs would exceed chronic thresholds, and comparison of the two approaches demonstrates the limited interpretability of RQs. Our novel probabilistic approach to estimating chronic risk with minimal data incorporates uncertainty underlying both exposure and effects assessments for listed species. Integr Environ Assess Manag 2024;20:1654-1666. Published 2024. This article is a U.S. Government work and is in the public domain in the USA.

Quantitative macroinvertebrate bioassessment in seasonally astatic aquatic habitats, Part II. Applying the method.

Seasonally astatic aquatic habitats are important ecologically, municipally, and agriculturally. Regulatory agencies and conservation organizations have developed various plans for protecting or constructing temporary wetlands, resulting in habitat monitoring requirements, particularly as relates to restoration and constructed habitats. Unfortunately, there has been no effort to develop a unified, consistent method for wetland biological monitoring. In Part I, we presented a quantifiable, replicable method for assessing seasonally astatic wetlands, which would allow for direct comparison between individual wetlands, wetland sites, and wetland types. Here in Part II, we apply the method and present the results from more than a decade of a data on two disparate sites that support California vernal pool habitats. These habitats include natural, restored, and constructed vernal pools. Our results demonstrate that the method we present yields reliable, statistically useful, and actionable data and provides a better method for assessing astatic wetland ecological health and the persistence of federally listed vernal pool crustaceans than other methods so far employed.

The use of 18S rRNA for identification of the first record of Tadpole Shrimp Lepidurus apus (Linnaeus, 1758) from Jordan

Abstract. Abushattal S, Alnasarat H, Alnaimat SM, Eid E. 2024. The use of 18S rRNA for identification of the first record of Tadpole Shrimp Lepidurus apus (Linnaeus, 1758) from Jordan. Biodiversitas 25: 1223-1229. The tadpole shrimps are living fossils that survive in temporary water pools and are considered benthic organisms that swim and feed on tiny organisms. Two genera of tadpole shrimps exist worldwide: Triops and Lepidurus, which share similar ecological niches and habitats but never coincide. The occurrence of the tadpole shrimp Lepidurus apus in Jordan was confirmed for the first time using the 18S rRNA Gene-Based PCR Assay. The experimental approach encompassed the amplification of biological specimens utilizing a universal amplicon measuring approximately 1,500 base pairs (bp), specifically targeting the 18S ribosomal RNA (rRNA) gene. Subsequently, the acquired sequences underwent scrutiny through BlastN search against the GenBank database for validation and comparative analysis. Genetic analysis was needed to define the species accurately, especially with tadpole shrimp's generally high morphological variability. This species was recorded in a temporary freshwater pool in the desert of Al-Jafr in Ma’an governorate in southern Jordan. The DNA analysis showed a 100% identical sequence of the 18S rRNA gene with Lepidurus apus sequences. This record is important due to the ecological role of the tadpole shrimps as filter feeders, consuming algae, bacteria, and other small particles of organic matter, and as a food source for various fish, birds, and other aquatic animals. In addition, it will pave the way for future research to identify its economic importance, such as its role in mosquito control and its potential role in aquaculture. Finally, tadpole shrimp are sensitive to environmental changes and could be used to indicate climatic changes and habitat degradation. This is mainly due to their sensitivity to changes in water quality, including temperature, pH, and chemical composition, and their niche requirements for survival and reproduction. In addition, monitoring tadpole shrimp distribution and comparing it with historical records can reveal patterns of climate-induced range shifts.

An independent origin of an annual life cycle in a North American killifish species

Abstract An annual life cycle is characterized by short-lived adults that exploit seasonally productive but temporary habitats, paired with a hardy embryo stage that survives unfavourable environmental conditions, such as winter or the dry season. This life cycle is rare amongst vertebrates but has evolved independently several times in African and South American killifishes adapted to life in seasonally ephemeral aquatic pools. A single species of North American annual killifish, with a limited geographical distribution in Mexico, also exhibits this seasonal life cycle. This enigmatic species, Millerichthys robustus, is geographically separated from the nearest South American annual killifish species by >2000 km. Millerichthys robustus exhibits morphological features that have led to several competing phylogenetic hypotheses. To date, its phylogenetic relationships are unclear because no molecular data have been available. Here, we sequence the mitochondrial genome of Millerichthys robustus and generate a molecular phylogeny of killifishes that includes this species. Our results indicate that, rather than being most closely related to South American annual killifishes, this species is sister to two non-annual killifish species from Cuba (Rivulus cylindraceus and Rivulus berovidesi). Ancestral state reconstruction strongly supports an independent origin of an annual life cycle and embryonic diapause in Millerichthys robustus.

Stable Isotopes Constrain Water Seepage From Gnammas Into Bare Granitic Bedrock

AbstractSubtle bedrock depressions called gnammas allow the water in ephemeral pools to maintain contact with bare rock, thus serving as natural rock‐weathering experiments. Following filling by precipitation, evaporation is often assumed to be the sole process of water loss from gnammas. We evaluated this assumption by monitoring evolving stable isotope compositions of gnamma waters hosted in granite of Colorado's Front Range. Surprisingly, we found that a significant fraction of the water was lost by seepage through the underlying bedrock. Seepage dominated, with only 10%–20% loss by evaporation. We propose a conceptual model of gnamma formation in which enhanced weathering of the bedrock beneath the gnamma increases the water holding capacity and permeability of the underlying rock that in turn promotes efficient water loss through seepage and further weathering of the surrounding rock. This model has implications for bare‐rock weathering and hence the evolution of landscapes over geologic timescales.

Distribution of Macrozoobenthos of Flowing Water Bodies by Altitudinal Belts of the Nakhchivan Autonomous Republic

Spatial distribution, species structure and ecological indicators of macrozoobenthos of flowing water bodies by altitude belts of Nakhchivan Autonomous Republic were studied. Macrobenthos fauna of the rivers of the region is formed in psammoreophilic, phytoreophilic and peloreophilic biocenoses with a great advantage of lithoreophilic biocenosis. The lithoreophilic biocenosis of rivers of the mountain and high-mountain belts is characterized by extensive area and abundance of species diversity. The core of the lithoreophilic biocenosis is composed of populations of rheophilic organisms such as moths, mayflies, vernal pools and simulids; its usual inhabitants are also rheophilic larvae of chironomids of the genus Polypedilum, Endochironomus, Eukiefferiella, Cricotopus and Orthocladius. The family composition of the fauna was found to be relatively stable along the rivers. Differences in the species composition of macrobenthos fauna, change of dominant species in biocenoses are related to biological features of the main species, anthropic and anthropogenic impacts, as well as different time of research. The species composition of macrozoobenthos of the rivers of the autonomous republic decreases from the source to the mouth.

Temporal variation and spatial factors affecting zooplankton communities in freshwater rock pools

Most ecological studies have focused on one snapshot in a single location and the same taxonomic group. However, relatively few studies have explored different taxonomic groups over multiple periods, particularly in ephemeral Neotropical ecosystems. This study investigates the seasonal dynamics of zooplankton communities and their responses to environmental variables in temporary pools in the Seasonally Dry Forest Ecosystem, Pernambuco, Brazil. We examined the seasonal fluctuations in species abundance, diversity, and evenness of Cladocera, Copepoda, and Rotifera in five temporary rock pools. Although these pools are meters apart, they vary considerably in size and drought sensitivity, leading to distinct seasonal dynamics mediated by water availability. We asked (i) how do species abundance, diversity, and evenness vary seasonally? (ii) Do these seasonal shifts differ between Cladocera, Copepoda, and Rotifera? And (iii) How do water environmental variables and spatial distance of pools influence zooplankton species composition? We hypothesized that Cladocera and Copepoda are positively affected by the rainy season, but Rotifera is mostly common in the dry season. Our findings underscore seasonality as the primary driver influencing the abundance and composition of zooplankton communities. We observed higher abundance of Cladocera and Rotifera during the post-rainy season, but Copepoda was dominant in the rainy season, leading to a strong seasonal variation in species evenness. These differences among groups highlight the importance of considering biological differences when understanding the ecological drivers of temporary freshwater ecosystems.

Some Eristic and Metric Traits of Eulimnadia michaeli (Order Spinicaudata; Family Limnadiidae): First Report from Vernal Pool of Karachi, Pakistan

Some Eristic and Metric Traits of Eulimnadia michaeli (Order Spinicaudata; Family Limnadiidae): First Report from Vernal Pool of Karachi, Pakistan

Pre‐loved home: Egg clutches of the striped marsh frog, Limnodynastes peronii, detected in water‐filled burrows created by the hunter hairy crayfish, Cherax setosus

AbstractMany animals create their own microhabitats that are not naturally present in the environment, such as nests and burrows, which are extended phenotypes that perform tasks related to survival and reproduction. Animals may be able to avoid the costs of implementing their own extended phenotypes by exploiting those already created by other species, including structures that are not actively in use or abandoned. Herein, we report on the striped marsh frog, Limnodynastes peronii, from Australia utilizing crayfish burrows for depositing their egg clutches. Field observations revealed large numbers of recently hatched L. peronii tadpoles in two flooded burrows likely created by the hunter hairy crayfish, Cherax setosus, near an ephemeral wetland pond on Kooragang Island, Australia that had partially dried. Our observations indicate that L. peronii may opportunistically exploit crayfish burrows which, when flooded, become suitable aquatic sites for breeding. These small waterbodies may provide fitness benefits to offspring, reducing exposure to aquatic predators found in naturally occurring aquatic systems but at the expense of increasing competition and cannibalism among confined siblings. These burrows may provide suitable microhabitat refuge during droughts, and breeding habitat for amphibians when other typical breeding habitats may not exist due to wetland drying. This is an example of an amphibian using an extended phenotype of a crustacean for the purposes of reproduction, revealing a unique interaction between these species that has not been reported.

Improvement of Soil Water Assessment Tool (SWAT) wetland module for modelling of ephemeral pond hydrology

AbstractEphemeral ponds (EPs) are seasonally flooded isolated wetlands that provide a variety of hydroecological benefits, including the provision of breeding habitat for several amphibian and invertebrate species. However, the lack of their explicit representation in hydrological models limits a comprehensive understanding of their interaction with surrounding landscapes and their vulnerability in the context of human interventions and climate change. The purpose of this research was to improve the isolated wetland module of the Soil Water Assessment Tool (SWAT) to better represent EP hydrology. The changes include (1) representation of groundwater and hypodermic flow as the only inflows from the pond drainage surface, due to the intermittent and negligible presence of inflow from surface runoff in forested ponds, (2) revision of how evapotranspiration within EPs is represented and (3) implementation of distinct volume‐area‐depth relationships for ponds based on their geometrical shape. The accuracy of these improvements was assessed against that of a previous isolated wetland formulation in replicating water depth observations of 10 EPs of a portion of the Kenauk forest (68 km2) in the Canadian Shield of the Outaouais region (Québec, Canada). The comparison results show that the revised SWAT model presented here significantly improves the distinct filling and drying water cycle of EPs (average root mean square error of 0.1 m of the revised model vs. 0.23 m for the original model). Besides, the new module allowed to identify that hypodermic flow, evapotranspiration and seepage to the underlying soil are the main EP source and sinks. The new module also allowed to explicitly quantify the differences in filling/drying pattern of the EPs of the Kenauk forest and unlike the original model structure, the new module was able to closely replicate the interannual variation of spring and annual hydroperiod duration.