Cold Seeps Research Articles

The Main Geohazards in the Russian Sector of the Arctic Ocean

The Arctic region, including vast shelf zones, has enormous resource and transport potential and is currently key to Russia’s strategic development. This region is promising and attractive for the intensification of global economic activity. When developing this region, it is very important to avoid emergency situations that could result in numerous negative environmental and socio-economic consequences. Therefore, when designing and constructing critical infrastructure facilities in the Arctic, it is necessary to conduct high-quality studies of potential geohazards. This paper reviews and summarizes the scattered information on the main geohazards in the Russian sector of the Arctic Ocean, such as earthquakes, underwater landslides, tsunamis, and focused fluid discharges (gas seeps), and discusses patterns of their spatial distribution and possible relationships with the geodynamic setting of the Arctic region. The study revealed that the main patterns of the mutual distribution of the main geohazards of the Russian sector of the Arctic seas are determined by both the modern geodynamic situation in the region and the history of the geodynamic evolution of the Arctic, namely the formation of the spreading axis and deep-sea basins of the Arctic Ocean. The high probability of the influence of seismotectonic activity on the state of subsea permafrost and massive methane release is emphasized. This review contributes toward better understanding and progress in the zoning of seismic and other geological hazards in the vast Arctic seas of Russia.

Methanochimaera problematica gen. nov., sp. nov., a novel methanoarchaeon isolated from cold seep sediment and reclassification of Methanomicrobium antiquum as Methanoeremita antiquus gen. nov., comb. nov.

A hydrogenotrophic methanoarchaeon, designated strain FWC-SCC4T, was isolated from cold seep sediment of Four-Way Closure Ridge, offshore southwestern Taiwan. Strain FWC-SCC4Tutilizes H2/CO2 or formate, but not acetate, secondary alcohols, methylamines, methanol or ethanol for growth and methane production. Yeast extract is required for growth. The cell morphology is coccoid, with a diameter of 0.8-1.2 µm, and the cell envelope is composed of S-layer protein with Mr about 137.00 kDa. Cells possess multiple flagella and usually occur singly. Strain FWC-SCC4T grows at a temperature range of 20-40 °C (optimum 37 °C) and a pH range of 5.4-7.2 (optimum 7.0). The NaCl range for growth is 0-0.86 M (optimum 0.09 M). The result of phylogenetic analysis of 16S rRNA gene sequences indicates that the most closely related species are Methanoplanus limicola M3T and Methanoplanus endosymbiosus MC1T, with similarities of 95.95 and 95.63%, respectively. The G+C content of the genomic DNA is 40.3 mol%. The overall genome-relatedness indexes (OGRIs) and concatenated ribosomal protein (RBP) phylogenic analysis indicate that strain FWC-SCC4T is a novel lineage of Methanomicrobiaceae. In addition to strain FWC-SCC4T, the differences between Methanomicrobium antiquum MobHT and Methanomicrobium mobile BPT demonstrated by comparative analysis of genomic G+C content and phylogenetic analysis with non-type strain genomes are enough to support the establishment of a novel genus. In conclusion, strain FWC-SCC4T (BCRC AR10058T= NBRC 114595T) is proposed as the type strain of Methanochimaera problematica gen. nov., sp. nov., and Methanoeremita antiquus gen. nov., comb. nov. is proposed as the new name for Methanomicrobium antiquum MobHT (=DSM 21220T= NBRC 104160T).

Microbial Communities in and Around the Siboglinid Tubeworms from the South Yungan East Ridge Cold Seep Offshore Southwestern Taiwan at the Northern South China Sea

Microbial Communities in and Around the Siboglinid Tubeworms from the South Yungan East Ridge Cold Seep Offshore Southwestern Taiwan at the Northern South China Sea

Performance analysis of heat pipe micro-reactor with Stirling engine based on full-scope multi-physics coupled simulation

Heat pipe micro-reactors (HPMRs) with Stirling engines for power conversion are emerging as a promising surface power technology. We developed a comprehensive multi-physics solver using the open-source finite-volume code OpenFOAM to perform high-fidelity analysis of HPMR systems’ steady-state and dynamic performance. The solver couples a 3D coarse-mesh multi-group neutron diffusion model with a 3D fine-mesh thermal conduction model using a mapping approach to accurately simulate multi-physics phenomena in the reactor core. Additionally, it integrates a 2D high-temperature heat pipe model as boundary conditions for heat transfer in the core, a 1D Stirling engine model for energy conversion, and a lumped parameter radiator model for heat dissipation. Applied to the HOMER-15 reactor system, the solver aided to identify the optimal working point of the system, achieving 3 kW of electric power with a conversion efficiency of 25.2 % under 20-Hz Stirling engine frequency and 3.34-MPa pressure. The transient full-scope simulation with the solver shows that the load-follow strategy based on gas charging and venting in Stirling engines is capable to accommodate 35 % step increase of external load. When the unexpected reactivity insertion is within 0.1$, the peak temperature in the reactor core is below the allowable limit temperature. Analysis of single failure of Stirling engines indicates that the system safety and reliability can be enhanced by either incorporating an appropriate number of engines or enhancing heat transfer between Stirling engine channels.

Methane seepage leads to a specific microplastic aging process in the simulated cold seep environment

Marine microplastics pose a significant threat to ecosystems, and deep-sea regions serve as critical sinks for these pollutants. Among these regions, cold seeps harbor relatively high concentrations of microplastics. However, research on the aging of microplastics under low-temperature, dark, methane-abundant, and high-pressure conditions remains limited. Seawater and sediment were collected from various Haima cold seepage sites to simulate seepage environments in 200-mL high-pressure reactors. Four types of microplastics at high concentrations (approximately 10 %) were cultured and monitored over two months to explore how they aged. The key findings are as follows: (1) Compared to areas of weak seepage, methane seepage accelerated microplastic aging, as evidenced by increased surface roughness, enhanced C-O and (CO)-O bond formation, increased microbial colonization, and reduced contact angles. (2) Microplastic aging is more pronounced in sediments than in seawater, with biodegradable polylactic acid (PLA) exhibiting the most significant aging characteristics and carbon contribution. (3) Aged microplastics induce greater disturbances in inorganic nutrient levels than in organic matter, impacting nitrogen cycle processes involving nitrate, nitrite, and ammonium. This study results reveal the fundamental aging characteristics of microplastics in extremely deep seas and highlight their potential ecological effects.

Simulation Study of Gas Seepage in Goaf Based on Fracture–Seepage Coupling Field

In order to solve the problem of gas overrun in the fully mechanized caving face and the upper corner of high gas and extra-thick coal seam, the fracture and caving process of the roof in the goaf is analyzed and studied by using the relevant theories of fracture mechanics and seepage mechanics. The mathematical model of fracture and caving of the immediate roof and main roof in the goaf is established. Combined with ANSYS Fluent 6.3.26, the seepage process of gas in coal and rock accumulation in the goaf under different ventilation modes is simulated. The distribution law of gas concentration in the goaf is obtained, and the application scope of different ventilation modes is determined. In addition, the influence of the tail roadway application and the wind speed size on the gas concentration in the goaf and the upper corner of the fully mechanized caving face is also explored. The results show that, affected by wind speed and rock porosity, along the strike of the goaf, about 30 m near the working face, the gas concentration is low and growth is slow. In the range of 30~160 m, the gas concentration increases rapidly and reaches a higher value. After 160 m, the gas concentration tends to be stable. Along with the tendency of the working face, the gas concentration in the goaf increases gradually from the inlet side to the return side, and the gas concentration increases noticeably near the return air roadway. Along the vertical direction of the goaf, the gas concentration gradually increases, and the concentration of the fracture zone basically reaches 100%. Different ventilation modes have different application scopes. The U-type ventilation mode is suitable for the scenario of less desorption gas in the coal seam, while U + I and U + L-type ventilation modes are suitable for the scenario of more desorption gas in coal seam or higher mining intensity. The application of the tail roadway can reduce the gas concentration in the upper corner to a certain extent, but it has limited influence on the overall gas concentration distribution in the goaf. In addition, when the wind speed of the working face should be controlled at 2.0~3.5 m/s, it is more conducive to the discharge of gas, the method of reducing the gas concentration in the upper corner by increasing the wind speed of the working face is more suitable for the case where the absolute gas emission of the fully mechanized caving face is low, and the effect is limited when the absolute gas emission is high. The above conclusions provide a reference for solving the problem of gas overrun in the goaf and the upper corner of a fully mechanized caving face.

Semi-automated analysis of faults with meter-scale displacements and networks of planar features using high-resolution 3D seismic to investigate gas leakage at the Vestnesa Ridge, eastern Fram Strait

We develop a semiautomated method for extracting faults and other planar features from two high-resolution (HR) seismic volumes in the eastern Fram Strait. We assess seismic data quality and resolution prior to structural interpretation to determine the appropriate processing workflow. This workflow, designed for HR data sets, identifies meter-scale (>3–4 m) faults and other planar features, picked up by subtle changes in the curvature and discontinuities of seismic reflections, to investigate their relationship with fluid migration in the shallow subsurface. Although evidence exists for Holocene (approximately <8 ka) fault-associated gas seepage, structures in both volumes are presently sealing. We assess structures based on those that have measurable throw (faults) and those that do not (planar features). Structures lacking measurable throw are significant because they appear to represent fluid flow pathways. This technique enhances the analysis of the geometries of the mapped structures, facilitating the interpretation of meter-scale fault throws and the orientations of planar features. We provide insights into the evolution of structures previously linked to episodes of fluid migration and gas leakage at the Vestnesa Ridge. We infer zones of dilation (i.e., opening) at locations where faults or networks of planar features interact and investigate how these structures influence localized uplift and shallowing of the interface between free gas and gas hydrate (i.e., the bottom-simulating reflection).

Identification and anticoagulant mechanisms of novel factor XIa inhibitory peptides by virtual screening of a in silico generated deep-sea peptide database

The objective of this study was to identify novel anticoagulant peptides from the deep-sea using multiple in silico methods, and to investigate their inhibitory activity and molecular mechanisms. A deep-sea peptide database was firstly constructed by performing virtual proteolysis on protein sequences from animals inhabiting deep-sea hydrothermal vents and cold seeps. Candidate anticoagulant peptides were identified through molecular docking and binding free energy screening against FXIa as the target. Two novel anticoagulant peptides, PRNIF (IC50 = 0.67 mM) and GNDRCL (IC50 = 1.52 mM), were identified, and their anticoagulant activities were verified in vitro. PRNIF was demonstrated to be a noncompetitive inhibitor of FXIa, and caused significant prolongation of thrombin time (TT) and activated partial thromboplastin time (APTT), whereas GNDRCL markedly prolonged the APTT only. Molecular dynamics simulations demonstrated considerable conformational shifts of both anticoagulant peptides when bound to the active sites of FXIa. The lowest energy binding poses of the FXIa-peptide complexes for PRNIF and GNDRCL exhibited comparable numbers of hydrogen bonds and binding free energies. However, occupancy analysis revealed completely distinct stability characteristics of the hydrogen bond interactions. The conserved residue Asp569 in the S1 pocket of FXIa formed strong and stable hydrogen bonds as well as a salt bridge with the arginine residues of PRNIF, which were not observed in the FXIa-GNDRCL complex. To our knowledge, PRNIF represented the first FXIa inhibitory peptide derived from the deep-sea, which may contribute to the development and utilization of deep-sea peptides resources. Two deep-sea peptides may potentially serve as an alternative food-derived ingredient that could be utilized for thrombosis prevention.

Three New Species of Deep-Sea Wood-Associated Sea Stars (Asteroidea: Caymanostellidae) from the Eastern Pacific

Caymanostellidae is a group of rarely collected and morphologically unusual sea stars that have been exclusively encountered on wood falls in the deep sea. There are currently three genera and seven species described, occurring in the Atlantic, Pacific and Indian Oceans with a depth range between 418 and 6780 m. Three new species are here described from specimens collected from wood falls in multiple localities across the Pacific margin of Costa Rica and near the Gulf of California (Mexico): Caymanostella scrippscognaticausa sp. nov., Caymanostella davidalani sp. nov. and Caymanostella loresae sp. nov. These records expand the known geographical distribution of caymanostellids and constitute their first report from wood falls found at methane seeps. This study also includes the first descriptions of early-stage juvenile caymanostellids and reveals that traits previously considered useful for diagnosis might represent intraspecific and ontogenetic variability, with important consequences for caymanostellid taxonomy.

Adsorption mechanism study of viscoelastic surfactants with various molecular structures on oil and gas reservoir rocks

As clean thickeners used in fracturing fluids or self-diverting acids, viscoelastic surfactants (VESs) have garnered increased attention for their unique properties. While VESs leave little residue, their adsorption on rocks can lead to adverse effects on oil and gas seepage. Herein, sandstone and limestone were utilized as adsorbents to examine a series of VESs with diverse molecular structures. The relationship between adsorption capacity and molecular structure was investigated, along with the impact of salinity and temperature on adsorption capacity through static and dynamic adsorption tests. Experiments were conducted at various temperatures (25 °C–100 °C) and different salinity levels (0–4 wt%) using sandstone and limestone as adsorbents. The wettability alteration caused by each VES solution was assessed to confirm the adsorption capacity of these VESs on sandstone and limestone. Scanning electron microscopy was employed to visually study the microscopic morphologies of rock surfaces after adsorption in VES solutions to investigate the adsorption characteristics. Owing to the differing charges between sandstone and limestone, the adsorption capacity of each VES varied. Cationic VESs tend to be absorbed by sandstone, while zwitterionic VESs are easily adsorbed by limestone. The increase in salinity considerably enhances the adsorption capacity of rocks, with a greater amplification on sandstone compared to limestone. Additionally, the adsorption capacity of cationic VESs on sandstone is highly sensitive to salinity owing to the ease with which their head groups are disrupted by ions. Rising temperatures can weaken adsorption capacity due to the breakdown of hydrogen bonding or van der Waals forces. The wettability changes caused by VES solutions on sandstone are more pronounced than on limestone. By combining experimental results, the mineral content of rocks, molecular structure characteristics of VESs, and adsorption-free energy, the adsorption mechanisms of various VESs with different molecular structures on rocks were examined. This research lays a theoretical foundation for optimizing VES molecular structures for the preparation of fracturing fluids or self-diverting acid.

Multi-scale reservoir response characteristics of coalbed methane development through stress relief via horizontal well cavity completion in tectonically deformed coals

China’s coalbed methane (CBM) resources hold significant potential. However, the widespread presence of soft and low-permeability tectonically deformed coal (TDC) presents a challenge to the efficient development of CBM. The development of CBM through stress relief via horizontal well cavity completion (HWCC) offers a promising innovative solution to this problem. To elucidate the multi-scale reservoir response characteristics of CBM development through stress relief via HWCC in TDCs, this article comprehensively employs particle discrete element and finite element numerical simulation methods, and carries out the numerical simulation studies of cyclic seepage at the specimen scale, HWCC at the coal seam scale, and CBM development at the coal seam group scale. The main findings are summarized as follows. Unlike the stress-compression specimens, which exhibited overall failure, the differential distribution of pressure gradients within the specimens during the gas seepage experiments resulted in the development of microcracks concentrated at the bottom of the specimens. With the escalation of coal body structural damage, the permeability stress compression coefficient during the elastic deformation stage shows an increasing trend. Upon entering the plastic deformation stage, the specimen’s permeability shifts from a decreasing to an increasing trend. Increasing the lower limit pressure ratio, upper limit pressure ratio, and cycle rate of gas injection pressure could accelerate the failure efficiency of the specimens. Increasing the lower limit pressure ratio has a more pronounced effect on the TDC specimens, while increasing the upper limit pressure ratio has a more significant impact on the primary undeformed and cataclastic coal specimens. In TDCs, the phenomenon of wellbore collapse and cavity expansion becomes more pronounced. The cavity volume tends to increase with the increase in the initial well diameter, in-situ stress, and alternating bottom-hole pressure differences. The HWCC could enhances reservoir permeability and production in both the cavity completed and adjacent coal seams. For two horizontal wells with cavity completions in the same layer, excessively close well spacing is unfavorable for fostering inter-well interference and reservoir pressure drop. When the HWCC is applied to thin coal seams, the enhancement of permeability and production is limited. Reasonable optimization of drainage rates could effectively mitigate the reservoir permeability velocity-sensitive damage. The research findings extend related theories and provide a robust reference for subsequent practical engineering applications.

Molecular and functional characterization of short peptidoglycan recognition proteins in Vesicomyidae clam

Within cold seep environments, the Vesicomyidae clam emerges as a prevalent species, distinguished by its symbiotic relationship with microorganisms housed within its organ gill. Given the extreme conditions and the symbiotic nature of this association, investigating the host's immune genes, particularly immune recognition receptors, is essential for understanding their role in facilitating host-symbiotic interactions. Three short peptidoglycan recognition proteins (PGRPs) were identified in the clam. AmPGRP-S1, -S2, and -S3 were found to possess conserved amidase binding sites and Zn2+ binding sites. Quantitative Real-time PCR (qRT-PCR) analysis revealed differential expression patterns among the PGRPs. AmPGRP-S1 and AmPGRP-S2 exhibited elevated expression levels in the gill, while AmPGRP-S3 displayed the highest expression in the adductor muscle. Functional experiments demonstrated that recombinant AmPGRP-S1, -S2, and -S3 (rAmPGRPs) exhibited binding capabilities to both L-PGN and D-PGN (peptidoglycan). Notably, rAmPGRP-S1 and -S2 possessed Zn2+-independent amidase activity, while rAmPGRP-S3 lacked this enzymatic function. rAmPGRPs were shown to bind to five different bacterial species. Among these, rAmPGRP-S1 inhibited Escherichia coli and Bacillus subtilis, while rAmPGRP-S2 and -S3 inhibited Bacillus subtilis in the absence of Zn2+. In the presence of Zn2+, rAmPGRP-S1 and -S2 exhibited enhanced inhibitory activity against Staphylococcus aureus or Bacillus subtilis. These findings suggest that AmPGRPs may play a pivotal role in mediating the interaction between the host and endosymbiotic bacteria, functioning as PGN and microbe receptors, antibacterial effectors, and regulators of host-microbe symbiosis. These results contribute to our understanding of the adaptive mechanisms of deep-sea organisms to the challenging cold seep environments.

The Enigmatic Pockmarks of the Sandy Southeastern North Sea

AbstractNatural seafloor depressions, known as pockmarks, are common subaqueous geomorphological features found from the deep ocean trenches to shallow lakes. Pockmarks can form rapidly or over millions of years and have a large variety of shapes created and maintained by a large variety of mechanisms. In the sandy sediments of the southeastern North Sea, abundant shallow pockmarks are ubiquitous and occur at shallow water depths (<50 m). Their formation has previously been linked to methane seepage from the seafloor. Here, we characterize over 50,000 pockmarks based on their morphology, geochemical signature, and the subsurface pre‐conditions using a new integrated geoscientific data set, combining geophysical and sedimentological data with geochemical porewater and oceanographic analysis. We test whether the methane seepage is indeed responsible for pockmark formation. However, our data suggest that neither the seepage of light hydrocarbons nor groundwater is driving pockmark formation. Because of this lack of evidence for fluid seepage, we favor the previously suggested biotic formation but also discuss positive feedback mechanisms in ocean bottom currents as a formation process. Based on a comparison of pockmarks to the central and southeastern North Sea, we find that local lithology significantly affects pockmark morphology. Muddy lithologies favor the formation of larger, long‐lived structures, while sandy lithologies lead to short‐lived, small‐scale structures that are large in area but with shallow incision depth. We conclude that pockmarks in sandy environments might have been overlooked globally due to their shallow incision depth and recommend reevaluating the role of hydrocarbon ebullition in pockmark formation.

Methane seepage activities in the Qiongdongnan Basin since MIS2

Gas hydrates are globally acknowledged as a significant strategic alternative energy source, and there is a consensus on the necessity to enhance their exploration. However, gas hydrates are highly prone to decomposition under variations in external environmental conditions, which can result in subsea methane seepage activities. Consequently, investigating subsea methane seepage activities holds substantial theoretical and practical significance for exploring gas hydrates. This paper evaluates the history of methane seepage activities in the Qiongdongnan Basin (QDNB) by analyzing the carbon and oxygen isotopic characteristics of benthic foraminifera and the geochemical properties of pore water from gravity sediment cores at sites QH-CL4 and QH-CL40. The results indicate that since the Marine isotope stage2 (MIS2), continuous micro-methane seepage activity has been present in the QDNB, characterized by a slight negative deviation in the carbon isotopes of benthic foraminifera. Methane seepage activity intensified during 14.6 ka BP and between 19.64–23.22 ka BP. This increase is thought to be associated with rising seawater temperature during the Bølling–Allerød interstadial and declining sea level during the Last Glacial Maximum, respectively. Moreover, current geochemical characteristics of pore water reveal strong methane seepage activity, with flux as high as 28.968 mmol·m-²·a-¹. This ongoing activity has led to gas hydrate formation within shallow layers while also causing negative deviations in pore water salinity.

The Control of Isolated Kerogen on Pore Structure and Heterogeneity in Marine-Continental Transitional Shale: A Case Study on the Taiyuan Formation, Northern Ordos Basin

Accurately determining the pore structure and heterogeneity characteristics of marine-continental transitional shale in the Taiyuan Formation is crucial for evaluating the shale gas resources in the northern Ordos Basin. However, the studies on pore characteristics and heterogeneity of marine-continental transitional shales and isolated kerogen are limited. This study collected Taiyuan Formation shale in the northern Ordos Basin, and corresponding kerogen isolated from shale and used N2 and CO2 adsorption experiment and Frenkel–Halsey–Hill and Volume-Specific Surface Area model to investigate the pore structure and heterogeneity of both. The results show that the isolated kerogen is dominated by micropores, and the micropore’s specific surface area and volume are 4.7 and 3.5 times the corresponding shale, respectively. In addition, the microporous heterogeneity of the isolated kerogen is stronger than that of shale, while the mesoporous heterogeneity is exactly the opposite. Meanwhile, the micropores fractal dimension Dm is positively correlated with organic matter (OM) content, while mesopores fractal dimension D1 and D2 are negatively linearly correlated with TOC content and have no significant relationship with clay mineral and quartz content (but show a significant positive correlation with illite and illite/smectite mixed layer). Isolated kerogen plays an important role in the pore (especially micropores) heterogeneity of shale, while other minerals (such as clay minerals) have a controlling effect on the mesopores heterogeneity of shale. Compared with marine shale, the marine-continental transitional shale of the Taiyuan Formation has a lower fractal dimension and better connectivity, which is conducive to shale gas seepage and migration. The final result can provide a significant basis for the reserve evaluation and the optimization of desert areas in the marine-continental transitional shale gas in the northern Ordos Basin.

Insights into prokaryotic communities and their potential functions in biogeochemical cycles in cold seep.

Deep-sea cold seeps are among the most productive ecosystems, sustaining unique fauna and microbial communities through the release of methane and other hydrocarbons. Our study revealed that the influence of seepage fluid on the prokaryotic community in the water column is surprisingly limited, which challenges conventional views regarding the impact of seepage fluids. In addition, we identified that different DOM compositions play a crucial role in shaping the prokaryotic community composition, providing new insights into the factors driving microbial diversity in cold seeps. Furthermore, the study highlighted Proteobacteria as key and multifaceted drivers of biogeochemical cycles in cold seeps, emphasizing their significant contribution to complex interactions and processes. These findings offer a fresh perspective on the dynamics of cold-seep environments and their microbial communities, advancing our understanding of the biogeochemical functions in deep-sea environments.

Comparative study of lysine acetylation in Vesicomyidae clam Archivesica marissinica and the manila clam Ruditapes philippinarum: adaptation mechanisms in cold seep environments

BackgroundThe deep-sea cold seep zone is characterized by high pressure, low temperature, darkness, and oligotrophy. Vesicomyidae clams are the dominant species within this environment, often forming symbiotic relationships with chemosynthetic microbes. Understanding the mechanisms by which Vesicomyidae clams adapt to the cold seep environment is significant. Acetylation modification of lysine is known to play a crucial role in various metabolic processes. Consequently, investigating the role of lysine acetylation in the adaptation of Vesicomyidae clams to deep-sea environments is worthwhile. So, a comparative study of lysine acetylation in cold seep clam Archivesica marissinica and shallow water shellfish Ruditapes philippinarum was conducted.ResultsA total of 539 acetylated proteins were identified with 1634 acetylation sites. Conservative motif enrichment analysis revealed that the motifs -KacR-, -KacT-, and -KacF- were the most conserved. Subsequent gene ontology (GO) and Kyoto encyclopedia of genes and genomes (KEGG) enrichment analyses were conducted on significantly differentially expressed acetylated proteins. The GO enrichment analysis indicated that acetylated proteins are crucial in various biological processes, including cellular response to stimulation, and other cellular processes ( p < 0.05 and false discovery rate (FDR) < 0.25). The results of KEGG enrichment analysis indicated that acetylated proteins are involved in various cellular processes, including tight junction, motor proteins, gap junction, phagosome, cGMP-PKG signaling pathways, endocytosis, glycolysis/gluconeogenesis, among others (p < 0.05 and FDR < 0.25). Notably, a high abundance of lysine acetylation was observed in the glycolysis/glycogenesis pathways, and the acetylation of glyceraldehyde 3-phosphate dehydrogenase might facilitate ATP production. Subsequent investigation into acetylation modifications associated with deep-sea adaptation revealed the specific identification of key acetylated proteins. Among these, the adaptation of cold seep clam hemoglobin and heat shock protein to high hydrostatic pressure and low temperature might involve an increase in acetylation levels. Acetylation of arginine kinase might be related to ATP production and interaction with symbiotic bacteria. Myosin heavy chain (Ama01085) has the most acetylation sites and might improve the actomyosin system stability through acetylation. Further validation is required for the acetylation modification from Vesicomyidae clams.ConclusionA novel comparative analysis was undertaken to investigate the acetylation of lysine in Vesicomyidae clams, yielding novel insights into the regulatory role of lysine acetylation in deep-sea organisms. The findings present many potential proteins for further exploration of acetylation functions in cold seep clams and other deep-sea mollusks.

Characteristics of Microbial Diversity and Metabolic Versatility in Dynamic Mid-Okinawa Trough Subsurface Sediments

Large-scale and multi-sample datasets have revealed that microbial diversity and geographic distribution patterns are distinct across various habitats, particularly between hydrothermal vent and cold seep ecosystems. To date, our understanding of the effects of spatial and geochemical gradients on marine microbial communities remains limited. Here, we report the microbial diversity and metabolic versatility of a remote seafloor sediment ecosystem at different sites (GC-2, -4, -5, -6, -8) in the Mid-Okinawa Trough (Mid-OT) using high-throughput metagenomic sequencing technology. Desulfobacteraceae (3.1%) were detected in a high abundance at GC-2 with intense methane concentrations (353 μL/L), which showed a clear correlation with cold seeping. Whereas Candidatus Brocadiaceae (1.7%), Rhodobacteraceae (0.9%), and Rhodospirillaceae (0.7%), which are commonly involved in denitrification and sulfur oxidation, were enriched at GC-8. Concurrently investigating the potential of deep-sea microbial metabolism, we gained insights into the adaptive capabilities and metabolic mechanisms of microorganisms within seafloor environments. Utilizing the Kyoto Encyclopedia of Genes and Genomes (KEGG) database, the analysis of functional modules revealed a significant enrichment (71–74%) of genes associated with metabolic pathways. These results expand our knowledge of the relationship between microbial biodiversity and metabolic versatility in deep-sea extreme environments.

Field experiments and main understanding of shale oil hydraulic fracturing

To understand the key processes of hydraulic fracturing in shale oil reservoirs, such as artificial fracture initiation and extension, proppant transportation and settlement, and the influencing factors of post-fracture production, many hydraulic fracturing field tests have been conducted in the United States. Examples include the ConocoPhillips tests and the National Hydraulic Fracturing Experiment. The results have promoted the innovation and development of fracturing technology. A good correlation exists between lithological changes and the roughness of artificial fractures. Although numerous artificial cracks are created, the number that can provide oil and gas seepage is relatively small, determined by the effectiveness of these cracks. The settlement of proppants in actual geological formations involves factors such as geology, lithology, fractures, and stress. The pressure data indicate that when the reservoir pressure drops below the bubble point pressure, the decline in production sharply increases. The key variables affecting shale oil well production include the horizontal well position, well spacing, horizontal section length, and sand addition intensity. These technologies are suitable for the adaptive process of China’s terrestrial shale oil fracturing, promoting the development and rapid increase of shale oil production.

Numerical Investigation of coupling hazard zone of coal spontaneous combustion and gas in gob for high-gas mines

As coal mining operations continue to deepen, the frequency of coal spontaneous combustion (CSC) and gas explosion disasters in high-gas mines is increasing. Understanding the distribution patterns of CSC and gas compound disaster zones in the gob during the extraction process is crucial for reducing the risks of combustion and explosion. This study focuses on the 201 working face of the Shuanglong Coal Mine, where a multi-physical field coupling model of pressure, temperature, gas seepage, and diffusion was established to investigate the evolution characteristics of compound disaster zones and propose corresponding prevention and control measures. The results demonstrate that the area with the most severe composite hazard is mainly located at the return roadway side, extending to the middle of the gob. With increased ventilation volume and advance rate, the area of the CSC and gas coupling hazard zone expands continuously. By implementing measures such as brattice cloth and nitrogen injection, the areas of spontaneous combustion and CH4 explosion zones were reduced by 53.6 % and 49.5 %, respectively, effectively controlling the extent of the compound disaster zone and eliminating the risk of gas explosions.