Some structures in the harbour environment need to be inspected regularly. However, these scenarios present a major challenge for the accurate estimation of a vehicle’s position and subsequent recognition of similar images. In these scenarios, visibility can be poor, making place recognition a difficult task as the visual appearance of a local feature can be compromised. Under these operating conditions, imaging sonars are a promising solution. The quality of the captured images is affected by some factors but they do not suffer from haze, which is an advantage. Therefore, a purely acoustic approach for unsupervised recognition of similar images based on forward-looking sonar (FLS) data is proposed to solve the perception problems in harbour facilities. To simplify the variation of environment parameters and sensor configurations, and given the need for online data for these applications, a harbour scenario was recreated using the Stonefish simulator. Therefore, experiments were conducted with preconfigured user trajectories to simulate inspections in the vicinity of structures. The place recognition approach performs better than the results obtained from optical images. The proposed method provides a good compromise in terms of distinctiveness, achieving 87.5% recall considering appropriate constraints and assumptions for this task given its impact on navigation success. That is, it is based on a similarity threshold of 0.3 and 12 consistent features to consider only effective loops. The behaviour of FLS is the same regardless of the environment conditions and thus this work opens new horizons for the use of these sensors as a great aid for underwater perception, namely, to avoid degradation of navigation performance in muddy conditions.