Environmental Variation Research Articles

Leaf polymorphism of beeches from the Jura (France) in the late Pliocene (Piacenzian): contribution to taxonomy in palaeobotany

Fossilized beech leaves were extracted from nodules in the Bletterans plateau (Jura, France) dating back to the Late Pliocene (Piacenzian, -2.7 Ma). During this period, seasonality was much less pronounced than it is today. A warm climate allowed the development of deciduous tree vegetation, comprising a mixture of tropical, subtropical, and temperate forests without modern analogues, including the presence of Fagus and Quercus. Various qualitative and quantitative morphological traits were studied, as well as comparisons with leaves from fossil species such as F. menzelii and F. kraeuselii,and leaves from present-day species like F. grandifolia and F. sylvatica. The most discriminative features include the basal angle, the angle between primary vein and secondary veins, the angle between primary vein and tertiary veins, and the density of tertiary veins. Three distinct groups stand out, referred to as morphotypes indicating environmental variations rather than genetic groups. Leaves of F. sylvatica separate into two distinct morphotypes, whereas the American species F. grandifolia, and the European species F. kraeuselii and F. menzelii, form a third morphotype. The Bletterans samples are close to these three morphotypes. These morphological correspondences do not allow associating a species to the jurassian samples, but they support the existence of leaf morphotypes acclimated to fluctuating environmental conditions.

Effects of Physiological Status and Environmental Factors on the Lure Responses of Three Pest Fruit Fly Species (Diptera: Tephritidae).

Biotic and abiotic factors influence how insects respond to stimuli. This can make it challenging to interpret captures in traps used to monitor pest abundance in management programmes. To address this, the lure response of three pest fruit flies (Diptera: Tephritidae) was evaluated in a semi-field setting with respect to several physiological and environmental factors. Using standardised methods with known fly numbers in field cages, the response to Biolure (food-based lure) was evaluated for Ceratitis capitata, Ceratitis cosyra and Bactrocera dorsalis. Response to the male lures was tested: E.G.O PheroLure for C. capitata and C. cosyra, Trimedlure for C. capitata, and methyl eugenol for B. dorsalis. The physiological variables evaluated were fly age, sex, weight, and total body nutritional composition. The environmental effects of temperature, relative humidity and light intensity were also assessed. Protein-deprived adults responded more strongly to Biolure. The response to Biolure was not sex-specific. Fly age influenced the response of all species to all tested lures. However, this effect was species and lure specific. Temperature was the most influential environmental factor, with response generally increasing with temperature. Lower thresholds for lure response, despite the proximity of responsive flies, range from 12.21 to 22.95°C depending on the species and lure tested. These results indicate that trapping systems and management activity thresholds must take physiological and environmental variation into account to increase their accuracy.

Changes in the composition of invertebrate assemblages from wave-exposed intertidal mussel stands along the Nova Scotia coast, Canada

Rocky intertidal habitats occur worldwide and are mainly characterized by primary space holders such as seaweeds and sessile invertebrates. Some of these organisms are foundation species, as they can form structurally complex stands that host many small invertebrates. The abundance of primary space holders is known to vary along coastlines driven directly or indirectly by environmental variation. However, it is less clear if the invertebrate assemblages associated to a foundation species may remain relatively unchanged along coastlines, as similar stands of a foundation species can generate similar microclimates. We examined this question using abundance data for invertebrate species found in mussel stands of a similar structure in wave-exposed rocky habitats at mid-intertidal elevations along the Atlantic coast of Nova Scotia (Canada). While the most abundant invertebrate species were found at three locations spanning 315 km of coastline, species composition (a combined measure of species identity and their relative abundance) differed significantly among the locations. One of the species explaining the highest amount of variation among locations (a barnacle) exhibited potential signs of bottom-up regulation involving pelagic food supply, suggesting benthic–pelagic coupling. The abundance of the species that explained the highest amount of variation (an oligochaete) was positively related to the abundance of their predators (mites), further suggesting bottom-up forcing in these communities. Overall, we conclude that species assemblages associated to structurally similar stands of a foundation species can show clear changes in species composition at a regional scale.

Biotic and abiotic drivers of harbor seal (Phoca vitulina) fine‐scale densities in the Salish Sea

AbstractUnderstanding relationships between environmental characteristics and variation in species occurrence and density can provide information for managing human activities, protected species, and species of commercial importance in a dynamic system. To identify environmental drivers associated with variation in harbor seal (Phoca vitulina) densities in the Salish Sea, Washington, we analyzed 20 years of boat‐based survey data and environmental covariates using a hierarchical distance sampling model. We included spatial, temporal, and spatiotemporal environmental covariates in our model and produced fine‐scale predictive maps displaying in‐water estimated densities from our model results. We found that spatial covariates were the strongest predictors for harbor seal densities in the Salish Sea. Harbor seals were more abundant closer to major river mouths, near shore, in shallower waters, and in areas with more haul‐out sites. Additionally, harbor seal density varied with shoreline type. Changes in predicted harbor seal spatial use of the Salish Sea varied but with little difference between breeding/molting and nonbreeding/nonmolting seasons. Our results revealed spatiotemporal variation in harbor seal fine‐scale density in the Salish Sea, which are particularly important for conservation planning, as spatiotemporal variation in harbor seal density can exert heterogenous top‐down effects on prey species populations, some of which are threatened.

Microbial diversity and ecological complexity emerging from environmental variation and horizontal gene transfer in a simple mathematical model

BackgroundMicrobiomes are generally characterized by high diversity of coexisting microbial species and strains, and microbiome composition typically remains stable across a broad range of conditions. However, under fixed conditions, microbial ecology conforms with the exclusion principle under which two populations competing for the same resource within the same niche cannot coexist because the less fit population inevitably goes extinct. Therefore, the long-term persistence of microbiome diversity calls for an explanation.ResultsTo explore the conditions for stabilization of microbial diversity, we developed a simple mathematical model consisting of two competing populations that could exchange a single gene allele via horizontal gene transfer (HGT). We found that, although in a fixed environment, with unbiased HGT, the system obeyed the exclusion principle, in an oscillating environment, within large regions of the phase space bounded by the rates of reproduction and HGT, the two populations coexist. Moreover, depending on the parameter combination, all three major types of symbiosis were obtained, namely, pure competition, host-parasite relationship, and mutualism. In each of these regimes, certain parameter combinations provided for synergy, that is, a greater total abundance of both populations compared to the abundance of the winning population in the fixed environment.ConclusionsThe results of this modeling study show that basic phenomena that are universal in microbial communities, namely, environmental variation and HGT, provide for stabilization and persistence of microbial diversity, and emergence of ecological complexity.

Genome resequencing reveals population divergence and local adaptation of blacklegged ticks in the United States.

Tick vectors and tick-borne disease are increasingly impacting human populations globally. An important challenge is to understand tick movement patterns, as this information can be used to improve management and predictive modelling of tick population dynamics. Evolutionary analysis of genetic divergence, gene flow and local adaptation provides insight on movement patterns at large spatiotemporal scales. We develop low coverage, whole genome resequencing data for 92 blacklegged ticks, Ixodes scapularis, representing range-wide variation across the United States. Through analysis of population genomic data, we find that tick populations are structured geographically, with gradual isolation by distance separating three population clusters in the northern United States, southeastern United States and a unique cluster represented by a sample from Tennessee. Populations in the northern United States underwent population contractions during the last glacial period and diverged from southern populations at least 50 thousand years ago. Genome scans of selection provide strong evidence of local adaptation at genes responding to host defences, blood-feeding and environmental variation. In addition, we explore the potential of low coverage genome sequencing of whole-tick samples for documenting the diversity of microbial pathogens and recover important tick-borne pathogens such as Borrelia burgdorferi. The combination of isolation by distance and local adaptation in blacklegged ticks demonstrates that gene flow, including recent expansion, is limited to geographical scales of a few hundred kilometres.

Causes and consequences of microbiome formation in mosquito larvae

Abstract The assembly of host‐associated microbial communities is influenced by multiple factors, but the effect of microbiomes on host phenotypes is often not well understood. To address questions of food‐web effects on host microbiome assembly, we manipulated the resource environment (grass only [G] vs. grass + nutrients [GN]), competition type (intra‐ vs. inter‐specific) and density (high vs. low) for Culex restuans mosquito larvae. We predicted the microbial communities in fourth‐instar larvae would differ between these environmental treatments and that these treatments would translate into differences in the adult phenotype. Resource environment and density influenced the larval microbiome. In addition, the larval microbiome exhibited notable differences compared to the free‐living microbial communities. Resource‐driven differences in the larval samples can be attributed to Arcobacteraceae being more abundant in larvae reared in the GN treatments relative to those reared in the G treatments and Comamonadaceae being more abundant in the G treatment. Although significant, the difference in community structure between density treatments was difficult to discern. This appears to be driven by Weeksellaceae only being abundant in the high‐density, interspecific, GN treatment. Rearing larvae to adulthood under severe food limitation resulted in low survival (<25%) in both resource environments. Approximately 60% of survivors to adulthood were male. Larvae reared in the intraspecific, G treatment had the shortest development time to adulthood and emerged as the smallest adults. These results demonstrate how environmental variation can significantly alter the alpha and beta diversity of free‐living microbes, which in turn can significantly affect host phenotype and critical life history traits, such as development time, size at adulthood, and survival. These findings highlight the importance of considering environmental influences on microbiome diversity to understand and predict host outcomes, offering valuable insights for diverse applications in fields such as ecology, public health, and agriculture.

Cyclic dynamics drive summer movement ecology of snowshoe hares (Lepus americanus)

Animals exhibit dynamic movement and activity in response to environmental variation including changes in reproductive opportunities, predation risk, or food availability. Yet, it remains unclear which factors are primary in affecting animal movement, and whether the relative importance of these factors are consistent through time. We tracked snowshoe hares (Lepus americanus) using GPS telemetry during eight summers spanning a hare population cycle (2015–2022) in southwestern Yukon, Canada, to determine associations between environmental variation and hare movement and home range size. Hare density varied 25-fold during the study and home range size increased markedly during low hare density, especially for males. Both sexes retained similar core space use and linearity of movements, but at low densities males had greater and more variable movement rates and time spent travelling. Trail cameras revealed that annual changes in hare movement were also correlated with relative abundance of lynx (Lynx canadensis) and coyotes (Canis latrans). However, hare detection rates within a season were not closely associated with seasonal variation in predator detection. Observed differences between male and female hares in some metrics highlighted that different life histories and reproductive behavior are likely the main drivers of hare movement dynamics. Therefore, fitness rewards associated with successful mate search and reproduction appear to outweigh risks associated with increased movement, even in highly variable environments where costs of prioritizing reproduction-related activities are notably high and variable.

Highly Sensitive Optical Fiber MZI Sensor for Specific Detection of Trace Pb2+ Ion Concentration

A novel chitosan (CS) functionalized optical fiber sensor with a bullet-shaped hollow cavity was proposed in this work for the trace concentration of Pb2+ ion detection in the water environment. The sensor is an optical fiber Mach–Zehnder interferometer (MZI), which consists of a sequentially spliced bullet-shaped hollow-core fiber (HCF), thin-core fiber, and another piece of spliced bullet-shaped HCF. The hollow-core fiber is caused to collapse by adjusting the amount of discharge to form a tapered hollow cavity with asymmetric end faces. The bullet-like hollow cavities act as beam expanders and couplers for optical fiber sensors, which were symmetrically spliced at both ends of a section of thin core fiber. The simulation and experiments show that the bullet-like hollow-core tapered cavity excites more cladding modes and is more sensitive to variation in the external environment than the planar and spherical cavities. The ion-imprinted chitosan (IIP-CS) film was fabricated with Pb2+ ion as a template and uniformly coated on the surface for specific recognition of Pb2+. Experimental verification confirms that the developed sensor can achieve high-sensitivity Pb2+ ion detection, with a sensitivity of up to −12.68 pm/ppm and a minimum Pb2+ ion detection concentration of 5.44 ppb Meanwhile, the sensor shows excellent selectivity, repeatability, and stability in the ion detection process, which has huge potential in the direction of heavy metal ion detection in the future.

Temperature-related movement and habitat utilization patterns of Dall’s porpoises, small cetaceans seasonally migrating into the subarctic Pacific

Under global warming, impacts on animals’ spatial distribution in response to ocean warming have been anticipated for marine endotherms like cetaceans. Therefore, determining the distribution patterns of small cetaceans is key to understanding how their distributional patterns are susceptible to changing oceanic environments. To investigate the effect of environmental variations on distributional patterns of small cetaceans on a fine scale, we attached eight satellite tags to Dall’s porpoises bycaught in Eastern Hokkaido. After release, the tagged porpoises moved into the western North Pacific and its marginal sea, the Sea of Okhotsk. Our tagging results showed that the habitat ranges of Dall’s porpoises were restricted by water temperature. To avoid warm water, tagged porpoises changed their directions when they faced surface thermocline of 17°C. Dall’s porpoise tracked for the longest periods (116 days) showed southwestward movement after entering the Sea of Japan through the Soya Strait, while the other seven tagged porpoises stayed in the Sea of Okhotsk and off the Pacific coast around Hokkaido and Chishima islands for the entire tracking periods. Vertical movements were also recorded by these tags. Long-term tracking of Dall’s porpoises’ movement provides important insights into seasonal migration patterns, particularly for fall southward migration, which has not been well investigated compared with spring northward migration. Information on seasonal migration, distribution and percentage of time spent at the surface will improve our approach to monitoring Dall’s porpoise populations and discover important knowledge for improving the conservation and management of the population.

Quartz grain microtextures of Holocene sebkhas sediments in southeast Tunisia: Implications for sedimentary processes and depositional environments

Detrital quartz grains extracted from sebkha sediments in southeastern Tunisia underwent scanning electron microscopy analysis to identify sediment sources and assess the influence of the saline environment on the grains. Core sediments collected from Sebkha el Melah and Sebkha Mhabeul cover the last 5000 and 2000 BP, respectively. The uppermost Unit III, present in both cores, exhibits two distinct facies based on the mechanical microtextures of its quartz grains. The aeolian facies sediments are characterized by quartz grains with rounded outlines, upturned plates, and crescentic percussion marks. In contrast, the fluvial facies sediments are associated with quartz grains featuring subangular outlines, v-shaped percussion cracks, conchoidal fractures. Observations on the quartz grains of the sebkhas suggest multiple transportation and processing events, indicating long-distance transport and rapid deposition rates. The majority of quartz grains appear to originate from the surrounding terrain, reflecting the dynamic geological history of the region. This study delves into the connection between microtexture variations on quartz grain surfaces and specific historical climatic conditions in the sebkhas. By examining geochemical variations along the cores, facies with elevated salt concentrations corresponding to warmer periods reveal extensively weathered quartz grains. This substantial chemical alteration is evident through microtextures such as oriented etch pits, anastomosed dissolution networks and solution crevasses. The profound dissolution has significantly impacted the quartz lattice, resulting in the decomposition of the grains and the formation of "cauliflower" or "spongy" shapes, erasing prior microtextures. Conversely, during less warm periods, quartz dissolution was less severe, thereby preserving microtextures.Sand grain surfaces are notably sensitive to both transport processes and variations in the physicochemical environment. In the hypersaline and confined environments of sebkhas in southeastern Tunisia, potent post-sedimentary processes can obliterate and obscure the original microtextures recorded on grains from previous environments due to highly fluctuating physicochemical conditions.

Exploring diverse aspects of celiac disease - A review

Celiac disease is a chronic inflammatory disorder triggered by the ingestion of gluten-containing foods in genetically susceptible individuals. This multifactorial disease has both genetic and environmental components, with gluten serving as the environmental trigger and specific genetic variations in the major histocompatibility complex region contributing to the genetic predisposition. Contrary to previous assumptions, celiac disease is not a rare disorder, with a global prevalence estimated at approximately 1%. However, it often remains under-recognized because many affected individuals do not exhibit the classic gastrointestinal symptoms associated with the condition. Instead, they may present with nonspecific manifestations of nutritional deficiencies or may be entirely asymptomatic. Celiac disease is associated with an increased incidence of autoimmune disorders, and its identification in asymptomatic or silent cases is crucial for managing associated conditions and preventing long-term complications such as lymphoma. The relationship between celiac disease and other autoimmune disorders, particularly type 1 diabetes, suggests a potential trigger role for gluten. In this article we review the development of celiac disease, including its types, pathogenesis, clinical features, and associated diseases or complications. We will also discuss available tests, treatments, and preventive approaches related to this subject.

Landscape genomics reveals genetic signals of environmental adaptation of African wild eggplants.

Crop wild relatives (CWR) provide a valuable resource for improving crops. They possess desirable traits that confer resilience to various environmental stresses. To fully utilize crop wild relatives in breeding and conservation programs, it is important to understand the genetic basis of their adaptation. Landscape genomics associates environments with genomic variation and allows for examining the genetic basis of adaptation. Our study examined the differences in allele frequency of 15,416 single nucleotide polymorphisms (SNPs) generated through genotyping by sequencing approach among 153 accessions of 15 wild eggplant relatives and two cultivated species from Africa, the principal hotspot of these wild relatives. We also explored the correlation between these variations and the bioclimatic and soil conditions at their collection sites, providing a comprehensive understanding of the genetic signals of environmental adaptation in African wild eggplant. Redundancy analysis (RDA) results showed that the environmental variation explained 6% while the geographical distances among the collection sites explained 15% of the genomic variation in the eggplant wild relative populations when controlling for population structure. Our findings indicate that even though environmental factors are not the main driver of selection in eggplant wild relatives, it is influential in shaping the genomic variation over time. The selected environmental variables and candidate SNPs effectively revealed grouping patterns according to the environmental characteristics of sampling sites. Using four genotype-environment association methods, we detected 396 candidate SNPs (2.5% of the initial SNPs) associated with eight environmental factors. Some of these SNPs signal genes involved in pathways that help adapt to environmental stresses such as drought, heat, cold, salinity, pests, and diseases. These candidate SNPs will be useful for marker-assisted improvement and characterizing the germplasm of this crop for developing climate-resilient eggplant varieties. The study provides a model for applying landscape genomics to other crops' wild relatives.

Composition of soil Frankia assemblages across ecological drivers parallels that of nodule assemblages in Alnus incana ssp. tenuifolia in interior Alaska.

In root nodule symbioses (RNS) between nitrogen (N)-fixing bacteria and plants, bacterial symbionts cycle between nodule-inhabiting and soil-inhabiting niches that exert differential selection pressures on bacterial traits. Little is known about how the resulting evolutionary tension between host plants and symbiotic bacteria structures naturally occurring bacterial assemblages in soils. We used DNA cloning to examine soil-dwelling assemblages of the actinorhizal symbiont Frankia in sites with long-term stable assemblages in Alnus incana ssp. tenuifolia nodules. We compared: (1) phylogenetic diversity of Frankia in soil versus nodules, (2) change in Frankia assemblages in soil versus nodules in response to environmental variation: both across succession, and in response to long-term fertilization with N and phosphorus, and (3) soil assemblages in the presence and absence of host plants. Phylogenetic diversity was much greater in soil-dwelling than nodule-dwelling assemblages and fell into two large clades not previously observed. The presence of host plants was associated with enhanced representation of genotypes specific to A. tenuifolia, and decreased representation of genotypes specific to a second Alnus species. The relative proportion of symbiotic sequence groups across a primary chronosequence was similar in both soil and nodule assemblages. Contrary to expectations, both N and P enhanced symbiotic genotypes relative to non-symbiotic ones. Our results provide a rare set of field observations against which predictions from theoretical and experimental work in the evolutionary ecology of RNS can be compared.

Interactions between developmental phenology, carbon movement, and storage constrain demography in the understory clonal herb Podophyllum peltatum L.

Little is known about how carbon integration and storage dynamics affect and are affected by demography in field populations. We sought to elucidate this link by examining dynamic patterns of carbon integration relative to the timing of demographically significant developmental decisions regarding shoot type determination in mayapple, Podophyllum peltatum, a clonal plant with large and persistent rhizomes. Individual rhizome systems growing in natural populations were fed 14CO2 either in late-April, early-May, or mid-June, then harvested at intervals throughout the current season and into the next. When distribution of label was examined we found that carbon fixed at different times in the growing season is used differently: April-fixed assimilate remained in the labeled shoot or was moved into the old rhizome, May-fixed assimilate was found predominantly in the old rhizome, while early-June fixed assimilate moved into the old rhizome and the extending new ramet. Movement of assimilate into the old rhizome appeared to have precedence over formation of additional new ramets. Despite significant within season changes in location of dominant sinks within rhizome systems, there was little redistribution of labeled assimilate: early fixed assimilate was not used to fuel later within season growth, however, assimilate was redistributed between seasons. Vegetative and sexual systems differed in the distribution only of April-fixed assimilate. This was observed even though early labeling occurred prior to anthesis. Sexual systems retained a greater proportion of assimilate in the stem than did vegetative ones, which exported more to the old rhizome. 14C-distribution patterns did not vary between systems differing in future demographic status suggesting that the developmental decision regarding shoot type is based on resources acquired in prior years. We explore the hypothesis that preformation and storage are functionally linked traits that permit plants to coordinate the developmental determination of structures differing in cost and demographic function with known resource status. We conclude that demography influences and is influenced by integrative physiology and that physiological restrictions on within season redistribution of assimilates constrain plants' capacities to respond to short-term environmental variation. Such constraints may affect plants' abilities to respond to rapid environmental change in the Anthropocene.

Competition and drought affect cleistogamy in a non-additive way in the annual ruderal Lamium amplexicaule.

Competition affects mixed-mating strategies by limiting available abiotic or biotic resources such as nutrients, water, space, or pollinators. Cleistogamous species produce closed (cleistogamous, CL), obligately selfed, simultaneously with open (chasmogamous, CH), potentially outcrossed flowers. The effects of intraspecific competition on fitness and cleistogamy variation can range from limiting the production of costly CH flowers because of resource limitation, to favouring CH production because of fitness advantages of outcrossed, CH offspring. Moreover, the effects of competition can be altered when it co-occurs with other environmental variations. We grew plants from seven populations of the ruderal Lamium amplexicaule, originating from different climates and habitats, in a common garden experiment combining drought, interspecific competition, and seasonal variation. All these parameters have been shown to influence the degree of cleistogamy in the species on their own. In spring, competition and drought negatively impacted fitness, but the CL proportion only increased when plants were exposed to both treatments combined. We did not observe the same results in autumn, which can be due to non-adaptive phenotypic variation, or to differences in soil compactness between seasons. The observed responses are largely due to phenotypic plasticity, but we also observed phenotypic differentiation between populations for morphological, phenological, and cleistogamy traits, pointing to the existence of different ecotypes. Our data do not support the hypothesis that CL proportion should decrease when resources are scarce, as plants with reduced growth had relatively low CL proportions. We propose that variation in cleistogamy could be an adaptation to pollinator abundance, or to environment-dependent fitness differences between offspring of selfed and outcrossed seeds, two hypotheses worth further investigation. This opens exciting new possibilities for the study of the maintenance of mixed-mating systems using cleistogamous species as models that combine the effects of inbreeding and reproductive costs.

Eco-evolutionary dynamics of cooperative antimicrobial resistance in a population of fluctuating volume and size

Antimicrobial resistance to drugs (AMR), a global threat to human and animal health, is often regarded as resulting from cooperative behaviour. Moreover, microbes generally evolve in volatile environments that, together with demographic fluctuations (birth and death events), drastically alter population size and strain survival. Motivated by the need to better understand the evolution of AMR, we study a population of time-varying size consisting of two competing strains, one drug-resistant and one drug-sensitive, subject to demographic and environmental variability. This is modelled by a binary carrying capacity randomly switching between mild and harsh environmental conditions, and driving the fluctuating volume (total amount of nutrients and antimicrobials at fixed concentration), and thus the size of the community (number of resistant and sensitive cells). We assume that AMR is a shared public good when the concentration of resistant cells exceeds a fixed concentration cooperation threshold, above which the sensitive strain has a growth advantage, whereas resistant cells dominate below it. Using computational means, and devising an analytical treatment (built on suitable quenched and annealed averaging procedures), we fully characterise the influence of fluctuations on the eco-evolutionary dynamics of AMR, and notably obtain specific strain fixation and long-lasting coexistence probabilities as a function of the environmental variation rate and cooperation threshold. We find that microbial strains tend to coexistence, but demographic fluctuations eventually lead to the extinction of resistant or sensitive cells for small or large values of the concentration cooperation threshold, respectively. This also holds for dynamic environments, whose specific properties determine the extinction timescale.

Particle size shapes prokaryotic communities and vertical connectivity in the water columns of the slope and central basin of the South China Sea

Sinking of organic matter represents an essential mechanism for sequestration of carbon that is exported from the ocean surface to deeper depths. While recent studies have highlighted the important role of microorganisms in the biological pump, the impact of sinking particles on the vertical connectivity of microbial communities has received limited attention. In this study, we present the microbial profile of sinking particles in the northern slope and the central basin of the marginal South China Sea (SCS) using an in-line size-fractionated water filtration and Illumina high-throughput 16S rRNA amplicon sequencing. We investigate the microbial community composition within organic particles of different size fractions (30, 5, 3, 0.22 μm), and we reveal significant differences in the microbial community structure between these two distinct areas of SCS. The vertical connectivity of microbial communities in the slope and the central basin of SCS shows distinct patterns of microbial dispersal along the water column that occurs via the sinking of organic particles. We find that the microbial communities have different abundances on the different examined particle size fractions and which highlights the role of sinking particles in shaping microbial lifestyles along the water column. Our study underscores the influence of environmental variations on the vertical connectivity of microorganisms and provides additional insights into the marine biological pump under different environmental conditions.

Research Methodology and Biostatistics Series II - Quality of Medical Research

Medical research has mushroomed, and concerns are expressed regarding the quality of such voluminous research output. Among several factors, the quality can be substantially improved by effective control ofuncertainties that severely afflict the reliability and validity of all empirical research. Uncertainty is an endemic affliction of human activity, and medical research is particularly susceptible. Two primary types of medical uncertainties are aleatory and epistemic. The former is inherent due to biological, environmental, and other natural variations, and the latter arises mostly from knowledge gaps. Biostatistical methods are equipped to handle sampling fluctuations that are a source of a major part of the aleatory uncertainties. Tools such as scoring systems, aetiology diagrams, and expert systems can help to reduce some types of epistemic uncertainties. Proper choice of research toolsremains crucial for controlling most epistemics.

The diversity and risk of potential pathogenic bacteria on the surface of glaciers in the southeastern Tibetan Plateau

Glaciers, which constitute the world's largest global freshwater reservoir, are also natural microbial repositories. The frequent pandemic in recent years underscored the potential biosafety risks associated with the release of microorganisms from the accelerated melting of glaciers due to global warming. However, the characteristics of pathogenic microorganisms in glaciers are not well understood. The glacier surface is the primary area where glacier melting occurs that is often the main subject of research on the dynamics of pathogenic microbial communities in efforts to assess glacier biosafety risks and devise preventive measures. In this study, high-throughput sequencing and quantitative polymerase chain reaction methods were employed in analyses of the composition and quantities of potential pathogenic bacteria on the surfaces of glaciers in the southeastern Tibetan Plateau. The study identified 441 potential pathogenic species ranging from 215 to 4.39 × 1011 copies/g, with notable seasonal and environmental variations being found in the composition and quantity of potential pathogens. The highest level of diversity was observed in April and snow, while the highest quantities were observed in October and cryoconite. Host analysis revealed that >70 % of the species were pathogens affecting animals, with the highest proportion of zoonotic pathogens being observed in April. Analysis of aerosols and glacial meltwater dispersion suggested that these microbes originated from West Asia, primarily affecting the central and southern regions of China. Null model analysis indicated that the assembly of potential pathogenic microbial communities on glacier surfaces was largely governed by deterministic processes. In conclusion, potential pathogenic bacteria on glacier surfaces mainly originated from the snow and exhibited significant temporal and spatial variation patterns. These findings can be used to enhance researchers' ability to predict potential biosafety risks associated with pathogenic bacteria in glaciers and to prevent their negative impact on populations and ecological systems.