Variation Of Signal Intensity Research Articles

Faster Inversion Recovery Prepared T1 weighted segmented turbo field echo sequence (IR-TFE): Evaluating options for eliminating the start-up shot

In conventional multi-shot IR-TFE sequences, e.g., clinical myocardial viability imaging, data collected during the first one or two shots is ignored, to minimize signal intensity variation across the shots. For a typical 8-10 heartbeat acquisition, such dummy shots results in scan overhead of 10-15% longer scan time. We evaluate the effect of removing the start-up shots in such IR-TFE sequences, and minimizing the effect of resulting artifacts

Prostate cancer characterization on MR images using fractal features

Computerized detection of prostate cancer on T2-weighted MR images. The authors combined fractal and multifractal features to perform textural analysis of the images. The fractal dimension was computed using the Variance method; the multifractal spectrum was estimated by an adaptation of a multifractional Brownian motion model. Voxels were labeled as tumor/nontumor via nonlinear supervised classification. Two classification algorithms were tested: Support vector machine (SVM) and AdaBoost. Experiments were performed on images from 17 patients. Ground truth was available from histological images. Detection and classification results (sensitivity, specificity) were (83%, 91%) and (85%, 93%) for SVM and AdaBoost, respectively. Classification using the authors' model combining fractal and multifractal features was more accurate than classification using classical texture features (such as Haralick, wavelet, and Gabor filters). Moreover, the method was more robust against signal intensity variations. Although the method was only applied to T2 images, it could be extended to multispectral MR.

Detection of gamma irradiated fig seeds by analysing electron spin resonance

Seeds of fig produced in Turkey were studied by electron spin resonance (ESR) technique for detection purposes. Unirradiated fig seeds (control) exhibited a weak ESR singlet at g=2.0052±0.0003 (native signal). Irradiation induced at least one additional intense singlet overlapping to the control signal and caused a significant increase in signal intensity without any changes in spectral patterns. Variation of ESR signal intensity of irradiated samples at room temperature with time in a long-term showed that free radicals responsible from the ESR spectrum of fig seeds were not stable but detectable after 80days. Annealing studies at five different temperatures were used to determine the kinetic behaviour and activation energy of the radiation-induced radicals in fig seeds. A study on microwave saturation characteristics and thermal behaviour of the ESR singlet (g=2.0052) in irradiated and unirradiated fig seed samples was also carried out by using ESR technique. These preliminary results indicate that microwave saturation characteristics of the ESR signal at room and low temperatures may be useful method to distinguish irradiated fig seeds from unirradiated ones.

Anomalous behavior of dielectric permittivity of graphene-filled polymer composite

Dependences of the dielectric permittivity of a graphene-filled polymer composite and the ESR signal intensity in γ-irradiated samples of this composite on the concentration of graphene additive have been studied. Anomalous behavior of the permittivity correlates with the ESR signal intensity variation, which is indicative of the possible structural rearrangement in the epoxy resin-graphene filler system.

Dispersion in the SERS Enhancement with Silver Nanocube Dimers

The SERS phenomenon was studied using a large set of silver nanocube dimers programmed to self-assemble in preset locations of a patterned substrate. This SERS substrate made it possible to demonstrate the dependence of the SERS enhancement on the geometry of the silver nanocube dimers and to quantify the dispersion in the SERS enhancement obtained in an ensemble of dimers. In addition to the effects of the gap distance of the dimer and the orientation of the dimer axis relative to the laser polarization on SERS enhancement, the data reveal an interesting dependence of the site-to-site variations of the enhancement on the relative orientation of the nanocubes in the dimer. We observed the highest heterogeneity in the SERS signal intensity with face-to-face dimers and a more robust SERS enhancement with face-to-edge dimers. Numerical calculations indicate that the plasmon resonance frequencies of face-to-face dimers shift considerably with small changes in gap distance. The resonance frequency shifts make it less likely for many of the dimers to satisfy the matching condition between the photon frequencies and the plasmon resonance frequency, offering an explanation for the large site-to-site variations in SERS signal intensity. These results indicate that plasmonic nanostructure designs for SERS substrates for real-world applications should be selected not only to maximize the signal enhancement potential but also to minimize the heterogeneity of the substrate with respect to signal enhancement. The latter criterion poses new challenges to experimentalists and theorists alike.

Rapid B1+ mapping using a preconditioning RF pulse with TurboFLASH readout

In MRI, the transmit radiofrequency field (B(1)(+)) inhomogeneity can lead to signal intensity variations and quantitative measurement errors. By independently mapping the local B(1)(+) variation, the radiofrequency-related signal variations can be corrected for. In this study, we present a new fast B(1)(+) mapping method using a slice-selective preconditioning radiofrequency pulse. Immediately after applying a slice-selective preconditioning pulse, a turbo fast low-angle-shot imaging sequence with centric k-space reordering is performed to capture the residual longitudinal magnetization left behind by the slice-selective preconditioning pulse due to B(1)(+) variation. Compared to the reference double-angle method, this method is considerably faster. Specifically, the total scan time for the double-angle method is equal to the product of 2 (number of images), the number of phase-encoding lines, and approximately 5T(1), whereas the slice-selective preconditioning method takes approximately 5T(1). This method was validated in vitro and in vivo with a 3-T whole-body MRI system. The combined brain and pelvis B(1)(+) measurements showed excellent agreement and strong correlation with those by the double-angle method (mean difference = 0.025; upper and lower 95% limits of agreement were -0.07 and 0.12; R = 0.93; P < 0.001). This fast B(1)(+) mapping method can be used for a variety of applications, including body imaging where fast imaging is desirable.

Validation of an image simulation technique for two computed radiography systems: An application to neonatal imaging

The purpose of this study is to develop a computer model to simulate the image acquisition for two computed radiography (CR) imaging systems used for neonatal chest imaging: (1) The Agfa ADC Compact, a flying spot reader with powder phosphor image plates (MD 40.0); and (2) the Agfa DX-S, a line-scanning CR reader with needle crystal phosphor image plates (HD 5.0). The model was then applied to compare the image quality of the two CR imaging systems. Monte Carlo techniques were used to simulate the transport of primary and scattered x rays in digital x-ray systems. The output of the Monte Carlo program was an image representing the energy absorbed in the detector material. This image was then modified using physical characteristics of the CR imaging systems to account for the signal intensity variations due to the heel effect along the anode-cathode axis, the spatial resolution characteristics of the imaging system, and the various sources of image noise. The simulation was performed for typical acquisition parameters of neonatal chest x-ray examinations. To evaluate the computer model, the authors compared the threshold-contrast detectability in simulated and experimentally acquired images of a contrast-detail phantom. Threshold-contrast curves were computed using a commercially available scoring program. The threshold-contrast curves of the simulated and experimentally acquired images show good agreement; for the two CR systems, 93% of the threshold diameters calculated from the simulated images fell within the confidence intervals of the threshold diameter calculated from the experimentally assessed images. Moreover, the superiority of needle based CR plates for neonatal imaging was confirmed. The good agreement between simulated and experimental acquired results indicates that the computer model is accurate.

Activation of cAMP-dependent Signaling Induces Oxidative Modification of the Cardiac Na+-K+ Pump and Inhibits Its Activity

Cellular signaling can inhibit the membrane Na(+)-K(+) pump via protein kinase C (PKC)-dependent activation of NADPH oxidase and a downstream oxidative modification, glutathionylation, of the beta(1) subunit of the pump alpha/beta heterodimer. It is firmly established that cAMP-dependent signaling also regulates the pump, and we have now examined the hypothesis that such regulation can be mediated by glutathionylation. Exposure of rabbit cardiac myocytes to the adenylyl cyclase activator forskolin increased the co-immunoprecipitation of NADPH oxidase subunits p47(phox) and p22(phox), required for its activation, and increased superoxide-sensitive fluorescence. Forskolin also increased glutathionylation of the Na(+)-K(+) pump beta(1) subunit and decreased its co-immunoprecipitation with the alpha(1) subunit, findings similar to those already established for PKC-dependent signaling. The decrease in co-immunoprecipitation indicates a decrease in the alpha(1)/beta(1) subunit interaction known to be critical for pump function. In agreement with this, forskolin decreased ouabain-sensitive electrogenic Na(+)-K(+) pump current (arising from the 3:2 Na(+):K(+) exchange ratio) of voltage-clamped, internally perfused myocytes. The decrease was abolished by the inclusion of superoxide dismutase, the inhibitory peptide for the epsilon-isoform of PKC or inhibitory peptide for NADPH oxidase in patch pipette solutions that perfuse the intracellular compartment. Pump inhibition was also abolished by inhibitors of protein kinase A and phospholipase C. We conclude that cAMP- and PKC-dependent inhibition of the cardiac Na(+)-K(+) pump occurs via a shared downstream oxidative signaling pathway involving NADPH oxidase activation and glutathionylation of the pump beta(1) subunit.

N -alkane adsorption to polar silica surfaces

The structures of medium-length n-alkane species (C(8)-C(11)) adsorbed to a hydrophilic silica/vapor interface were examined using vibrational sum frequency spectroscopy. Experiments sampling out-of-plane orientation show a clear pattern in vibrational band intensities that implies chains having primarily all-trans conformations lying flat along the interface. Further analysis shows that the methylene groups of the alkane chains have their local symmetry axes directed into and away from the surface. Spectra acquired under different polarization conditions interlock to reinforce this picture of interfacial structure and organization. Variation in signal intensities with chain length suggests that correlation between adsorbed monomers weakens with increasing chain length. This result stands in contrast with alkane behavior at neat liquid/vapor interfaces where longer length alkanes show considerably more surface induced ordering than short chain alkanes.

Silver and proton driven fluorescent multiple-mode molecular logic gates employing phthalocyanines

Spectral properties and switch behavior of two alkyl thia units bearing Zn (II) phthalocyanine derivatives (Pc-A and Pc-B) were investigated in solvents and in solid matrix of ethyl cellulose by means of absorption and emission spectroscopy. Fluorescence lifetime and fluorescence quantum yield values of the Zn (II) phthalocyanines were calculated. The employed phthalocyanines demonstrated multiple molecular logic gate functions operated by H + and Ag + ions as chemical inputs. The silver driven fluorescence modulation of the Pc-A arises from reversible variations in emission signal intensity at 717 nm. The Pc-B exhibited a similar decreasing emission response to proton and silver ions and an accompanying increasing peak yielding an isobestic point at 746 nm upon protonation. The phthalocyanine doped thin films selectively responded to silver ions in sub-nano and/or pico molar levels. Observed detection limits were 7.6 × 10 −12 and 2.3 × 10 −11 M for Pc-A and Pc-B, respectively. In immobilized phases the attained reversible relative signal changes of Pc-A and Pc-B were 82 and 90%, respectively.

Cells Respond Digitally to Variation in Signal Intensity via Stochastic Activation of NF-κB

Cells detect and process spatiotemporal signals and activate gene regulatory pathways in response. Here we use high-throughput microfluidic cell culture, quantitative gene expression analysis and mathematical modeling- to investigate how mammalian cells detect external concentrations of the signaling molecule TNF-α and relay information to the gene expression programs via the transcription factor NF-κB. We measured NF-κB activity in thousands of fluorescently labeled live cells with single-cell resolution with a temporal resolution of 6 minutes and for durations up to 12 hours under TNF-α concentrations covering 4 orders of magnitude. TNF-α induced mRNA levels of 23 genes were measured and quantified at the same concentration range and duration, linking the transcription factor dynamics to the gene expression. A stochastic model was developed that reproduces the single-cell dynamics and gene expression profiles at all measured conditions, constituting a broadly applicable model for TNF-α induced NF-κB signaling. We find, in contrast to population studies, that the activation is a discrete process at the single cell level with fewer cells responding at lower doses. Nevertheless, the activated cells respond robustly and early genes are upregulated even at the lowest TNF-α concentrations, indicating digital signaling to gene expression. Late gene expression requires persistent NF-κB activity that is induced only at highest signal levels. The measurements reveal the activation threshold, a hypersensitive dynamic range and saturation, and shows that as few as two bound receptors can activate the pathway. The cells further encode TNF-α concentration information by modulating the temporal dynamics of NF-κB, with higher concentrations resulting in faster activation and more oscillations. Our results -in addition to their biological significance- highlight the importance of high-quality, high-throughput measurements at the single-cell level in understanding how biological systems operate.

Challenging the cumulative injury model: positive effects of greater body mass on disc degeneration

Background context There are differing views as to the causes of disc degeneration. One view, referred to as a cumulative or repetitive injury model, explains disc degeneration, in great part, as the result of “wear and tear” on the disc from routine daily exposures to physical loading or biomechanical forces. Perhaps paradoxically, such physical loading has been thought to be generally beneficial for other structures of the musculoskeletal system. Purpose The goal of this study was to investigate the associations of physical loading from body weight using quantitative measures of disc degeneration. Study design This is an exposure-discordant twin study. Methods We selected 44 pairs of healthy male monozygotic (MZ) twins with 8 kg or more discordance in body weight (mean 13 kg), with lumbar magnetic resonance imaging and bone density measurements available. The main outcome of disc degeneration was assessed through quantitatively measured disc height, and disc signal intensity and signal variation adjusted by the intrabody reference, adjacent cerebrospinal fluid signal, at L1–L4. Data on suspected constitutional and environmental risk factors were available for control of possible confounding factors. Results Higher body weight was associated with 6.2% higher bone density in the lumbar spine, confirming an effective discordance (p<.0001). Disc signal variation was 5.4% higher (“better”) among the heavier MZ co-twins (p=.005), but the 2.6% higher disc heights and 2.9% higher adjusted disc signals were not statistically significant. Conclusions Contrary to common beliefs, our findings suggest that cumulative or repetitive loading because of higher body mass (nearly 30 pounds on average) was not harmful to the discs. In fact, a slight delay in L1–L4 disc desiccation was observed in the heavier men, as compared with their lighter twin brothers.

Identification of TNF-α and MMP-9 as potential baseline predictive serum markers of sunitinib activity in patients with renal cell carcinoma using a human cytokine array

Background:Several drugs are available to treat metastatic renal-cell carcinoma (MRCC), and predictive markers to identify the most adequate treatment for each patient are needed. Our objective was to identify potential predictive markers of sunitinib activity in MRCC.Methods:We collected sequential serum samples from 31 patients treated with sunitinib. Sera of six patients with extreme phenotypes of either marked responses or clear progressions were analysed with a Human Cytokine Array which evaluates 174 cytokines before and after treatment. Variations in cytokine signal intensity were compared between both groups and the most relevant cytokines were assessed by ELISA in all the patients.Results:Twenty-seven of the 174 cytokines varied significantly between both groups. Five of them (TNF-α, MMP-9, ICAM-1, BDNF and SDF-1) were assessed by ELISA in 21 evaluable patients. TNF-α and MMP-9 baseline levels were significantly increased in non-responders and significantly associated with reduced overall survival and time-to-progression, respectively. The area under the ROC curves for TNF-α and MMP-9 as predictive markers of sunitinib activity were 0.83 and 0.77.Conclusion:Baseline levels of TNF-α and MMP-9 warrant further study as predictive markers of sunitinib activity in MRCC. Selection of patients with extreme phenotypes seems a valid method to identify potential predictive factors of response.

Silver Nanodesert Rose as a Substrate for Surface-Enhanced Raman Spectroscopy

Silver galvanic displacement on silicon has been employed to produce large-area reproducible substrates, with morphology similar to that of the natural desert rose but on the micrometer scale. The process is based on an extremely simple wet chemistry approach using only AgF and KF, as silver and fluoride sources. A key element is the absence of HF in the deposition solution, which has been commonly used in previous silver galvanic displacement processes. The new process affords a higher degree of control in the redox reaction than those reported previously. The structures formed in this manner possess a large area-to-volume ratio with a high density of rough silver flakes uniformly distributed across the substrate. The silver morphology on the nanometer scale is shown to provide an excellent platform for surface-enhanced Raman spectroscopy (SERS), yielding detection levels for trans-1,2-bis(4-pyridyl)ethylene, 4-mercaptopyridine, and Rhodamine 6G in solution down to ppb, ppt, and ppq limits, respectively. The SERS reproducibility on the substrate was verified by monitoring the signal intensity variations across the sample. The simplicity of the substrate fabrication process, as well as the excellent uniformity, opens up opportunities for the quantitative and in-field chemical trace analysis using these substrates.

Copper binding to chicken and human prion protein amylodogenic regions: Differences and similarities revealed by Ni2+ as a diamagnetic probe

Both human (h) and chicken (Ch) prion proteins (PrP) bind copper ions within the so called "tandem repeat" N-terminal region. Outside this region, hPrP possesses two additional copper binding sites, localized at His-96 and His-111 in the so called "amylodogenic" or neurotoxic region (residues 91-126). Also ChPrP possesses a similar region (ChPrP(105-140)) containing two His (His-110 and His-124) and an identical hydrophobic tail of 15 amino acids rich in Ala and Gly. The copper binding abilities within such region of ChPrP were investigated by NMR, CD and potentiometry using Ni(2+) as diamagnetic probe. The formation of diamagnetic metal complexes allowed to monitor the chemical shift and signal intensity variations and to determine the structural and kinetic features of the His-110 and His-124 metal binding sites. Finally a comparison between the hPrP and ChPrP metal binding abilities was performed. We found that the two prion proteins exhibited different copper and nickel preferences with the favoured metal binding sites localized at opposite His: His-110 for ChPrP, and His-111 for hPrP.

Outstanding Paper: Medical and Interventional Science Challenging the Cumulative Injury Model: Positive Effects of Greater Body Mass on Disc Degeneration

BACKGROUND CONTEXT: There are differing views as to the causes of disc degeneration. One view, referred to as a cumulative or repetitive injury model, explains disc degeneration, in great part, as the result of ‘‘wear and tear’’ on the disc from routine daily exposures to physical loading or biomechanical forces. Perhaps paradoxically, such physical loading has been thought to be generally beneficial for other structures of the musculoskeletal system. PURPOSE: The goal of this study was to investigate the associations of physical loading from body weight using quantitative measures of disc degeneration. STUDY DESIGN: This is an exposure-discordant twin study. METHODS: We selected 44 pairs of healthy male monozygotic (MZ) twins with 8 kg or more discordance in body weight (mean 13 kg), with lumbar magnetic resonance imaging and bone density measurements available. The main outcome of disc degeneration was assessed through quantitatively measured disc height, and disc signal intensity and signal variation adjusted by the intrabody reference, adjacent cerebrospinal fluid signal, at L1–L4. Data on suspected constitutional and environmental risk factors were available for control of possible confounding factors. RESULTS: Higher body weight was associated with 6.2% higher bone density in the lumbar spine, confirming an effective discordance (p!.0001). Disc signal variation was 5.4% higher (‘‘better’’) among the heavier MZ co-twins (p5.005), but the 2.6% higher disc heights and 2.9% higher adjusted disc signals were not statistically significant. CONCLUSIONS: Contrary to common beliefs, our findings suggest that cumulative or repetitive loading because of higher body mass (nearly 30 pounds on average) was not harmful to the discs. In fact, a slight delay in L1–L4 disc desiccation was observed in the heavier men, as compared with their lighter twin brothers. 2010 Elsevier Inc. All rights reserved.

The role of intensity standardization in medical image registration

Acquisition-to-acquisition signal intensity variations (non-standardness) are inherent in MR images. Standardization is a post processing method for correcting inter-subject intensity variations through transforming all images from the given image gray scale into a standard gray scale wherein similar intensities achieve similar tissue meanings. The lack of a standard image intensity scale in MRI leads to many difficulties in tissue characterizability, image display, and analysis, including image segmentation. The influence of standardization on these tasks has been documented well; however, effects of standardization on medical image registration have not been studied yet. In this paper, we investigate the role of intensity standardization in registration tasks with systematic and analytic evaluations involving clinical MR images. We conducted nearly 20,000 clinical MR image registration experiments and evaluated the quality of registrations both quantitatively and qualitatively. The evaluations show that intensity variations between images degrades the accuracy of registration performance. The results imply that the accuracy of image registration not only depends on spatial and geometric similarity but also on the similarity of the intensity values for the same tissues in different images.

Variations of brain magnetic resonance imaging among manganese-exposed workers

Variations of the signal intensities in the magnetic resonance (MR) T(1)-weighted image (T(1)WI) of globus pallidus among manganese(Mn)-exposed workers were explored to provide a scientific basis for exposed biomarker of manganese-injured central nervous system (CNS). The brain MR T(1) and T(2) WI in eighteen male asymptomatic Mn-exposed, eight manganism and nine healthy control workers were examined routinely by adopting a 1.5 Tesla signal superconducting system. The SIGP and the signal intensity in frontal white matter (SIFWM) in the same side were determined, then pallidal index (PI) was calculated. Concentration of MnO(2) in workplaces and content of manganese in red blood cell (MnRBC) among workers were respectively determined by flame atomic absorption spectrometer (AAS) and inductively coupled plasma-atomic emission spectrophotometry (ICP-AES). The follow-up investigation in the eight high Mn-exposed workers was made one year later. The results showed that the median of air MnO(2) in smelting workplace was 0.64 mg/m(3)(0.07 - 5.40 mg/m(3)), which were respective 0.56 mg/m(3)(0.09 - 1.71 mg/m(3)) in power distribution room (low Mn-exposure) and 0.89 mg/m(3) (0.07 - 5.40 mg/m(3)) in furnace (high Mn-exposure). PI in the Mn-exposed and high Mn-exposed workers were both higher than those of the manganism and control workers(116.4 +/- 8.2, 119.0 +/- 7.9, 105.3 +/- 8.4 and 102.2 +/- 1.5, respectively. Mn vs control, t' = 7.146, P = 0.000; Mn vs manganism, t = 3.181, P = 0.004. High Mn-exposure vs control, t' = 7.446, P = 0.000; high Mn-exposure vs manganism, t = 3.763, P = 0.001). The increased signal in T(1)WI of globus pallidus was observed in Mn-exposed workers, especially in high Mn-exposed workers. The content of manganese in red blood cell of Mn-exposed and control workers was significantly higher than those of the manganism workers [(151.6 +/- 40.5) ng/ml, (149.2 +/- 21.3) ng/ml, (154.5 +/- 46.6) ng/ml, (144.4 +/- 14.2) ng/ml, (20.8 +/- 7.4) ng/ml respectively. The difference was significant in statistics. Manganism vs control, t = 20.206, P = 0.000; manganism vs Mn, t' = 13.144, P = 0.000; manganism vs low and high Mn, t' = 12.964, 9.957, respectively, P = 0.000]. Only a decreased median of air MnO(2) in furnace was found one year later (0.89, 0.31 mg/m(3), Z = -2.142, P = 0.032). The difference was significant in statistics. Our data suggests that SIGP of MR T(1)WI among workers was obviously increased by manganese-exposure. PI may be taken as the signal of CNS injury which was induced by manganese-exposure.

Automated segmentation of the macula by optical coherence tomography

This paper presents optical coherence tomography (OCT) signal intensity variation based segmentation algorithms for retinal layer identification. Its main ambition is to reduce the calculation time required by layer identification algorithms. Two algorithms, one for the identification of the internal limiting membrane (ILM) and the other for retinal pigment epithelium (RPE) identification are implemented to evaluate structural features of the retina. Using a 830 nm spectral domain OCT device, this paper demonstrates a segmentation method for the study of healthy and diseased eyes.

Hippocampi, Thalami, and Accumbens Microstructural Damage in Schizophrenia: A Volumetry, Diffusivity, and Neuropsychological Study

Volumetric abnormalities in the subcortical structures have been described in schizophrenia. However, it still has to be clarified if subtle microstructural damage is also present. Thus, we aimed to detect subcortical volume and mean diffusivity (MD) alterations in 45 patients with diagnosis of schizophrenia compared with 45 age-, gender-, and educational attainment-matched healthy comparison (HC) participants, by using a combined volumetry and diffusion tensor imaging (DTI) method. A secondary aim was to identify the neuropsychological correlates of subcortical abnormalities in the schizophrenic group. We found thalami and hippocampi bilaterally and left accumbens to show MD increase in the schizophrenic group. No volumetric decrease was found. Moreover, significant correlations between the MD values in subcortical structures (right thalamus and hippocampus and left accumbens) and working memory performance were found. Thus, subcortical microstructural alterations are present in schizophrenia even in absence of volumetric abnormalities. Furthermore, microstructural damage in subcortical areas is linked to working memory, suggesting the presence of a subtle microstructural subcortical dysfunction in the pathoetiological mechanism underlying high cognitive load performances in schizophrenia. Finally, our findings indicate that MD is a more sensitive marker of brain tissue deficits than signal intensity variations measured in T1-weighted imaging data, consistently with previous reports. Thus, DTI appears to be an invaluable tool to investigate subcortical pathology in schizophrenia, greatly enhancing the ability to detect subtle brain changes in this complex disorder.