Variance For Characters Research Articles

Visualizing and Tuning Thermodynamic Dispersion in Metalloprotein Monolayers

In coupling the redox state of an adsorbed molecule to its spectral characteristics redox profiles can be directly imaged by means of far-field fluorescence. At suitable levels of dilution, on optically transparent electrode surfaces, reversible interfacial electron transfer processes can be followed pixel by pixel down to scales which approach the molecular. In mapping out switching potentials across a surface population, thermodynamic dispersion, related to variance in the orientation, electronic coupling, protein fold, electric field drop, and general surface order, can be quantified. The self-assembled monolayer buffering the protein from the underlying metallic electrode surface not only acts to tune electronic coupling between the two but also potentially provides a variable more easily segmented from other contributions to molecular dispersion. We have, specifically, considered the possibility that the supporting monolayer crystallinity is a significant contributor to the subsequently observed spread in half-wave potentials. We report here that this is indeed the case and that this spread diminishes from 17 to 12 mV for the blue copper protein azurin as the supporting alkanethiol layer crystallinity increases. The work herein, then, presents not only a direct determination of submonolayer scale variance in redox character but also a means of tuning this through gross surface and entirely standard chemical means.

Heritability and adaptive phenotypic plasticity of adult body size in the mosquito Aedes aegypti with implications for dengue vector competence

Adaptive phenotypic plasticity is particularly important to organisms with developmental cycles that undergo ontogenetic niche shifts that differentially subject individual life stages to heterogeneous and often stressful environmental conditions. The yellow fever and dengue fever vector mosquito, Aedes aegypti, typically breeds in small water-filled containers that expose the developing aquatic larvae to competition for resources with conspecifics and high probabilities for habitat drying. Here we investigated the heritability ( h 2) and phenotypic plasticity among A. aegypti laboratory populations and field populations from Trinidad, West Indies. Heritability for body size was moderate or completely eroded among the laboratory populations, while field populations contained high genetic variation among both males and females. Norms of reactions based on optimum vs. deficient larval conditions for artificial sibling families representing Trinidad field populations suggested significant gene × environment interactions influence body size and that there may be sex specific differences in allocation of resources. Individuals reared under optimum laboratory conditions were significantly larger and showed much less variability in body size plasticity than their field reared cohorts, suggesting that exposure to environmental stress may be common for A. aegypti larval development and would undoubtedly impact other traits, including arbovirus vector competence among adult females, in a similar fashion. Broad genetic variance in body size and other characters is likely maintained by balancing selection. Our results also suggest the need for caution in translating conclusions from experiments with laboratory colonies to natural populations. These would likely be more informative to expected phenotypes under natural conditions if conducted over a range of conditions that simulate environmental stress.

Repetibilidade e importância de caracteres para avaliação de coleção ativa de germoplasma de batata

Como a base genética da batata cultivada Solanum tuberosum L. é estreita, torna-se importante a utilização do germoplasma existente nos programas de melhoramento, associada a um eficiente método de caracterização. O objetivo foi verificar a repetibilidade, o número de avaliações necessárias e a importância relativa de caracteres fenotípicos na caracterização de uma coleção ativa de germoplasma de batata. Um conjunto de 77 cultivares e clones elite de batata foi cultivado no campo experimental da Embrapa Clima Temperado, nas primaveras de 1999, 2000, 2001, 2002 e 2003, em parcelas de fileira simples de 15 plantas, espaçadas de 0,30 x 0,80 m, dentro e entre fileiras, respectivamente. Foram avaliados 31 caracteres nas plantas e nos tubérculos, os quais fazem parte dos descritores mínimos da batata. Os dados foram submetidos à análise de variância, de repetibilidade e de importância de caracteres. Concluiu-se que os caracteres com maior importância na caracterização do germoplasma avaliado são pigmentação da haste e intensidade de coloração da base do broto, tanto pela porcentagem de contribuição quanto pela repetibilidade da expressão nos diferentes anos de cultivo, refletindo no reduzido número de avaliações necessárias. Os caracteres coalescência da folha e pigmentação da nervura, presença de asas, tipo de folhagem, inserção da folha, largura dos folíolos, tamanho dos folíolos, cor da película, freqüência de flores, pubescência da base do broto, pigmentação do pedúnculo e pigmentação externa da corola, aspecto do ápice e aspereza da película, por apresentarem menores repetibilidades e/ou menores contribuições para a dissimilaridade, podem receber menos ênfase nas avaliações

A quantitative review of heterozygosity–fitness correlations in animal populations

The ease of obtaining genotypic data from wild populations has renewed interest in the relationship between individual genetic diversity and fitness-related traits (heterozygosity-fitness correlations, or HFC). Here we present a comprehensive meta-analysis of HFC studies using powerful multivariate techniques which account for nonindependence of data. We compare these findings with those from univariate techniques, and test the influence of a range of factors hypothesized to influence the strength of HFCs. We found small but significantly positive effect sizes for life-history, morphological, and physiological traits; while theory predicts higher mean effect sizes for life-history traits, effect size did not differ consistently with trait type. Newly proposed measures of variation were no more powerful at detecting relationships than multilocus heterozygosity, and populations predicted to have elevated inbreeding variance did not exhibit higher mean effect sizes. Finally, we found evidence for publication bias, with studies reporting weak, nonsignificant effects being under-represented in the literature. In general, our review shows that HFC studies do not generally reveal patterns predicted by population genetic theory, and are of small effect (less than 1% of the variance in phenotypic characters explained). Future studies should use more genetic marker data and utilize sampling designs that shed more light on the biological mechanisms that may modulate the strength of association, for example by contrasting the strength of HFCs in mainland and island populations of the same species, investigating the role of environmental stress, or by considering how selection has shaped the traits under investigation.

Host specificity is linked to intraspecific variability in the genusLamellodiscus(Monogenea)

SUMMARYWe investigated whether host specificity is linked to variability within species of Lamellodiscus monogeneans, which are gill ectoparasites of the Sparidae. We sampled fish parasites in the northeastern part of the Mediterranean Sea: 4 specialist species, using 1 single host species, and 3 generalist species, using 2 distinct host species. Intraspecific variability was assessed from 2 different datasets. Morphometric variability of the attachment organ, called the haptor, was estimated first from measurements of several sclerified haptoral parts on 102 individuals. Genetic variability was calculated based on comparisons of sequences derived from the first internal transcribed spacer (ITS-1) of nuclear ribosomal DNA of 62 individuals. Morphometric variances in the specialist versus generalist species were compared via principal component analysis and F-tests, and uncorrected genetic distances (p-distances) were estimated within each species. We showed that the inter-individual variance of morphometric characters, as well as p-distances, are clearly greater within generalist species than specialist ones. These findings suggest that a relative increase in morphological and molecular variability enhances the possibility to colonize new host species in monogeneans, and supports the hypothesis that intraspecific variability could be a potential determinant of host specificity.

Stability of genetic variance and covariance for reproductive characters in the face of climate change in a wild bird population

Global warming has had numerous effects on populations of animals and plants, with many species in temperate regions experiencing environmental change at unprecedented rates. Populations with low potential for adaptive evolutionary change and plasticity will have little chance of persistence in the face of environmental change. Assessment of the potential for adaptive evolution requires the estimation of quantitative genetic parameters, but it is as yet unclear what impact, if any, global warming will have on the expression of genetic variances and covariances. Here we assess the impact of a changing climate on the genetic architecture underlying three reproductive traits in a wild bird population. We use a large, long-term, data set collected on great tits (Parus major) in Wytham Woods, Oxford, and an 'animal model' approach to quantify the heritability of, and genetic correlations among, laying date, clutch size and egg mass during two periods with contrasting temperature conditions over a 40-year period (1965-1988 [cooler] vs. 1989-2004 [warmer]). We found significant additive genetic variance and heritability for all traits under both temperature regimes. We also found significant negative genetic covariances and correlations between clutch size and egg weight during both periods, and among laying date and clutch size in the colder years only. The overall G matrix comparison among periods, however, showed only a minor difference among periods, thus suggesting that genotype by environment interactions are negligible in this context. Our results therefore suggest that despite substantial changes in temperature and in mean laying date phenotype over the last decades, and despite the large sample sizes available, we are unable to detect any significant change in the genetic architecture of the reproductive traits studied.

Geoparnus rhinoceros sp. nov., a new edaphic dryopid with unusual sexual dimorphism (Coleoptera: Dryopidae)

Adults of Geoparnus rhinoceros sp. nov. (Dryopidae) are described from Borneo (Sarawak, Malaysia). The male of the new species possesses a distinct horn-like process on the clypeus, a character, which has so far not been reported from Dryopidae. The type material was collected in primary rain forest by sifting forest floor debris. Analysis of variance of metric characters was performed.

Agronomical and Adaptation Characters of Tritipyrum Lines in Comparison with Triticale and Iranian Wheat

In this study a Completely Randomized Design was conducted to evaluate the agronomical potential and adaptability behavior of tritipyrum lines in comparison with some triticale and local Iranian wheat varieties. The field trial was sown in October 2000 in research field of agricultural college of Bahonar University of Kerman, Iran and harvested in June 2001. All the conditions during the course of experiment were the same as for wheat in Kerman region. Nine tritipyrum lines, five triticale lines and four improved local wheat varieties were used in this study. The following traits were measured or counted on each plot, survival of plants per plot, height at maturity, tiller number, number of spikelets per spike, heading date, fertility, 1000 grain weight, biological yield, economical grain yield and harvest index. The results showed the apparent uniform growth and wheat-like morphology of tritipyrum lines in comparing with triticales and local wheat cultivars. The analysis of variance for characters studied showed a large variation between genotypes for the most traits in Kerman conditions. The mean yield in all tritipyrum lines (387 kg ha-1), in spite of having severe brittle rachis, in comparison with triticales (815 kg ha-1) and the improved local Iranian wheat cultivars (1988 kg ha-1) showed a considerable adaptability of tritipyrum lines in this first ever trail in Iran.

Age-dependent genetic variance in a life-history trait in the mute swan.

Genetic variance in characters under natural selection in natural populations determines the way those populations respond to that selection. Whether populations show temporal and/or spatial constancy in patterns of genetic variance and covariance is regularly considered, as this will determine whether selection responses are constant over space and time. Much less often considered is whether characters show differing amounts of genetic variance over the life-history of individuals. Such age-specific variation, if present, has important potential consequences for the force of natural selection and for understanding the causes of variation in quantitative characters. Using data from a long-term study of the mute swan Cygnus olor, we report the partitioning of phenotypic variance in timing of breeding (subject to strong natural selection) into component parts over 12 different age classes. We show that the additive genetic variance and heritability of this trait are strongly age-dependent, with higher additive genetic variance present in young and, particularly, old birds, but little evidence of any genetic variance for birds of intermediate ages. These results demonstrate that age can have a very important influence on the components of variation of characters in natural populations, and consequently that separate age classes cannot be assumed to be equivalent, either with respect to their evolutionary potential or response.

NEW SPECIES OF STURNIRA (CHIROPTERA: PHYLLOSTOMIDAE) FROM NORTHERN SOUTH AMERICA

Yellow-shouldered bats (genus Sturnira Gray, 1842), found throughout Latin America, are not well understood taxonomically. Four specimens of Sturnira from Bolivia and Venezuela possess dental characteristics differing from those of currently known species, leading us to regard them as representing a new species. We describe external, dental, and cranial characteristics and conduct a multivariate comparison using 29 morphometric characters for 44 male specimens of Sturnira erythromos, S. ludovici, S. hondurensis, and the new species. In a principal components analysis, most of the variation was summarized on component I (78.5% of total character variance), a general size vector. A multiple-comparisons test of component I projections showed all differences among species pairs to be highly significant, except that between S. ludovici and S. hondurensis. For the 29 individual characters, the new species was statistically different from S. erythromos in 21, S. ludovici in 13, and S. hondurensis in 14. The new species has a unique combination of dental characteristics, including bicuspid upper incisors, trilobed lower incisors, and smooth 1st and 2nd lower molars.

Line x tester analysis in sugarcane (Saccharum officinarum)

Combining ability variances and effects were estimated for important agronomic and biochemical traits in sugarcane using line x tester mating design. Five commercially grown varieties and one line from germplasm collection were involved in this study of which three were used as females (lines) and three as males (testers). The six agronomic characters studied were number of millable stalk per stool, stalk diameter, stalk height, weight of millable stalk, refroctometre brix and plant volume. The five bio-chemical characters studied include polatronic reading (pol), fibre, purity, brix and pure obtainable cane-sugar (POCS). Among the lines, Aiwa and Mana and among the testers Vatu and Mentor were found to be the best general combiners for most of the agronomic and bio-chemical characters. Four out of nine crosses namely Aiwa x Mentor, Kaba x Vatu, Kaba x Yasawa and Mana x Yasawa were found to be the best crosses. Analysis of Variance for bio-chemical characters showed that only one character (% fibre) was significant. The line x tester interaction was not significant for any of the characters studied. Estimates of variance due to gca and sca and their ratio revealed predominantly non-additive gene action for these characters. Non-additive gene action can be exploited in F1 generation. Development of new hybrid varieties with improved agronomic and bio-chemical characters is therefore suggested.

How do characters evolve?

Ricklefs claims to show that morphological evolution in birds is associated with speciation events--that is, it is punctuational--by inference from data on only species number, clade age and character variance from a range of passerine clades. He suggests that variance increases in proportion with clade age under gradual change, but in proportion to the logarithm of species number if change is punctuational. Here I show that both clade age and the logarithm of species number independently predict variance under both gradual and punctuational change, rendering Ricklefs' results uninformative about his central hypothesis.

An index of functional diversity

Abstract. Functional diversity has been seen as the key to predicting the stability, invasibility, resource capture, nutrient cycling and productivity of communities. However, it has been unclear how to estimate it. Ten criteria for an index of functional diversity are developed. These include that it should reflect the range of characters present and the abundance of the species with those characters in the community, and be unaffected by the measurement units used or by the number of species.An index that meets all ten criteria, FDvar, is investigated. It is based on the variance in characters, weighted by the abundance of the species with those characters. Tested with artificial and randomly generated data, it showed reasonable use of the 0 ‐ 1 range (mean 0.60, range 0.0009 ‐ 0.975) and intuitive behaviour. Tested with field data from eight sites in New Zealand, it gave a good spread of values (mean 0.65, range across sites 0.34 ‐ 0.84), showed good ability to distinguish between the communities and its performance was ecologically intuitive. Illustrative correlations are made with mean annual temperature and soil fertility, determined by a bio‐assay. FDvar is recommended for general use.

An index of functional diversity

Abstract Functional diversity has been seen as the key to predicting the stability, invasibility, resource capture, nutrient cycling and productivity of communities. However, it has been unclear how to estimate it. Ten criteria for an index of functional diversity are developed. These include that it should reflect the range of characters present and the abundance of the species with those characters in the community, and be unaffected by the measurement units used or by the number of species. An index that meets all ten criteria, FDvar, is investigated. It is based on the variance in characters, weighted by the abundance of the species with those characters. Tested with artificial and randomly generated data, it showed reasonable use of the 0 - 1 range (mean 0.60, range 0.0009 - 0.975) and intuitive behaviour. Tested with field data from eight sites in New Zealand, it gave a good spread of values (mean 0.65, range across sites 0.34 - 0.84), showed good ability to distinguish between the communities and i...

Componentes da variância em caracteres agronômicos de acerola

Estimaram-se os componentes da variância e sua participação porcentual na variância de caracteres de genótipos de acerola de Itápolis, Viradouro e Jaboticabal. Realizaram-se avaliações em folhas, frutos e outros caracteres das plantas, de dez/97 a jan/99. Na estimação, adotaram-se os modelos com clones, épocas e clones x épocas, quando havia duas plantas do mesmo clone e com genótipos e épocas, quando havia uma planta por genótipo. Verificaram-se diferenças significativas em clones, épocas e clones x épocas em todos os caracteres, exceto comprimento de folhas (CMFO), rendimento de polpa (RMP20FR) e dias em colheita, que apresentaram significância em fatores específicos. A variância ambiental interfere mais acentuadamente em largura de folha (LMFO), massa de polpa, quantidade de vitamina C (VITC), RMP20FR e crescimento de ramos. Os proporcionalmente elevados componentes de variância genética de CMFO, LMFO, altura de planta, diâmetro de copa, altura de fruto, VITC e massa de fruto tornam efetiva a seleção de genótipos.

Phenotypic plasticity to light intensity in Arabidopsis thaliana: invariance of reaction norms and phenotypic integration

Phenotypic plasticity (the pattern of response of organisms to changes in environmental conditions) and phenotypic integration (the pattern of character correlations) are important components of our understanding of the evolution of complex phenotypes. Most studies published so far in this area have been conducted within populations with the express aim of predicting future response to evolutionary forces. However, among-population differentiation for plasticity and trait correlations are important indicators of recent past events that have shaped the currently observable phenotypes. We investigated variation in the reaction norms of several traits in a large number of accessions of Arabidopsis thaliana exposed to different levels of light quantity as well as the environmental lability of the corresponding across-population character variance–covariance matrix. Our results show that there is an astounding degree of inter-population variation for character means and very little variation for plasticity, in agreement with the idea that A. thaliana is a light-specialist often occurring in open, disturbed habitats. However, this plant also shows patterns of plasticity that are predicted to be adaptive based on functional ecological considerations, such as an increase in either specific leaf area or leaf number (but not both) under low light. We also demonstrate that the set of character correlations in A. thaliana is extremely stable to changes in light availability, contrary to previous findings in the same species when different environmental factors were considered. Several processes that might have been responsible for the observed patterns are discussed as a prelude to follow-up research on these problems.

Evolutionary significance of sexual and asexual modes of propagation in Neogene species of the bryozoan Metrarabdotos in tropical America

Three new Miocene-Pliocene species of the cheilostome bryozoan Metrarabdotos from Venezuela are atypical in showing significant evidence that as many as half the colonies originated asexually (clonally) by “regeneration” from previously existing colonies, rather than almost exclusively from ancestrular zooids (products of metamorphosis of sexually produced larvae), as is characteristic of the genus. The extremely low proportion of zooids (less than two percent) recognizably committed to producing larvae (ovicelled) in these Venezuelan species agrees with that reported in a variety of Danian (Paleocene) genera in which clonal propagation has been reported to predominate. However, all but two of 17 other living and fossil species of Metrarabdotos also have fewer than two percent of their zooids ovicelled, even though all but one of more than 250 colony bases examined originated from ancestrulae. The lack of significant correlation in Metrarabdotos between frequencies of ovicelled zooids and of ancestrular colonies suggests that clonal propagation may not have diverted resources from sexual reproduction. This inference is supported by the retention in these species of a level of heritable morphologic variation (estimated by partitioning among-colonies and within-colonies variance in zooid characters) that is commensurate with that estimated for species of Metrarabdotos in which propagation was apparently entirely by sexual means. Thus, sexual reproduction throughout the genus was apparently sufficient to maintain the genetic diversity from which speciation could proceed at normal rates. As estimated by both cladistic and nearest-neighbor morphologic-stratigraphic methods, the three Venezuelan species occupy quite different positions in the inferred phylogeny of Metrarabdotos. Thus, the elevated level of clonal propagation in these species appears to be a response to local conditions, most probably high productivity associated with upwelling, that promoted more rapid vegetative growth while leaving the level of sexual reproduction unchanged.

EVOLUTIONARY SIGNIFICANCE OF SEXUAL AND ASEXUAL MODES OF PROPAGATION IN NEOGENE SPECIES OF THE BRYOZOANMETRARABDOTOSIN TROPICAL AMERICA

Three new Miocene-Pliocene species of the cheilostome bryozoan Metrarabdotos from Venezuela are atypical in showing significant evidence that as many as half the colonies originated asexually (clonally) by “regeneration” from previously existing colonies, rather than almost exclusively from ancestrular zooids (products of metamorphosis of sexually produced larvae), as is characteristic of the genus. The extremely low proportion of zooids (less than two percent) recognizably committed to producing larvae (ovicelled) in these Venezuelan species agrees with that reported in a variety of Danian (Paleocene) genera in which clonal propagation has been reported to predominate. However, all but two of 17 other living and fossil species of Metrarabdotos also have fewer than two percent of their zooids ovicelled, even though all but one of more than 250 colony bases examined originated from ancestrulae. The lack of significant correlation in Metrarabdotos between frequencies of ovicelled zooids and of ancestrular colonies suggests that clonal propagation may not have diverted resources from sexual reproduction. This inference is supported by the retention in these species of a level of heritable morphologic variation (estimated by partitioning among-colonies and within-colonies variance in zooid characters) that is commensurate with that estimated for species of Metrarabdotos in which propagation was apparently entirely by sexual means. Thus, sexual reproduction throughout the genus was apparently sufficient to maintain the genetic diversity from which speciation could proceed at normal rates. As estimated by both cladistic and nearest-neighbor morphologic-stratigraphic methods, the three Venezuelan species occupy quite different positions in the inferred phylogeny of Metrarabdotos. Thus, the elevated level of clonal propagation in these species appears to be a response to local conditions, most probably high productivity associated with upwelling, that promoted more rapid vegetative growth while leaving the level of sexual reproduction unchanged.

Genetic architecture of adiposity in the cross of LG/J and SM/J inbred mice.

The genetic basis of variation in obesity in human populations is thought to be owing to many genes of relatively small effect and their interactions. The LG/J by SM/J intercross of mouse inbred strains provides an excellent model system in which to investigate multigenic obesity. We previously mapped a large number of quantitative trait loci (QTLs) affecting adult body weight in this cross. We map body composition traits, adiposity, and skeletal size, in a replicate F2 intercross of the same two strains containing 510 individuals. Using interval-mapping methods, we located eight QTLs affecting adiposity (Adip1-8). Two of these adiposity loci also affected tail length (Adip4 and Adip6) along with seven additional tail length QTLs (Skl1-7). A further four QTLs (Wt1-4) affect adult weight but not body composition. These QTLs have relatively small effects, typically about 0.2-0.4 standard deviation units, and account for between 3% and 10% of the variance in individual characters. All QTLs participated in epistatic interactions with other QTLs. Most of these interactions were due to additive-by-additive epistasis, which can nullify the apparent effects of single loci in our population. Adip8 interacts with all the other adiposity QTLs and seems to play a central role in the genetic system affecting obesity in this cross. Only two adiposity QTLs, Adip4 and Adip6, also affect tail length, indicating largely separate genetic control of variation in adiposity and skeletal size. Body size and obesity QTLs in the same locations as those discovered here are commonly found in mapping experiments with other mouse strains.

Comparison of genetic (co)variance matrices within and between Scabiosa canescens and S. columbaria

Abstract In the current study, we used bootstrap analyses and the common principal component (CPC) method of Flury (1988) to estimate and compare the G-matrix of Scabiosa columbaria and S. canescens populations. We found three major patterns in the G-matrices: (i) the magnitude of the (co)variances was more variable among characters than among populations, (ii) different populations showed high (co)variance for different characters, and (iii) there was a tendency for S. canescens to have higher genetic (co)variances than S. columbaria. The hypothesis of equal G-matrices was rejected in all comparisons and there was no evidence that the matrices differed by a proportional constant in any of the analyses. The two ‘species matrices’ were found to be unrelated, both for raw data and data standardized over populations, and there was significant between-population variation in the G-matrix in both species. Populations of S. canescens showed conservation of structure (principal components) in their G-matrices, contrasting with the lack of common structure among the S. columbaria matrices. Given these observations and the results from previous studies, we propose that selection may be responsible for some of the variation between the G-matrices, at least in S. columbaria and at the between-species level.