ABSTRACTLarge amounts of soil organic carbon (SOC) have accumulated over thousands of years in the northern permafrost regions. However, the SOC accumulation rates and the effects of topography, vegetation, and soil properties on SOC storage remain poorly constrained, leading to large uncertainties in the estimation of SOC storage and its response to warming. Here, we examined SOC stocks, densities, and accumulation rates using field sampling and radiometric dating in areas with different topographic parameters on the northern Qinghai–Tibet Plateau. Results show that SOC density and stock increases with elevation on south‐facing slopes but decreases with elevation on north‐facing slopes. The carbon accumulation rates in the upper 6 m soil are highest (16.32 g C m−2 year−1) in the north‐facing alpine wet meadow and lowest (1.07 g C m−2 year−1) in the south‐facing alpine steppe. Elevation‐, slope‐, and slope aspect‐induced variations in soil properties and vegetation type are the main factors controlling the spatial SOC distribution. These results imply that the topography strongly affects the spatial heterogeneity of SOC in mountainous permafrost regions. Overall, our findings highlight that topographic factors should be further integrated into carbon models of carbon responses to climate change in permafrost‐affected soils.